View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4801_low_3 (Length: 280)
Name: NF4801_low_3
Description: NF4801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4801_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 47 - 261
Target Start/End: Complemental strand, 40093094 - 40092880
Alignment:
| Q |
47 |
tgaaactattctaaaaggcctggctaaaagaacagcttccaaacaaatcaaactcttggggtgatgatgggaggaacaaaacaccagttaccaaaagaag |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40093094 |
tgaaactattctaaaaggcctggctaaaagaacagcctccaaacaaatcaaactcttggggtgatgatgggaggaacaaaacaccagttaccaaaagaag |
40092995 |
T |
|
| Q |
147 |
ttggtgagaacaaattcatttccaacaaaccaggtgtgattacctcctcatcctgatcagaattctttccaaaatattcagcttgaaagtactgatacca |
246 |
Q |
| |
|
||||||||| |||||||| ||||||||||| ||| || ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40092994 |
ttggtgagagcaaattcaattccaacaaactaggggttattacctcctcttcctgatcattattctttccaaaatattcagcttgaaagtactgatacca |
40092895 |
T |
|
| Q |
247 |
gctattagtagtact |
261 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
40092894 |
gctattagtagtact |
40092880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 73 - 261
Target Start/End: Complemental strand, 40125540 - 40125352
Alignment:
| Q |
73 |
aaagaacagcttccaaacaaatcaaactcttggggtgatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaac |
172 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
40125540 |
aaagagcagcttccaaacaaatcaaactcttggggtgatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagagcaaattcaattccaac |
40125441 |
T |
|
| Q |
173 |
aaaccaggtgtgattacctcctcatcctgatcagaattctttccaaaatattcagcttgaaagtactgataccagctattagtagtact |
261 |
Q |
| |
|
|||| ||| || ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40125440 |
aaactaggggttattacctcctcttcctgatcattattctttccaaaatattcagcttgaaagtactgataccagctattagtagtact |
40125352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 73 - 259
Target Start/End: Complemental strand, 40121888 - 40121705
Alignment:
| Q |
73 |
aaagaacagcttccaaacaaatcaaactcttggggtgatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaac |
172 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40121888 |
aaagaacagcttccaaacagatcaaactcttgggttcatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaac |
40121789 |
T |
|
| Q |
173 |
aaaccaggtgtgattacctcctcatcctgatcagaattctttccaaaatattcagcttgaaagtactgataccagctattagtagta |
259 |
Q |
| |
|
|||| |||||| |||||||||| ||| ||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
40121788 |
aaactaggtgttattacctccttttcc---tcataattctttccaaaatattcagcttgaaagtattgataccagctggtagtagta |
40121705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University