View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4801_high_8 (Length: 220)

Name: NF4801_high_8
Description: NF4801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4801_high_8
NF4801_high_8
[»] chr2 (5 HSPs)
chr2 (19-206)||(3220430-3220617)
chr2 (38-206)||(12504860-12505032)
chr2 (38-206)||(14680894-14681066)
chr2 (38-157)||(39587523-39587646)
chr2 (144-206)||(39587460-39587522)
[»] chr1 (4 HSPs)
chr1 (34-199)||(52887853-52888022)
chr1 (39-200)||(29887098-29887263)
chr1 (38-206)||(52608987-52609159)
chr1 (68-172)||(13728701-13728805)
[»] scaffold0014 (2 HSPs)
scaffold0014 (38-206)||(173653-173825)
scaffold0014 (38-206)||(143859-144031)
[»] chr8 (3 HSPs)
chr8 (38-206)||(44198037-44198209)
chr8 (38-206)||(20793579-20793751)
chr8 (38-206)||(23928942-23929114)
[»] chr7 (7 HSPs)
chr7 (38-206)||(48513409-48513581)
chr7 (38-206)||(3718203-3718375)
chr7 (38-206)||(42105285-42105457)
chr7 (38-200)||(48727851-48728017)
chr7 (114-166)||(34529808-34529860)
chr7 (114-166)||(45574882-45574934)
chr7 (114-163)||(17990443-17990492)
[»] chr6 (1 HSPs)
chr6 (38-206)||(29651914-29652086)
[»] chr5 (5 HSPs)
chr5 (38-206)||(36678940-36679112)
chr5 (38-206)||(36662666-36662838)
chr5 (38-194)||(43560299-43560465)
chr5 (68-191)||(23203822-23203945)
chr5 (38-69)||(23198685-23198716)
[»] chr3 (4 HSPs)
chr3 (38-206)||(38327668-38327840)
chr3 (38-206)||(46073490-46073662)
chr3 (38-206)||(55488784-55488956)
chr3 (114-166)||(35029014-35029066)
[»] scaffold1284 (1 HSPs)
scaffold1284 (38-194)||(243-409)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 3220617 - 3220430
Alignment:
Q  19 caagattctttgctttgcatgaagcagtaactatgaatctcatcccaaaccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgt 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3220617 caagaatctttgctttgcatgaagcagtaactatgaatctcatcccaaaccacgagtggcgaaggagaacgaatcgcgaaagcagcgaaggctaaatcgt 3220518  T
Q  119 tgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220517 tgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatct 3220430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 38 - 206
Target Start/End: Complemental strand, 12505032 - 12504860
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  12505032 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 12504933  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatct 206  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||    
T  12504932 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatct 12504860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 38 - 206
Target Start/End: Original strand, 14680894 - 14681066
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  14680894 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 14680993  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatct 206  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||    
T  14680994 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatct 14681066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 38 - 157
Target Start/End: Complemental strand, 39587646 - 39587523
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaaccacg----agtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    ||||||||||| |||| |||||||||||||||       ||||||||| |||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  39587646 tgaagcagtaattatggatctcatcccaaacctgccctaagtggcgaatgagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 39587547  T
Q  134 gcagagcaaagaatcttgttcttc 157  Q
    ||||||||| ||||||||||||||    
T  39587546 gcagagcaatgaatcttgttcttc 39587523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 39587522 - 39587460
Alignment:
Q  144 gaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatct 206  Q
    |||||||||||||||||||||||||||||| | |||| |||||| |||||||||||| |||||    
T  39587522 gaatcttgttcttcccattcagtgtaagcaagattctccgttccagcttcgcgcgctgcatct 39587460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 34 - 199
Target Start/End: Complemental strand, 52888022 - 52887853
Alignment:
Q  34 tgcatgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatcc 129  Q
    |||||||||||||||||||| |||||||||||||||    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  52888022 tgcatgaagcagtaactatggatctcatcccaaacctgccacgagtggcgaaggagaacgaatcgcgaaagtagtgaaggcgaaatcgttgaaagaatcc 52887923  T
Q  130 aggtgcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgc 199  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||    
T  52887922 aggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttcctgcttcgtgcgc 52887853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 39 - 200
Target Start/End: Complemental strand, 29887263 - 29887098
Alignment:
Q  39 gaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtg 134  Q
    ||||||||||||||| |||||||||||||||    ||||||||||||||||||||||||||||||| || |||||  |||||||||||||||||||||||    
T  29887263 gaagcagtaactatggatctcatcccaaacctgccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggtgaaatcgttgaaagaatccaggtg 29887164  T
Q  135 cagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgct 200  Q
    |||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  29887163 cagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttcctgcttcgcgcgct 29887098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 38 - 206
Target Start/End: Original strand, 52608987 - 52609159
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  52608987 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 52609086  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatct 206  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||    
T  52609087 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatct 52609159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 172
Target Start/End: Complemental strand, 13728805 - 13728701
Alignment:
Q  68 ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtg 167  Q
    ||||||||| || || || ||||| ||||||||||| |||| | |||| ||||| | |||||| ||||| || | ||||||||||||||||||||| |||    
T  13728805 ccacgagtgacggagaagcacgaaacgcgaaagcagagaagacgaaatagttgataaaatccatgtgcaaaggagagaatcttgttcttcccattcggtg 13728706  T
Q  168 taagc 172  Q
    |||||    
T  13728705 taagc 13728701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 38 - 206
Target Start/End: Complemental strand, 173825 - 173653
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  173825 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 173726  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatct 206  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||    
T  173725 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatct 173653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 38 - 206
Target Start/End: Complemental strand, 144031 - 143859
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | |||||| ||||||||||||| |||||||| || |||||| | ||||||||||||||||||||    
T  144031 tgaagcagtaactatggatctcatcccaaacctgccaagagtggagaaggagaacgaaccgcgaaagtagcgaaggcgagatcgttgaaagaatccaggt 143932  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatct 206  Q
    || |||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||| |||| |||||    
T  143931 gctgagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcacgctgcatct 143859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 38 - 206
Target Start/End: Complemental strand, 44198209 - 44198037
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  44198209 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 44198110  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatct 206  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||    
T  44198109 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatct 44198037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 38 - 206
Target Start/End: Complemental strand, 20793751 - 20793579
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| | ||||||||||||||||||||    
T  20793751 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgatatcgttgaaagaatccaggt 20793652  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatct 206  Q
    ||||||||| |||||||||||||||||||||||||||||| | |||| |||||| |||||||||||| |||||    
T  20793651 gcagagcaatgaatcttgttcttcccattcagtgtaagcatgattctccgttccagcttcgcgcgctgcatct 20793579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 38 - 206
Target Start/End: Original strand, 23928942 - 23929114
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| |||||||||||||||| |||||    
T  23928942 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaattcaggt 23929041  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatct 206  Q
    ||||||||| |||||||||||||||||||||||||||||||| || | |||||| |||||||||||| |||||    
T  23929042 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattatccgttccagcttcgcgcgctgcatct 23929114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 38 - 206
Target Start/End: Original strand, 48513409 - 48513581
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  48513409 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 48513508  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatct 206  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||    
T  48513509 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatct 48513581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 38 - 206
Target Start/End: Original strand, 3718203 - 3718375
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    ||||||||||||| || |||||||||||||||    ||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  3718203 tgaagcagtaactgtggatctcatcccaaacctgccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcaaaatcgttgaaagaatccaggt 3718302  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatct 206  Q
    ||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||| |||||    
T  3718303 gcagagcaatgaatcttgttcttcccattcggtgtaagcaggattcttcgttccagcttcgcgtgctgcatct 3718375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 38 - 206
Target Start/End: Complemental strand, 42105457 - 42105285
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| ||  ||||| ||||||||||||||||||||||    
T  42105457 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagccaaggcgaaatcgttgaaagaatccaggt 42105358  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatct 206  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||  ||||| |||||||||||| |||||    
T  42105357 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctcggttccagcttcgcgcgctgcatct 42105285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 38 - 200
Target Start/End: Original strand, 48727851 - 48728017
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  48727851 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 48727950  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgct 200  Q
    ||||||||| ||||||||||||||||||| |||||||||||| |||| |||||| |||| |||||||    
T  48727951 gcagagcaatgaatcttgttcttcccatttagtgtaagcaggattctccgttccagctttgcgcgct 48728017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 34529808 - 34529860
Alignment:
Q  114 atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagt 166  Q
    ||||| ||||||||||| || |||||||| |||||||| ||||||||||||||    
T  34529808 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagt 34529860  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 45574882 - 45574934
Alignment:
Q  114 atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagt 166  Q
    ||||| ||||||||||| || |||||||| |||||||| ||||||||||||||    
T  45574882 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagt 45574934  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 17990492 - 17990443
Alignment:
Q  114 atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattc 163  Q
    ||||| ||||||||||| || |||||||| |||||||| |||||||||||    
T  17990492 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattc 17990443  T

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Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 38 - 206
Target Start/End: Complemental strand, 29652086 - 29651914
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  29652086 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 29651987  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatct 206  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||    
T  29651986 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatct 29651914  T

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Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 38 - 206
Target Start/End: Original strand, 36678940 - 36679112
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  36678940 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 36679039  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatct 206  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||    
T  36679040 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatct 36679112  T

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Target: chr5; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 38 - 206
Target Start/End: Complemental strand, 36662838 - 36662666
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||| | ||||||||||||||||||||||    
T  36662838 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaagccgaaatcgttgaaagaatccaggt 36662739  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatct 206  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||    
T  36662738 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatct 36662666  T

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Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 38 - 194
Target Start/End: Complemental strand, 43560465 - 43560299
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    ||||| ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||    
T  43560465 tgaaggagtaactatgaatctcatcccaaacctgccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcattgaaagaatccaggt 43560366  T
Q  134 gcagagcaaagaatcttgt------tcttcccattcagtgtaagcaggtttcttcgttcctgcttcg 194  Q
    ||||||||| |||||||||      |||||| |||||||||||||||| |||| |||||||||||||    
T  43560365 gcagagcaatgaatcttgttcttgttcttccaattcagtgtaagcaggattctccgttcctgcttcg 43560299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 191
Target Start/End: Original strand, 23203822 - 23203945
Alignment:
Q  68 ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtg 167  Q
    ||||||||||||||||||||||||||||||||| ||  ||||| ||||||||||||||||||||||| |||||||  |||| ||||||||||||||||||    
T  23203822 ccacgagtggcgaaggagaacgaatcgcgaaagtagcaaaggcgaaatcgttgaaagaatccaggtgtagagcaattaatcgtgttcttcccattcagtg 23203921  T
Q  168 taagcaggtttcttcgttcctgct 191  Q
    ||| |||| |||| ||||||||||    
T  23203922 taaacaggattctccgttcctgct 23203945  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 69
Target Start/End: Original strand, 23198685 - 23198716
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc 69  Q
    ||||||||||||||||||||||||||||||||    
T  23198685 tgaagcagtaactatgaatctcatcccaaacc 23198716  T

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Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 38 - 206
Target Start/End: Original strand, 38327668 - 38327840
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  38327668 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 38327767  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatct 206  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||    
T  38327768 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatct 38327840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 38 - 206
Target Start/End: Complemental strand, 46073662 - 46073490
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaa----ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||    ||| ||||||| ||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  46073662 tgaagcagtaactatggatctcatcccaaatctgccatgagtggcaaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 46073563  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatct 206  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||    
T  46073562 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatct 46073490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 38 - 206
Target Start/End: Complemental strand, 55488956 - 55488784
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaa----accacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    ||||||||||||| || ||||||||||||     |||||||||||||||||||||||| |||||||| || |||||| ||||||||||||||| ||||||    
T  55488956 tgaagcagtaactgtggatctcatcccaagcctgccacgagtggcgaaggagaacgaaccgcgaaagtagcgaaggcgaaatcgttgaaagaacccaggt 55488857  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatct 206  Q
    ||||||||| |||||||||||||||||||||||||||||||  |||| |||||| |||||||| ||| |||||    
T  55488856 gcagagcaatgaatcttgttcttcccattcagtgtaagcagaattctccgttccagcttcgcgtgctgcatct 55488784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 35029014 - 35029066
Alignment:
Q  114 atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagt 166  Q
    ||||| ||||||||||| || |||||||| |||||||| ||||||||||||||    
T  35029014 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagt 35029066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1284 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold1284
Description:

Target: scaffold1284; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 38 - 194
Target Start/End: Complemental strand, 409 - 243
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    ||||| ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||    
T  409 tgaaggagtaactatgaatctcatcccaaacctgccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcattgaaagaatccaggt 310  T
Q  134 gcagagcaaagaatcttgt------tcttcccattcagtgtaagcaggtttcttcgttcctgcttcg 194  Q
    ||||||||| |||||||||      |||||| |||||||||||||||| |||| |||||||||||||    
T  309 gcagagcaatgaatcttgttcttgttcttccaattcagtgtaagcaggattctccgttcctgcttcg 243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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