View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4801_low_2 (Length: 328)

Name: NF4801_low_2
Description: NF4801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4801_low_2
NF4801_low_2
[»] chr2 (4 HSPs)
chr2 (19-312)||(3220324-3220617)
chr2 (38-312)||(12504754-12505032)
chr2 (38-312)||(14680894-14681172)
chr2 (38-215)||(39587451-39587646)
[»] chr1 (4 HSPs)
chr1 (34-312)||(52887736-52888022)
chr1 (38-312)||(52608987-52609265)
chr1 (39-312)||(29886987-29887263)
chr1 (68-172)||(13728701-13728805)
[»] scaffold0014 (2 HSPs)
scaffold0014 (38-312)||(173547-173825)
scaffold0014 (38-312)||(143753-144031)
[»] chr8 (3 HSPs)
chr8 (38-312)||(44197931-44198209)
chr8 (38-304)||(20793481-20793751)
chr8 (38-312)||(23928942-23929220)
[»] chr7 (7 HSPs)
chr7 (38-312)||(48513409-48513687)
chr7 (38-312)||(42105179-42105457)
chr7 (38-312)||(48727851-48728129)
chr7 (38-304)||(3718203-3718472)
chr7 (114-166)||(34529808-34529860)
chr7 (114-166)||(45574882-45574934)
chr7 (114-163)||(17990443-17990492)
[»] chr6 (1 HSPs)
chr6 (38-312)||(29651808-29652086)
[»] chr5 (5 HSPs)
chr5 (38-312)||(36678940-36679218)
chr5 (38-312)||(36662560-36662838)
chr5 (68-305)||(23203822-23204059)
chr5 (38-295)||(43560199-43560465)
chr5 (38-69)||(23198685-23198716)
[»] chr3 (4 HSPs)
chr3 (38-312)||(38327668-38327946)
chr3 (38-312)||(55488678-55488956)
chr3 (38-312)||(46073386-46073662)
chr3 (114-166)||(35029014-35029066)
[»] scaffold1284 (1 HSPs)
scaffold1284 (38-295)||(143-409)
[»] chr4 (1 HSPs)
chr4 (114-301)||(56288593-56288780)
[»] scaffold0318 (1 HSPs)
scaffold0318 (144-304)||(19891-20051)


Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 3220617 - 3220324
Alignment:
Q  19 caagattctttgctttgcatgaagcagtaactatgaatctcatcccaaaccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgt 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3220617 caagaatctttgctttgcatgaagcagtaactatgaatctcatcccaaaccacgagtggcgaaggagaacgaatcgcgaaagcagcgaaggctaaatcgt 3220518  T
Q  119 tgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaacc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220517 tgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaacc 3220418  T
Q  219 ggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcatatcat 312  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220417 ggtggaatctgaggtgaaatcacaaatttcaccgtttttgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcatatcat 3220324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 38 - 312
Target Start/End: Complemental strand, 12505032 - 12504754
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  12505032 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 12504933  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggt 233  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | ||||    
T  12504932 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggt 12504833  T
Q  234 gaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcatatcat 312  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12504832 gaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccattgaaggtagttcgtatcat 12504754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 38 - 312
Target Start/End: Original strand, 14680894 - 14681172
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  14680894 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 14680993  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggt 233  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | ||||    
T  14680994 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggt 14681093  T
Q  234 gaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcatatcat 312  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14681094 gaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccattgaaggtagttcgtatcat 14681172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 38 - 215
Target Start/End: Complemental strand, 39587646 - 39587451
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaaccacg----agtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    ||||||||||| |||| |||||||||||||||       ||||||||| |||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  39587646 tgaagcagtaattatggatctcatcccaaacctgccctaagtggcgaatgagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 39587547  T
Q  134 gcagagcaaagaatcttgtt--------------cttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataa 215  Q
    ||||||||| ||||||||||              |||||||||||||||||||| | |||| |||||| |||||||||||| ||||||||||||||    
T  39587546 gcagagcaatgaatcttgttcttcgaatcttgttcttcccattcagtgtaagcaagattctccgttccagcttcgcgcgctgcatctgtgagataa 39587451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 34 - 312
Target Start/End: Complemental strand, 52888022 - 52887736
Alignment:
Q  34 tgcatgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatcc 129  Q
    |||||||||||||||||||| |||||||||||||||    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  52888022 tgcatgaagcagtaactatggatctcatcccaaacctgccacgagtggcgaaggagaacgaatcgcgaaagtagtgaaggcgaaatcgttgaaagaatcc 52887923  T
Q  130 aggtgcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgctt----cgcgcgcttcatctgtgagataaaccggtggaa 225  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||    |||||||| || |||||||||||||||||||||    
T  52887922 aggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttcctgcttcgtgcgcgcgctgcaactgtgagataaaccggtggaa 52887823  T
Q  226 tctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcatatcat 312  Q
    ||| |||||||||||||||||||||| | ||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  52887822 tctcaggtgaaatcacaaatttcaccatcttcattccgcgaagaacaccttcgacttgttgcttccattgaaggtagttcgtatcat 52887736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 38 - 312
Target Start/End: Original strand, 52608987 - 52609265
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  52608987 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 52609086  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggt 233  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | ||||    
T  52609087 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggt 52609186  T
Q  234 gaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcatatcat 312  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  52609187 gaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccattgaaggtagttcgtatcat 52609265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 39 - 312
Target Start/End: Complemental strand, 29887263 - 29886987
Alignment:
Q  39 gaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtg 134  Q
    ||||||||||||||| |||||||||||||||    ||||||||||||||||||||||||||||||| || |||||  |||||||||||||||||||||||    
T  29887263 gaagcagtaactatggatctcatcccaaacctgccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggtgaaatcgttgaaagaatccaggtg 29887164  T
Q  135 cagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtg 234  Q
    |||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||||| ||| |    
T  29887163 cagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttcctgcttcgcgcgctgcat-tgtgagataaaccggtggaatctcaggcg 29887065  T
Q  235 aaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcatatcat 312  Q
    ||||||||||||||||| | |||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  29887064 aaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgtttccattgaaggtagttcgtatcat 29886987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 172
Target Start/End: Complemental strand, 13728805 - 13728701
Alignment:
Q  68 ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtg 167  Q
    ||||||||| || || || ||||| ||||||||||| |||| | |||| ||||| | |||||| ||||| || | ||||||||||||||||||||| |||    
T  13728805 ccacgagtgacggagaagcacgaaacgcgaaagcagagaagacgaaatagttgataaaatccatgtgcaaaggagagaatcttgttcttcccattcggtg 13728706  T
Q  168 taagc 172  Q
    |||||    
T  13728705 taagc 13728701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 38 - 312
Target Start/End: Complemental strand, 173825 - 173547
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  173825 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 173726  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggt 233  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | ||||    
T  173725 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggt 173626  T
Q  234 gaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcatatcat 312  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  173625 gaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccattgaaggtagttcgtatcat 173547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 38 - 312
Target Start/End: Complemental strand, 144031 - 143753
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | |||||| ||||||||||||| |||||||| || |||||| | ||||||||||||||||||||    
T  144031 tgaagcagtaactatggatctcatcccaaacctgccaagagtggagaaggagaacgaaccgcgaaagtagcgaaggcgagatcgttgaaagaatccaggt 143932  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggt 233  Q
    || |||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||| |||| |||||||||||||||||| |||||||| ||||    
T  143931 gctgagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcacgctgcatctgtgagataaaccgatggaatctcaggt 143832  T
Q  234 gaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcatatcat 312  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  143831 gaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccattgaaggtagttcgtatcat 143753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 38 - 312
Target Start/End: Complemental strand, 44198209 - 44197931
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  44198209 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 44198110  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggt 233  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | ||||    
T  44198109 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggt 44198010  T
Q  234 gaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcatatcat 312  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44198009 gaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccattgaaggtagttcgtatcat 44197931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 38 - 304
Target Start/End: Complemental strand, 20793751 - 20793481
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| | ||||||||||||||||||||    
T  20793751 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgatatcgttgaaagaatccaggt 20793652  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggt 233  Q
    ||||||||| |||||||||||||||||||||||||||||| | |||| |||||| |||||||||||| ||||||||||||||||| ||||||| | ||||    
T  20793651 gcagagcaatgaatcttgttcttcccattcagtgtaagcatgattctccgttccagcttcgcgcgctgcatctgtgagataaacctgtggaatatcaggt 20793552  T
Q  234 gaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagtt 304  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20793551 gaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccattgaaggtagtt 20793481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 38 - 312
Target Start/End: Original strand, 23928942 - 23929220
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| |||||||||||||||| |||||    
T  23928942 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaattcaggt 23929041  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggt 233  Q
    ||||||||| |||||||||||||||||||||||||||||||| || | |||||| |||||||||||| ||||||||||||||| | ||||||| | ||||    
T  23929042 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattatccgttccagcttcgcgcgctgcatctgtgagataaatcagtggaatatcaggt 23929141  T
Q  234 gaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcatatcat 312  Q
    |||||||||||||||||| | |||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  23929142 gaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcaacttgttgcttccattgaaggtagttcgtatcat 23929220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 38 - 312
Target Start/End: Original strand, 48513409 - 48513687
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  48513409 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 48513508  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggt 233  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | ||||    
T  48513509 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggt 48513608  T
Q  234 gaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcatatcat 312  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48513609 gaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccattgaaggtagttcgtatcat 48513687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 38 - 312
Target Start/End: Complemental strand, 42105457 - 42105179
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| ||  ||||| ||||||||||||||||||||||    
T  42105457 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagccaaggcgaaatcgttgaaagaatccaggt 42105358  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggt 233  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||  ||||| |||||||||||| ||||||||||||||||||||||||||| ||||    
T  42105357 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctcggttccagcttcgcgcgctgcatctgtgagataaaccggtggaatctcaggt 42105258  T
Q  234 gaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcatatcat 312  Q
    |||||||||||||||||| | |||||| | |||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  42105257 gaaatcacaaatttcaccatcttcgttccacgaagaacaccttcaacttgttgcttccattgaaggtagttcgtatcat 42105179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 38 - 312
Target Start/End: Original strand, 48727851 - 48728129
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  48727851 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 48727950  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggt 233  Q
    ||||||||| ||||||||||||||||||| |||||||||||| |||| |||||| |||| ||||||| ||| ||||||||||||||||||||||| ||||    
T  48727951 gcagagcaatgaatcttgttcttcccatttagtgtaagcaggattctccgttccagctttgcgcgctgcatgtgtgagataaaccggtggaatctcaggt 48728050  T
Q  234 gaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcatatcat 312  Q
    |||||||||||||||||| | |||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  48728051 gaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgtttccattgaaggtagttcgtatcat 48728129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 38 - 304
Target Start/End: Original strand, 3718203 - 3718472
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    ||||||||||||| || |||||||||||||||    ||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  3718203 tgaagcagtaactgtggatctcatcccaaacctgccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcaaaatcgttgaaagaatccaggt 3718302  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggt 233  Q
    ||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||| ||||||||||||||||||||||||||| ||||    
T  3718303 gcagagcaatgaatcttgttcttcccattcggtgtaagcaggattcttcgttccagcttcgcgtgctgcatctgtgagataaaccggtggaatctcaggt 3718402  T
Q  234 gaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagtt 304  Q
    |||||||||||||||||| | |||||| |||| |||||||||||||||||||||||||||| |||||||||    
T  3718403 gaaatcacaaatttcaccatcttcgttccgcg-agaacaccttcgacttgttgcttccattaaaggtagtt 3718472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 34529808 - 34529860
Alignment:
Q  114 atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagt 166  Q
    ||||| ||||||||||| || |||||||| |||||||| ||||||||||||||    
T  34529808 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagt 34529860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 45574882 - 45574934
Alignment:
Q  114 atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagt 166  Q
    ||||| ||||||||||| || |||||||| |||||||| ||||||||||||||    
T  45574882 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagt 45574934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 17990492 - 17990443
Alignment:
Q  114 atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattc 163  Q
    ||||| ||||||||||| || |||||||| |||||||| |||||||||||    
T  17990492 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattc 17990443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 38 - 312
Target Start/End: Complemental strand, 29652086 - 29651808
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  29652086 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 29651987  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggt 233  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | ||||    
T  29651986 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggt 29651887  T
Q  234 gaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcatatcat 312  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29651886 gaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccattgaaggtagttcgtatcat 29651808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 38 - 312
Target Start/End: Original strand, 36678940 - 36679218
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  36678940 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 36679039  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggt 233  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | ||||    
T  36679040 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggt 36679139  T
Q  234 gaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcatatcat 312  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36679140 gaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccattgaaggtagttcgtatcat 36679218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 38 - 312
Target Start/End: Complemental strand, 36662838 - 36662560
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||| | ||||||||||||||||||||||    
T  36662838 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaagccgaaatcgttgaaagaatccaggt 36662739  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggt 233  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | ||||    
T  36662738 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggt 36662639  T
Q  234 gaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcatatcat 312  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36662638 gaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccattgaaggtagttcgtatcat 36662560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 68 - 305
Target Start/End: Original strand, 23203822 - 23204059
Alignment:
Q  68 ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtg 167  Q
    ||||||||||||||||||||||||||||||||| ||  ||||| ||||||||||||||||||||||| |||||||  |||| ||||||||||||||||||    
T  23203822 ccacgagtggcgaaggagaacgaatcgcgaaagtagcaaaggcgaaatcgttgaaagaatccaggtgtagagcaattaatcgtgttcttcccattcagtg 23203921  T
Q  168 taagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaa 267  Q
    ||| |||| |||| |||||||||| | || ||| ||| | ||||||||||||||||||||| |||||||||||||||||||||| | |||||| ||||||    
T  23203922 taaacaggattctccgttcctgctccacgtgctgcatttatgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcgaa 23204021  T
Q  268 gaacaccttcgacttgttgcttccattgaaggtagttc 305  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23204022 gaacaccttcgacttgttgcttccattgaaggtagttc 23204059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 38 - 295
Target Start/End: Complemental strand, 43560465 - 43560199
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    ||||| ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||    
T  43560465 tgaaggagtaactatgaatctcatcccaaacctgccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcattgaaagaatccaggt 43560366  T
Q  134 gcagagcaaagaatcttgttctt------cccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatc 227  Q
    ||||||||| |||||||||||||      || |||||||||||||||| |||| ||||||||||||| | ||| ||||||||||||||||||||||||||    
T  43560365 gcagagcaatgaatcttgttcttgttcttccaattcagtgtaagcaggattctccgttcctgcttcgtgtgctgcatctgtgagataaaccggtggaatc 43560266  T
Q  228 tgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattg 295  Q
    | |||||||||| ||||||||||| | |||||| |||||||||||||||||| |||||||||||||||    
T  43560265 tcaggtgaaatcgcaaatttcaccatcttcgttccgcgaagaacaccttcga-ttgttgcttccattg 43560199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 69
Target Start/End: Original strand, 23198685 - 23198716
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc 69  Q
    ||||||||||||||||||||||||||||||||    
T  23198685 tgaagcagtaactatgaatctcatcccaaacc 23198716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 38 - 312
Target Start/End: Original strand, 38327668 - 38327946
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  38327668 tgaagcagtaactatggatctcatcccaaacctgccatgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 38327767  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggt 233  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | ||||    
T  38327768 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggt 38327867  T
Q  234 gaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcatatcat 312  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38327868 gaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccattgaaggtagttcgtatcat 38327946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 38 - 312
Target Start/End: Complemental strand, 55488956 - 55488678
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaa----accacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    ||||||||||||| || ||||||||||||     |||||||||||||||||||||||| |||||||| || |||||| ||||||||||||||| ||||||    
T  55488956 tgaagcagtaactgtggatctcatcccaagcctgccacgagtggcgaaggagaacgaaccgcgaaagtagcgaaggcgaaatcgttgaaagaacccaggt 55488857  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggt 233  Q
    ||||||||| |||||||||||||||||||||||||||||||  |||| |||||| |||||||| ||| ||||||||||||||||||||||||||| ||||    
T  55488856 gcagagcaatgaatcttgttcttcccattcagtgtaagcagaattctccgttccagcttcgcgtgctgcatctgtgagataaaccggtggaatctcaggt 55488757  T
Q  234 gaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcatatcat 312  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  55488756 gaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccattgaaggtagttcgtatcat 55488678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 38 - 312
Target Start/End: Complemental strand, 46073662 - 46073386
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaa----ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    |||||||||||||||| |||||||||||||    ||| ||||||| ||||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  46073662 tgaagcagtaactatggatctcatcccaaatctgccatgagtggcaaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggt 46073563  T
Q  134 gcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggt 233  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||||||||||||||  |||||||| ||||    
T  46073562 gcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcgctgcatctgtgagataaacc--tggaatctcaggt 46073465  T
Q  234 gaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcatatcat 312  Q
    |||||||||||||||| | | |||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  46073464 gaaatcacaaatttcaacatcttcgttccgcgaagaacaccttcgacttgttgtttccattgaaggtagttcgtatcat 46073386  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 35029014 - 35029066
Alignment:
Q  114 atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagt 166  Q
    ||||| ||||||||||| || |||||||| |||||||| ||||||||||||||    
T  35029014 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagt 35029066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1284 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold1284
Description:

Target: scaffold1284; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 38 - 295
Target Start/End: Complemental strand, 409 - 143
Alignment:
Q  38 tgaagcagtaactatgaatctcatcccaaacc----acgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggt 133  Q
    ||||| ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||    
T  409 tgaaggagtaactatgaatctcatcccaaacctgccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcattgaaagaatccaggt 310  T
Q  134 gcagagcaaagaatcttgttctt------cccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatc 227  Q
    ||||||||| |||||||||||||      || |||||||||||||||| |||| ||||||||||||| | ||| ||||||||||||||||||||||||||    
T  309 gcagagcaatgaatcttgttcttgttcttccaattcagtgtaagcaggattctccgttcctgcttcgtgtgctgcatctgtgagataaaccggtggaatc 210  T
Q  228 tgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattg 295  Q
    | |||||||||| ||||||||||| | |||||| |||||||||||||||||| |||||||||||||||    
T  209 tcaggtgaaatcgcaaatttcaccatcttcgttccgcgaagaacaccttcga-ttgttgcttccattg 143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 114 - 301
Target Start/End: Original strand, 56288593 - 56288780
Alignment:
Q  114 atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagat 213  Q
    ||||| || |||||||| || || |||| ||||||||||||||||||||| || || || || |||| |||||| ||  |||| ||  | || |||||||    
T  56288593 atcgtggagagaatccatgtacacagcagagaatcttgttcttcccattcggtatacgccggattctccgttccggcggcgcgagcagcgtcggtgagat 56288692  T
Q  214 aaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggta 301  Q
    | |||||||||||||| || ||||  |||  ||||||| | |||||  |||| | ||| |||||||| ||||| ||||||||||||||    
T  56288693 acaccggtggaatctgcggcgaaacgacatgtttcaccatcttcgtaccgcgcaaaactccttcgacctgttgtttccattgaaggta 56288780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 144 - 304
Target Start/End: Original strand, 19891 - 20051
Alignment:
Q  144 gaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaa 243  Q
    |||||||| |||||||||||||  || ||||| || | | |||| |||||||| ||  ||| | ||||||||||||||||||| || || |||| || ||    
T  19891 gaatcttgctcttcccattcagaatacgcagggttttccattccagcttcgcgagcgacatgtttgagataaaccggtggaatttgtggagaaaccataa 19990  T
Q  244 atttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagtt 304  Q
    |||||||| ||||  || | || |  |||||||| ||||| ||||||||||  ||||||||    
T  19991 atttcaccatttttcttcctcgcaacacaccttctacttgctgcttccattagaggtagtt 20051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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