View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4802-Insertion-2 (Length: 837)

Name: NF4802-Insertion-2
Description: NF4802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4802-Insertion-2
NF4802-Insertion-2
[»] chr8 (14 HSPs)
chr8 (115-835)||(38208954-38209674)
chr8 (115-315)||(36408140-36408339)
chr8 (148-316)||(5923844-5924016)
chr8 (73-264)||(36054766-36054958)
chr8 (115-315)||(8251229-8251429)
chr8 (139-280)||(2207788-2207928)
chr8 (123-278)||(31658854-31659008)
chr8 (116-280)||(16890258-16890425)
chr8 (118-314)||(1445349-1445545)
chr8 (166-285)||(2152364-2152484)
chr8 (123-213)||(11778039-11778129)
chr8 (24-57)||(13639365-13639398)
chr8 (24-57)||(13739778-13739811)
chr8 (194-281)||(30870730-30870817)
[»] chr1 (13 HSPs)
chr1 (115-315)||(32715686-32715885)
chr1 (115-275)||(17971357-17971517)
chr1 (116-315)||(27442327-27442525)
chr1 (130-316)||(28723918-28724103)
chr1 (130-315)||(13603078-13603265)
chr1 (228-316)||(45691555-45691643)
chr1 (115-281)||(36437188-36437354)
chr1 (115-279)||(42745537-42745700)
chr1 (146-264)||(39150187-39150304)
chr1 (123-280)||(9851803-9851959)
chr1 (123-284)||(28165111-28165272)
chr1 (123-254)||(11435554-11435684)
chr1 (130-195)||(17988358-17988423)
[»] chr4 (12 HSPs)
chr4 (123-314)||(25376800-25376991)
chr4 (116-217)||(54863918-54864019)
chr4 (139-280)||(31707342-31707480)
chr4 (131-277)||(18838761-18838906)
chr4 (183-263)||(25382411-25382491)
chr4 (116-251)||(34319546-34319680)
chr4 (115-268)||(42312403-42312564)
chr4 (123-221)||(21128097-21128195)
chr4 (117-181)||(33721704-33721768)
chr4 (199-281)||(30615193-30615275)
chr4 (795-836)||(39699856-39699897)
chr4 (123-280)||(47231563-47231718)
[»] chr6 (8 HSPs)
chr6 (73-312)||(19780181-19780421)
chr6 (129-315)||(6657886-6658070)
chr6 (128-315)||(9425498-9425686)
chr6 (160-280)||(34837140-34837260)
chr6 (116-315)||(180334-180533)
chr6 (209-280)||(12143709-12143780)
chr6 (115-281)||(606606-606772)
chr6 (116-261)||(7926799-7926944)
[»] chr2 (22 HSPs)
chr2 (134-314)||(14200323-14200503)
chr2 (123-314)||(7011096-7011284)
chr2 (146-315)||(32872365-32872534)
chr2 (130-275)||(31404954-31405098)
chr2 (115-313)||(40503868-40504066)
chr2 (123-280)||(38496474-38496631)
chr2 (115-315)||(38214106-38214306)
chr2 (116-308)||(16781256-16781447)
chr2 (183-315)||(45723872-45724004)
chr2 (221-315)||(34309311-34309405)
chr2 (133-222)||(34262721-34262809)
chr2 (123-278)||(40442719-40442874)
chr2 (124-274)||(39063590-39063740)
chr2 (130-274)||(3268806-3268950)
chr2 (130-274)||(3269365-3269509)
chr2 (130-274)||(3269924-3270068)
chr2 (200-316)||(21794914-21795031)
chr2 (134-275)||(44173634-44173776)
chr2 (123-215)||(4015843-4015934)
chr2 (115-274)||(19285873-19286032)
chr2 (23-62)||(27075023-27075062)
chr2 (123-196)||(3711912-3711984)
[»] chr7 (15 HSPs)
chr7 (115-312)||(14568350-14568547)
chr7 (123-314)||(10599706-10599897)
chr7 (72-280)||(41508049-41508258)
chr7 (123-217)||(42935455-42935549)
chr7 (123-205)||(17757476-17757558)
chr7 (218-314)||(10409789-10409887)
chr7 (160-315)||(15033262-15033413)
chr7 (123-280)||(20949074-20949230)
chr7 (118-267)||(7307436-7307586)
chr7 (197-279)||(17757376-17757459)
chr7 (189-307)||(14658737-14658855)
chr7 (130-256)||(46341505-46341631)
chr7 (188-272)||(13777705-13777790)
chr7 (134-175)||(22527193-22527234)
chr7 (21-50)||(28923049-28923078)
[»] chr3 (21 HSPs)
chr3 (147-314)||(30041262-30041429)
chr3 (155-314)||(30577821-30577979)
chr3 (183-315)||(43105101-43105234)
chr3 (168-314)||(35104715-35104860)
chr3 (123-314)||(22923629-22923823)
chr3 (199-316)||(49983785-49983904)
chr3 (130-212)||(49983564-49983646)
chr3 (72-224)||(32211835-32211988)
chr3 (115-315)||(45261357-45261554)
chr3 (117-280)||(17003567-17003729)
chr3 (123-193)||(43105935-43106004)
chr3 (124-237)||(25295085-25295198)
chr3 (130-314)||(40344888-40345070)
chr3 (130-274)||(41559995-41560133)
chr3 (115-281)||(46918452-46918617)
chr3 (219-316)||(42279190-42279287)
chr3 (148-282)||(49787770-49787906)
chr3 (123-274)||(43320133-43320278)
chr3 (182-277)||(52596619-52596715)
chr3 (123-244)||(38854615-38854736)
chr3 (253-314)||(28695677-28695738)
[»] scaffold0006 (1 HSPs)
scaffold0006 (130-315)||(131735-131922)
[»] scaffold0015 (1 HSPs)
scaffold0015 (115-315)||(38788-38987)
[»] scaffold1809 (1 HSPs)
scaffold1809 (116-281)||(486-651)
[»] scaffold0024 (1 HSPs)
scaffold0024 (123-314)||(154341-154532)
[»] chr5 (8 HSPs)
chr5 (161-280)||(2225619-2225738)
chr5 (160-224)||(3257255-3257319)
chr5 (116-274)||(11691055-11691211)
chr5 (130-261)||(6688795-6688928)
chr5 (166-280)||(18705043-18705157)
chr5 (146-279)||(11983573-11983705)
chr5 (178-275)||(14417912-14418009)
chr5 (221-274)||(14917822-14917875)
[»] scaffold0836 (1 HSPs)
scaffold0836 (115-274)||(3015-3174)
[»] scaffold0088 (1 HSPs)
scaffold0088 (123-273)||(51274-51424)


Alignment Details
Target: chr8 (Bit Score: 553; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 115 - 835
Target Start/End: Complemental strand, 38209674 - 38208954
Alignment:
Q  115 tttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattag 214  Q
    ||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  38209674 tttggtcatatttataagaaaaagtcacaacttttaaggtacatttattgtttaaaagacttctctaaccctcatttaatgttggtcttttcaatattag 38209575  T
Q  215 tgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgattttt 314  Q
    ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| ||| ||  | ||||||||||||||||||||||||||    
T  38209574 tgggtatattaaatacttcacaaatttttaaaagggtatatttataaaaatatttaaaaaatttcaacaagtaatgattatcttggttttgatgattttt 38209475  T
Q  315 gannnnnnnnnnncttatataaaggaccagagtgagagtatttagaaccggagggagtatacaactaactcttgtgctcttgcatgtgtctaccctaggt 414  Q
    ||           ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38209474 gatttttttt---cttatataaaggaccggagtgagagtatttaggaccggagggagtatacaactaactcttgtgctcttgcatgtgtctaccctaggt 38209378  T
Q  415 ggtgggcactagtcgcattaaagaagttgctcaaacccctaggattgttgcaaccaataaaatgaagagtcaatttatcatgcatcatattcttaactgc 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38209377 ggtgggcactagtcgcattaaagaagttgctcaaacccctaggatttttgcaaccaataaaatgaagagtcaatttatcatgcatcaaattcttaactgc 38209278  T
Q  515 ttcacctacattttatcaaaggagggtcttcataaagaattttcatgtccatctactacgcatagcaactggaccaaatcacctctttcagatggaaatt 614  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38209277 ttcccctacattttatcaaaggagggtcttcataaagaattttcatgtccatctactacgcatagcaactggaccaaatcacctctttcagatggaaatt 38209178  T
Q  615 tagctttaatgcggactccaaaaatcaaaacagtgccatttccaaaatcttggcaagagataggattccatcactaccaaatttgaacagatatttaat- 713  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||     
T  38209177 tagctttaatgcggactccaaaaatcaaaacagtgccatttccaaaatctt-gcaagagataggattccatcactgccaaatttgaacagatatttaatt 38209079  T
Q  714 --taataataatcatagatgatagtaatatctgttggggggagaaaagtatttataaactttgatgataagttagatcattgatattttttaggtctaat 811  Q
      ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||    
T  38209078 aataataataatcatagatgatagtaatatctgttaggggaagaaaagtatttataaactttgatgataagtcagatcattgatattttttagatcaaat 38208979  T
Q  812 gcatctaaa-atcctttaagttttt 835  Q
    |||| |||| ||||||||| |||||    
T  38208978 gcatttaaagatcctttaaattttt 38208954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 115 - 315
Target Start/End: Complemental strand, 36408339 - 36408140
Alignment:
Q  115 tttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattag 214  Q
    ||||||| ||| || ||||||||||||||| ||| |||||||||||||||||||| | |||| | |||||||  ||||||||| ||||||| ||||||||    
T  36408339 tttggtcttatatataagaaaaagtcacaacttt-aaggtacatttattgtttaacaaacttttttaaccctcgtttaatgtttgtctttttaatattag 36408241  T
Q  215 tgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgattttt 314  Q
    ||| |||| | ||||||| ||||||||||| |||||| |||||||||||| ||| ||||||||| ||  || | | ||| |||| |||||||||||||||    
T  36408240 tggatataattaatacttaacaaatttttatgagggtatatttgtaaaaacattcaaaaaattataactactaataattgtcttagttttgatgattttt 36408141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 148 - 316
Target Start/End: Original strand, 5923844 - 5924016
Alignment:
Q  148 ttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaatacttcacaaatttttaaga 247  Q
    |||||||||||||||||||||||    || ||||||||| |||||||||| ||||||| |||||||||| ||||| | ||||||| ||||||||||| ||    
T  5923844 ttaaggtacatttattgtttaaattttttttctaaccctcatttaatgtttgtctttttaatattagtgtgtataattaatactttacaaatttttatga 5923943  T
Q  248 ggg----tgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgatttttga 316  Q
    |||    | ||||| |||||| |||||||||||||| |  || | ||||||||||||||||||||||||||||    
T  5923944 gggcatatatatttttaaaaacatttaaaaaattactaccactaatgattatcttggttttgatgatttttga 5924016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 73 - 264
Target Start/End: Original strand, 36054766 - 36054958
Alignment:
Q  73 tacttcctccggttctatatataagaaaattttcnnnnnnnnttt-ggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaa 171  Q
    ||||||||||| | ||||||||||||||||||||        ||| |||| |||||| ||||||| ||||||| |||||||||| |||||||||||||||    
T  36054766 tacttcctccgatcctatatataagaaaattttcaaaataatttttggtcctatttataagaaaatgtcacaacttttaaggtatatttattgtttaaaa 36054865  T
Q  172 gacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaa 264  Q
    ||||| | || |||||| |||||||| ||||||| ||||||||||| | |||| |||||||| ||| |||| |  ||||| ||||| ||||||    
T  36054866 gacttttataccccttaattaatgtttgtctttttaatattagtggatgtatttaatacttcccaatttttaataagggtatatttataaaaa 36054958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 115 - 315
Target Start/End: Original strand, 8251229 - 8251429
Alignment:
Q  115 tttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattag 214  Q
    ||||||| |||||| |||||||  |||||| |||||||||  | |||||| ||||||||| | | |  || |||||||||| | ||||||| ||||||||    
T  8251229 tttggtcctatttataagaaaatatcacaacttttaaggtgtaattattgcttaaaagacctttttccccattatttaatggttgtctttttaatattag 8251328  T
Q  215 tgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgattttt 314  Q
    || || |||| ||| |||||||| |||||| |||||| |||||||||||||||| |||||| |||| |||  | ||| | | |||||||||||| |||||    
T  8251329 tgagtttatttaatgcttcacaattttttatgagggtatatttgtaaaaatattcaaaaaactacactaattaatgagtgtattggttttgatgtttttt 8251428  T
Q  315 g 315  Q
    |    
T  8251429 g 8251429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 139 - 280
Target Start/End: Original strand, 2207788 - 2207928
Alignment:
Q  139 tcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaatacttcacaaa 238  Q
    |||||||||||||| | || ||||||  | ||||| || |||| ||||||||||||||| || |||| ||||||| ||||| |||| ||| |||||| ||    
T  2207788 tcacaatttttaagatgcagttattgcgttaaagaattttctaccccttatttaatgtttgtatttttaatattaatgggtgtatttaatgcttcac-aa 2207886  T
Q  239 tttttaagagggtgtatttgtaaaaatatttaaaaaattaca 280  Q
    |||||| |||||| |||||||||||||||| ||||| |||||    
T  2207887 tttttatgagggtatatttgtaaaaatattcaaaaagttaca 2207928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 123 - 278
Target Start/End: Original strand, 31658854 - 31659008
Alignment:
Q  123 tatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtata 222  Q
    |||||| |||||||  |||||| ||||||| |  | |||||||||||||||||| | ||||| |||||||||||| ||||||| |||| |||||| | ||    
T  31658854 tatttataagaaaatatcacaacttttaagatgtagttattgtttaaaagacttttttaacctttatttaatgtttgtctttttaatactagtggatgta 31658953  T
Q  223 ttaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaatta 278  Q
    || ||| || ||  |||||||| |||| | |||||||||||||||| |||||||||    
T  31658954 tttaatgctgca-taatttttatgaggatatatttgtaaaaatattcaaaaaatta 31659008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 116 - 280
Target Start/End: Complemental strand, 16890425 - 16890258
Alignment:
Q  116 ttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttca---atatt 212  Q
    |||||| |||||| | |||||  |||||| |||||||||| | ||| ||||| |||||||| |||| || ||||||| |||| || |||| |   |||||    
T  16890425 ttggtcctatttatatgaaaatatcacaacttttaaggtatagttagtgtttcaaagacttttctaccctttatttattgtttgtttttttataaatatt 16890326  T
Q  213 agtgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattaca 280  Q
    |||| || |||| |||  ||||||| |||||| |||||| |||||||||||||||| ||||| |||||    
T  16890325 agtgagtttatttaatgtttcacaattttttatgagggtatatttgtaaaaatattcaaaaagttaca 16890258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 314
Target Start/End: Original strand, 1445349 - 1445545
Alignment:
Q  118 ggtcgtatttaaaagaaaaagtcacaatttttaaggtacat-ttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtg 216  Q
    |||| |||||| ||||||| ||||||| |||||||||  |  |||||| ||||| ||||| |||| |||| ||||||||||  ||||||  |||||||||    
T  1445349 ggtcctatttataagaaaatgtcacaacttttaaggtgtaagttattgcttaaatgacttttctatccct-atttaatgtttctcttttagatattagtg 1445447  T
Q  217 ggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgattttt 314  Q
     || |||| |||  ||||||| |||| | || ||| ||||||||||| |||| ||||||||||| ||| || ||| |   ||| ||||||||||||||    
T  1445448 agtgtatttaatgtttcacaatttttaatgaaggtatatttgtaaaagtattcaaaaaattacattaatcaatgaatgcattgattttgatgattttt 1445545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 166 - 285
Target Start/End: Original strand, 2152364 - 2152484
Alignment:
Q  166 ttaaaagacttatctaacccttatttaatgttggtc-ttttcaatattagtgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaa 264  Q
    ||||||||||| |||| |||||||||||||||  || |||| |||||||| | || |||| ||| |||||||| ||||||  ||||| ||||| ||||||    
T  2152364 ttaaaagacttttctaccccttatttaatgtttatcttttttaatattagcgagtctatttaatgcttcacaattttttataagggtatatttataaaaa 2152463  T
Q  265 tatttaaaaaattacaataac 285  Q
    |||| ||||| ||||| ||||    
T  2152464 tattcaaaaagttacactaac 2152484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 213
Target Start/End: Original strand, 11778039 - 11778129
Alignment:
Q  123 tatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatatta 213  Q
    |||||| ||||||| ||||||||||||||| |  || ||||   ||||||||||   |||||||||||||||||| ||||||| |||||||    
T  11778039 tatttataagaaaaggtcacaatttttaagatgtatctatttcgtaaaagactttcttaacccttatttaatgtttgtctttttaatatta 11778129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 13639398 - 13639365
Alignment:
Q  24 actaaatacatcatttattcaataaacataaaaa 57  Q
    ||||||||||||||||||||||||||||||||||    
T  13639398 actaaatacatcatttattcaataaacataaaaa 13639365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 13739811 - 13739778
Alignment:
Q  24 actaaatacatcatttattcaataaacataaaaa 57  Q
    ||||||||||||||||||||||||||||||||||    
T  13739811 actaaatacatcatttattcaataaacataaaaa 13739778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 281
Target Start/End: Complemental strand, 30870817 - 30870730
Alignment:
Q  194 tgttggtcttttcaatattagtgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaa 281  Q
    |||| ||| ||| ||||||||||| |||||| |||  ||||||| ||||||  ||||| ||||||| |||||||||||| | ||||||    
T  30870817 tgtttgtcattttaatattagtggatatatttaatgtttcacaattttttataagggtatatttgtcaaaatatttaaatacttacaa 30870730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 1e-61; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 115 - 315
Target Start/End: Original strand, 32715686 - 32715885
Alignment:
Q  115 tttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattag 214  Q
    ||||||| |||||| ||||||||||||||| ||||||||| ||||||||||||||||| ||| |||| |||| ||||||||||| |||||||||||||||    
T  32715686 tttggtcctatttataagaaaaagtcacaaattttaaggt-catttattgtttaaaagtcttttctagccctcatttaatgttgatcttttcaatattag 32715784  T
Q  215 tgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgattttt 314  Q
    |||||||||| ||||||||||||||||||| |||| | |||||||||||| ||| |||||||||||| ||| | ||||| ||||||||||||||||||||    
T  32715785 tgggtatatttaatacttcacaaatttttatgaggatatatttgtaaaaacattcaaaaaattacaacaactaatgattgtcttggttttgatgattttt 32715884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 115 - 275
Target Start/End: Complemental strand, 17971517 - 17971357
Alignment:
Q  115 tttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattag 214  Q
    ||||||| |||||| ||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  17971517 tttggtcctatttataagaaaaagtcacaacttttaaggtatatttattgtttaaaagacttttctaaccctcatttaatgttggtcttttcaatattag 17971418  T
Q  215 tgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaa 275  Q
    || ||||||| |||||||||||||||||||||||||| |||||||||||| ||| ||||||    
T  17971417 tgtgtatatttaatacttcacaaatttttaagagggtatatttgtaaaaacattcaaaaaa 17971357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 116 - 315
Target Start/End: Complemental strand, 27442525 - 27442327
Alignment:
Q  116 ttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagt 215  Q
    |||||| |||||| |||||||| |||||| |||||| ||| ||||| |||||||||||||| ||||||||| ||||||||||||||||| |||||||| |    
T  27442525 ttggtcctatttataagaaaaaatcacaacttttaaagtatatttagtgtttaaaagacttttctaaccctcatttaatgttggtcttt-caatattaat 27442427  T
Q  216 gggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgatttttg 315  Q
    ||||||||| ||||||||||||||||||| |||| | |||||||||||| ||| |||||||| ||| ||| | ||||| ||||||||||||| |||||||    
T  27442426 gggtatatttaatacttcacaaatttttatgaggatatatttgtaaaaacattcaaaaaattgcaacaactaatgattgtcttggttttgataatttttg 27442327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 130 - 316
Target Start/End: Complemental strand, 28724103 - 28723918
Alignment:
Q  130 aagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaata 229  Q
    ||||||||||||||| ||| || || |||||||| |||||||||||| ||||||||| | ||||||||  |||||| ||||||||||| |||||| ||||    
T  28724103 aagaaaaagtcacaacttt-aatgtgcatttattatttaaaagacttttctaaccctcaattaatgtttatctttttaatattagtggttatatttaata 28724005  T
Q  230 cttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgatttttga 316  Q
    ||||||||||||||| |||||| ||| |||||||  ||| ||||||||||||   | | ||||| |||||||| |||||||||||||    
T  28724004 cttcacaaatttttatgagggtatatctgtaaaagcattcaaaaaattacaaccgctaatgattgtcttggttatgatgatttttga 28723918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 130 - 315
Target Start/End: Original strand, 13603078 - 13603265
Alignment:
Q  130 aagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaata 229  Q
    ||||||||||||||| ||| ||||| ||||||||||| ||||||||| ||||||| | | | || ||| ||||||| ||||||||||| |||||| ||||    
T  13603078 aagaaaaagtcacaacttt-aaggtgcatttattgttcaaaagacttttctaaccttcaataaaagtttgtctttttaatattagtggttatatttaata 13603176  T
Q  230 ---cttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgatttttg 315  Q
       ||||||||||||||| |||||| ||||||||||||   || |||||||||||| || | ||||| |||| ||||||||||||||||    
T  13603177 atacttcacaaatttttatgagggtatatttgtaaaaaacattcaaaaattacaattactaatgattgtcttcgttttgatgatttttg 13603265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 228 - 316
Target Start/End: Complemental strand, 45691643 - 45691555
Alignment:
Q  228 tacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgatttttga 316  Q
    ||||||||||||||||| |||||| |||||||||||||||| |||||||||||| ||| | | ||| ||||||||||||||||||||||    
T  45691643 tacttcacaaatttttatgagggtatatttgtaaaaatattcaaaaaattacaacaactaataattgtcttggttttgatgatttttga 45691555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 115 - 281
Target Start/End: Complemental strand, 36437354 - 36437188
Alignment:
Q  115 tttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattag 214  Q
    ||||||| |||||| ||||||| ||||||| |||||||| | | |||||| ||||||||||| | || |||| |||||||||  ||||||| ||||||||    
T  36437354 tttggtcctatttataagaaaatgtcacaacttttaagg-atagttattgcttaaaagacttttttatccctcatttaatgtctgtctttttaatattag 36437256  T
Q  215 tggg-tatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaa 281  Q
    |||| | |||| |||  |||||||  || ||  ||||| ||||||||||||| |||||||| ||||||    
T  36437255 tgggatgtatttaatgtttcacaacattctataagggtatatttgtaaaaatgtttaaaaagttacaa 36437188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 115 - 279
Target Start/End: Original strand, 42745537 - 42745700
Alignment:
Q  115 tttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattag 214  Q
    ||||||| |||||| ||||||| |||||||||||| | ||| | ||||||||||||| |||| | || |||| |||||| | | | ||||| ||||||||    
T  42745537 tttggtcctatttataagaaaatgtcacaatttttgaagtataattattgtttaaaatactt-tttatccctcatttaaggattgcctttttaatattag 42745635  T
Q  215 tgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattac 279  Q
    ||| | |||| |||  |||||||  || ||  ||||| ||||||||||||| |||||||| ||||    
T  42745636 tggatgtatttaatgtttcacaacattctataagggtatatttgtaaaaatgtttaaaaagttac 42745700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 39150304 - 39150187
Alignment:
Q  146 ttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaatacttcacaaatttttaa 245  Q
    |||||||||  | |||||| ||||||||||| |||| |||||||||||||||  | |||| ||||||| || || |||| ||| |||||| || |||||     
T  39150304 ttttaaggtgtagttattgcttaaaagacttttctaccccttatttaatgtttttgtttttaatattaatgagtgtatttaatgcttcac-aacttttat 39150206  T
Q  246 gagggtgtatttgtaaaaa 264  Q
    |||||| ||||||||||||    
T  39150205 gagggtatatttgtaaaaa 39150187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 280
Target Start/End: Complemental strand, 9851959 - 9851803
Alignment:
Q  123 tatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtata 222  Q
    |||||| ||||||| ||||||| |||||| ||  | |||||| ||||| ||| | | || |||| ||||||||||  |||||| ||||||||||||||||    
T  9851959 tatttataagaaaatgtcacaacttttaaagtgtagttattgcttaaatgacctttttatccct-atttaatgtttctcttttaaatattagtgggtata 9851861  T
Q  223 ttaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattaca 280  Q
    || |||  ||||||   |||||  | ||| |||||||||||||||| ||||| |||||    
T  9851860 tttaatgtttcacagtattttataaaggtatatttgtaaaaatattcaaaaagttaca 9851803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 284
Target Start/End: Complemental strand, 28165272 - 28165111
Alignment:
Q  123 tatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtata 222  Q
    |||||| || |||| ||||||| ||| |||||| | |||||| |||||||| || | || |||| ||| | | ||  |||||| |||||| || | | ||    
T  28165272 tatttataataaaatgtcacaactttaaaggtatagttattgcttaaaagatttttttacccctcattaagtctttatctttttaatattggtagatgta 28165173  T
Q  223 ttaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataa 284  Q
    || |||  ||||||| ||||||  ||||| |||||||||||||||| |||||||||||||||    
T  28165172 tttaatgtttcacaattttttataagggtatatttgtaaaaatattcaaaaaattacaataa 28165111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 254
Target Start/End: Original strand, 11435554 - 11435684
Alignment:
Q  123 tatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtata 222  Q
    |||||| ||||||| ||||||| || ||||||| | ||||||||||||| |||| | || |  |||||||||||| || |||| ||||||||||| | ||    
T  11435554 tatttataagaaaatgtcacaacttataaggtataattattgtttaaaa-acttttatatcatttatttaatgtttgtttttttaatattagtggatgta 11435652  T
Q  223 ttaaatacttcacaaatttttaagagggtgta 254  Q
    || ||| | |||||| |||||| |||| ||||    
T  11435653 tttaatgcatcacaattttttatgaggatgta 11435684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 17988423 - 17988358
Alignment:
Q  130 aagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatg 195  Q
    ||||||| ||||||| |||||||||  | |||||||||||||||||| | || |||||||||||||    
T  17988423 aagaaaatgtcacaacttttaaggtgtagttattgtttaaaagacttttttaccccttatttaatg 17988358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 6e-61; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 123 - 314
Target Start/End: Complemental strand, 25376991 - 25376800
Alignment:
Q  123 tatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtata 222  Q
    |||||| ||||||||||||||  |||||||||| | |||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| ||| |||||    
T  25376991 tatttacaagaaaaagtcacagattttaaggtataattattgtttaaaagacttttctaaccctcatttaatgttgatcttttcaatatttgtgagtata 25376892  T
Q  223 ttaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgattttt 314  Q
    || |||||||||||||||||||||||||| |||||||||||| ||| |||||||||||| ||| | ||||| ||||||||||||||||||||    
T  25376891 tttaatacttcacaaatttttaagagggtatatttgtaaaaacattcaaaaaattacaacaactaatgattgtcttggttttgatgattttt 25376800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 54863918 - 54864019
Alignment:
Q  116 ttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagt 215  Q
    |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| || ||||||||||| ||||||||||||||||    
T  54863918 ttggtcctatttataagaaaaagtcacaacttttaaggtacatttattgtttaaaaggcttttctaactctcatttaatgttgatcttttcaatattagt 54864017  T
Q  216 gg 217  Q
    ||    
T  54864018 gg 54864019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 139 - 280
Target Start/End: Complemental strand, 31707480 - 31707342
Alignment:
Q  139 tcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaatacttcacaaa 238  Q
    |||||| |||||||||  | |||||| ||| ||||||| |||| ||||||||||||||| ||||||| ||||||||||||| |||   || ||||| |||    
T  31707480 tcacaacttttaaggtgtagttattgcttagaagacttttctaccccttatttaatgtttgtctttttaatattagtgggtgtat---atgcttcataaa 31707384  T
Q  239 tttttaagagggtgtatttgtaaaaatatttaaaaaattaca 280  Q
    |||||| |||||| |||||||||||||||| ||||| |||||    
T  31707383 tttttatgagggtatatttgtaaaaatattcaaaaagttaca 31707342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 131 - 277
Target Start/End: Original strand, 18838761 - 18838906
Alignment:
Q  131 agaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaatac 230  Q
    |||||| |||| || |||||||||| | |||||||||||||||||| |||| |||| |||||||| |  |||||| ||||||||||||| |||| |||      
T  18838761 agaaaatgtcataacttttaaggtataattattgtttaaaagacttttcta-ccctcatttaatgattatctttttaatattagtgggtgtatttaatgt 18838859  T
Q  231 ttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaatt 277  Q
    ||||||| |||||| |||||| |||||||||||||| || |||||||    
T  18838860 ttcacaattttttatgagggtatatttgtaaaaataattcaaaaatt 18838906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 25382411 - 25382491
Alignment:
Q  183 cccttatttaatgttggtcttttcaatattagtgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaa 263  Q
    ||||||||||||||| ||||||| | |||||||| |||| || ||||||||||||||||| |  ||||| |||||||||||    
T  25382411 cccttatttaatgttagtctttttagtattagtgagtatttttaatacttcacaaattttcataagggtatatttgtaaaa 25382491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 34319546 - 34319680
Alignment:
Q  116 ttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagt 215  Q
    |||||| |||||| ||||||| |||||||||||||| || |  |||||||||||||  ||| ||| ||||||||||||||||  |||||| ||||||  |    
T  34319546 ttggtcctatttataagaaaatgtcacaatttttaaagtgcggttattgtttaaaaagcttttct-acccttatttaatgtttttctttttaatatttat 34319644  T
Q  216 gggtatattaaatacttcacaaatttttaagagggt 251  Q
    || |||||| |||  || |||| |||||| ||||||    
T  34319645 ggatatatttaatgttttacaattttttatgagggt 34319680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 268
Target Start/End: Complemental strand, 42312564 - 42312403
Alignment:
Q  115 tttggtcgtatttaaaagaaaa-agtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttc------- 206  Q
    ||||||| |||||| || |||| | |||||| |||||||||| | |||||| ||||||||||| |||| || || ||| ||||| |||||||            
T  42312564 tttggtcttatttataaaaaaataatcacaacttttaaggtatagttattgcttaaaagacttttctatcctttgttttatgtttgtctttttttttttt 42312465  T
Q  207 aatattagtgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatt 268  Q
    |||||||| || ||||||  || |||||||| |||||| |||||| ||||||||||||||||    
T  42312464 aatattagaggatatattttatgcttcacaattttttatgagggtatatttgtaaaaatatt 42312403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 21128097 - 21128195
Alignment:
Q  123 tatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtat 221  Q
    |||||| ||||||| |||| || |||||| ||| ||||||| |||||||||||| || |||||| |||| |||||  ||||||  ||||||||| ||||    
T  21128097 tatttataagaaaatgtcataacttttaatgtatatttattttttaaaagacttttccaaccctcattttatgtttatcttttttatattagtgagtat 21128195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 33721768 - 33721704
Alignment:
Q  117 tggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatcta 181  Q
    ||||| |||||| ||||||| |||||||||||||| ||  | |||||||||||||||||| ||||    
T  33721768 tggtcctatttataagaaaatgtcacaatttttaatgtgtagttattgtttaaaagacttttcta 33721704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 281
Target Start/End: Original strand, 30615193 - 30615275
Alignment:
Q  199 gtcttttcaatattagtgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaa 281  Q
    ||||||| ||||||||| | | |||| |||  |||| || ||||||  | |||||||||||||||||||||||||| ||||||    
T  30615193 gtctttttaatattagtagatgtatttaatgtttcataattttttataaaggtgtatttgtaaaaatatttaaaaagttacaa 30615275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 795 - 836
Target Start/End: Original strand, 39699856 - 39699897
Alignment:
Q  795 tattttttaggtctaatgcatctaaaatcctttaagtttttc 836  Q
    ||||| ||||||| ||||||||||||||| ||||||||||||    
T  39699856 tatttattaggtcaaatgcatctaaaatcatttaagtttttc 39699897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 280
Target Start/End: Complemental strand, 47231718 - 47231563
Alignment:
Q  123 tatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtata 222  Q
    |||||| ||||||| ||||  | ||||||| || ||||||||||||||||| || | || | |||||||||||||| |||||  |||||||    || ||    
T  47231718 tatttataagaaaatgtcaatacttttaagatatatttattgtttaaaagatttttttacctcttatttaatgttg-tctttataatattaacaagtgta 47231620  T
Q  223 ttaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattaca 280  Q
    || |||  ||||||| |||||| |||| | || ||||||||||||| ||||| |||||    
T  47231619 tttaatgattcacaactttttatgagg-tataattgtaaaaatattcaaaaagttaca 47231563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 2e-54; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 73 - 312
Target Start/End: Original strand, 19780181 - 19780421
Alignment:
Q  73 tacttcctccggttctatatataagaaaattttcnnnnnnnn-tttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaa 171  Q
    |||| |||||| ||||||||||||||||||||||         ||||||| ||| || ||||||||||  ||| ||||||| || |||||||||||||||    
T  19780181 tactccctccgattctatatataagaaaattttcaaaaaaaaatttggtcctatatataagaaaaagtttcaacttttaagatatatttattgtttaaaa 19780280  T
Q  172 gacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaa 271  Q
    ||||| ||||||||| ||||||||||  ||||||||| ||||||||||||||| |||||||||||||||| |||   ||| |||||||||||| ||| ||    
T  19780281 gacttttctaaccctcatttaatgtttctcttttcaaaattagtgggtatatttaatacttcacaaatttataatgcggtatatttgtaaaaacattaaa 19780380  T
Q  272 aaaattacaataaccagtgattatcttggttttgatgattt 312  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  19780381 aaaattacaataactaatgattatcttggttttgatgattt 19780421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 129 - 315
Target Start/End: Original strand, 6657886 - 6658070
Alignment:
Q  129 aaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaat 228  Q
    |||||||||||||||| ||| ||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||| |||||||||||||||||| |||    
T  6657886 aaagaaaaagtcacaacttt-aaggtacatttattgtttaaatgacttttctaaccctcatttaatgtttgtctttttaatattagtgggtatatttaat 6657984  T
Q  229 acttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgatttttg 315  Q
    |||||||||||||||| |||||| |||||||||| | | ||||||||||||||  || | ||||| ||  |||||||||||||||||    
T  6657985 acttcacaaatttttatgagggtatatttgtaaataca-ttaaaaaattacaaccactaatgattgtcaaggttttgatgatttttg 6658070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 128 - 315
Target Start/End: Original strand, 9425498 - 9425686
Alignment:
Q  128 aaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaa 227  Q
    |||| ||||| |||||| |||| ||||| |||||||||||||||||||| | ||| ||| ||||||||||  ||||||  ||| |||||  |||||| ||    
T  9425498 aaaaaaaaaaatcacaacttttgaggtatatttattgtttaaaagacttttttaatcctcatttaatgtttatctttttcataatagtgaatatatttaa 9425597  T
Q  228 tacttcacaaatttttaagagggtgtatttgtaaaaatatt-taaaaaattacaataaccagtgattatcttggttttgatgatttttg 315  Q
    ||||||||| | ||||| ||| || |||||||||||| |||  |||||||| ||| ||| | ||||| |||||||||||||||||||||    
T  9425598 tacttcacagaattttatgagagtatatttgtaaaaacattcaaaaaaattgcaacaactaatgattttcttggttttgatgatttttg 9425686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 160 - 280
Target Start/End: Complemental strand, 34837260 - 34837140
Alignment:
Q  160 tattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaatacttcacaaatttttaagagggtgtatttgt 259  Q
    ||||||||||||||||| | || ||||||||||||| | ||||||| ||||||| ||| | |||| ||| |||||||| |||||| |||||| |||||||    
T  34837260 tattgtttaaaagacttttttaccccttatttaatgcttgtctttttaatattaatggatgtattgaatgcttcacaattttttatgagggtatatttgt 34837161  T
Q  260 aaaaatatttaaaaaattaca 280  Q
    ||||||||| ||||| |||||    
T  34837160 aaaaatattcaaaaagttaca 34837140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 116 - 315
Target Start/End: Original strand, 180334 - 180533
Alignment:
Q  116 ttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagt 215  Q
    |||||| |||||| |||||||  |||||||||||||| |  | |||||| ||||||||||| | || ||||||||||||||| ||||||| |||||||||    
T  180334 ttggtcctatttataagaaaatatcacaatttttaagatgtagttattgcttaaaagacttttataccccttatttaatgtttgtctttttaatattagt 180433  T
Q  216 gggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgatttttg 315  Q
     | | |||| ||  ||||| || ||||||  ||||| |||||||||| ||||| ||||| ||||| |||  | ||| | | |||||||||||| ||||||    
T  180434 cgatgtatttaacgcttcaaaattttttataagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattggttttgatgttttttg 180533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 209 - 280
Target Start/End: Complemental strand, 12143780 - 12143709
Alignment:
Q  209 tattagtgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattaca 280  Q
    |||||||  ||||||| ||| |||||||| |||||| ||||||||||||||||||||||| ||||| |||||    
T  12143780 tattagttagtatatttaatgcttcacaattttttatgagggtgtatttgtaaaaatattcaaaaagttaca 12143709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 281
Target Start/End: Complemental strand, 606772 - 606606
Alignment:
Q  115 tttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattag 214  Q
    ||||||| |||||| ||||||| ||||||| |||||||||  | |||| | |||||| |||| |  | |||||||||||||   || |||| ||||||||    
T  606772 tttggtcctatttataagaaaatgtcacaacttttaaggtgtacttatagcttaaaatactttttaatcccttatttaatgactgtatttttaatattag 606673  T
Q  215 tgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaa 281  Q
    ||| | |||| |||  |||||||  || ||  ||||| ||||||||||||| |||||||| ||||||    
T  606672 tggatgtatttaatgtttcacaacattctataagggtatatttgtaaaaatgtttaaaaagttacaa 606606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 261
Target Start/End: Original strand, 7926799 - 7926944
Alignment:
Q  116 ttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagt 215  Q
    |||||| |||||| |||||||  |||||| |||||| ||  | ||||| |||| || |||||| || ||||||||||||  | ||||||| |||||||      
T  7926799 ttggtcatatttataagaaaatatcacaacttttaaagtgtaattattttttagaaaacttatataccccttatttaatagttgtctttttaatattaaa 7926898  T
Q  216 gggtatattaaatacttcacaaatttttaagagggtgtatttgtaa 261  Q
    | || |||| ||| |||||||| |||||| |||||| |||||||||    
T  7926899 gagtgtatttaatgcttcacaattttttatgagggtatatttgtaa 7926944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 2e-54; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 134 - 314
Target Start/End: Complemental strand, 14200503 - 14200323
Alignment:
Q  134 aaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaatacttc 233  Q
    ||||||||||| ||||||| |||||||||| |||||||||||| | ||||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  14200503 aaaagtcacaacttttaagatacatttattatttaaaagacttttttaaccctcatttaatgttgatcttttcaatattagtgagtatatttaatacttc 14200404  T
Q  234 acaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgattttt 314  Q
    ||||||||||| |||||| |||||||||||| ||| |||||||||  ||||| | ||||| ||||||||||||||||||||    
T  14200403 acaaatttttatgagggtatatttgtaaaaacattcaaaaaattaggataactaatgattgtcttggttttgatgattttt 14200323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 123 - 314
Target Start/End: Original strand, 7011096 - 7011284
Alignment:
Q  123 tatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtata 222  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||     |||||||||||||||||||||||    
T  7011096 tatttataagaaaaagtcacaatttttaagatacatttattgtttaaaagacttttctaaccctcatttaat----atcttttcaatattagtgggtata 7011191  T
Q  223 ttaaatacttcacaaatttttaagagggtgtatttgtaaaaatatt-taaaaaattacaataaccagtgattatcttggttttgatgattttt 314  Q
    || ||||||||||||||||||| ||| || |||||||||||| |||  |||||||| ||| ||| | ||||| ||||| ||||||||||||||    
T  7011192 tttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaaattgcaacaactactgattgtcttgattttgatgattttt 7011284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 146 - 315
Target Start/End: Original strand, 32872365 - 32872534
Alignment:
Q  146 ttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaatacttcacaaatttttaa 245  Q
    ||||||| ||||||||||||||||||||||| || |||||| |||||||||| ||| ||| |||||||||||||||||| |||||||||||| ||||||     
T  32872365 ttttaagttacatttattgtttaaaagacttttccaaccctaatttaatgtttgtccttttaatattagtgggtatatttaatacttcacaattttttat 32872464  T
Q  246 gagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgatttttg 315  Q
    |||||| |||||||||||| ||| ||||||||||||  || | ||||| |||||||||||||||| ||||    
T  32872465 gagggtatatttgtaaaaacattcaaaaaattacaaccactaatgattgtcttggttttgatgatctttg 32872534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 130 - 275
Target Start/End: Original strand, 31404954 - 31405098
Alignment:
Q  130 aagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaata 229  Q
    |||||||||||| | ||||||||||||||||||| |||||||||||| ||||||||| ||||||| || ||||||| ||||||||||  |||||| ||||    
T  31404954 aagaaaaagtcata-tttttaaggtacatttattttttaaaagacttttctaaccctcatttaatatttgtctttttaatattagtgcatatatttaata 31405052  T
Q  230 cttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaa 275  Q
    ||||| |||||| || |||| | |||||||||||||||| ||||||    
T  31405053 cttcataaatttctatgaggatatatttgtaaaaatattcaaaaaa 31405098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 115 - 313
Target Start/End: Original strand, 40503868 - 40504066
Alignment:
Q  115 tttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattag 214  Q
    |||||||  ||||| ||||||| ||||||| |||||||||  | ||||||||||||| |||| | || |||||||||| |||| ||||||| ||||||||    
T  40503868 tttggtcccatttataagaaaatgtcacaacttttaaggtgtaattattgtttaaaaaacttttataccccttatttattgtttgtctttttaatattag 40503967  T
Q  215 tgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgatttt 313  Q
    | |||  ||| ||| |||||||| |||||| |||||| ||| |||||||||||| |||| |||||| |||  | ||||||  ||| |||||||| ||||    
T  40503968 taggtgcatttaatgcttcacaactttttatgagggtatatctgtaaaaatattcaaaagattacactaattaatgattacattgattttgatgttttt 40504066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 123 - 280
Target Start/End: Original strand, 38496474 - 38496631
Alignment:
Q  123 tatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtata 222  Q
    |||||| ||||||| |||| ||||||||||||| | |||||||||||||||| | |||| ||||||||||| ||| || |||| ||||||||| ||| ||    
T  38496474 tatttataagaaaatgtcagaatttttaaggtatagttattgtttaaaagacctttctaccccttatttaacgtttgtatttttaatattagtaggtgta 38496573  T
Q  223 ttaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattaca 280  Q
    || |||  ||| || |||||||  ||||| |||||||||||||||| ||||| |||||    
T  38496574 tttaatgtttcgcacatttttatcagggtatatttgtaaaaatattcaaaaagttaca 38496631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 115 - 315
Target Start/End: Original strand, 38214106 - 38214306
Alignment:
Q  115 tttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattag 214  Q
    |||||||  ||||| |||||||| |||||| |||||||||  |||||||||||||||||||| | || |||| |||||||  |  |||||| ||||||||    
T  38214106 tttggtccaatttataagaaaaattcacaacttttaaggtgtatttattgtttaaaagacttttatatccctcatttaatacttctctttttaatattag 38214205  T
Q  215 tgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgattttt 314  Q
    |  || |||| |||  ||||||| |||||| |||| | |||||||||||||||| ||||| || |  ||| || ||||| | |||||||||||| |||||    
T  38214206 tatgtgtatttaatgtttcacaattttttatgaggatatatttgtaaaaatattcaaaaagtttctttaatcaatgattgtattggttttgatgtttttt 38214305  T
Q  315 g 315  Q
    |    
T  38214306 g 38214306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 116 - 308
Target Start/End: Original strand, 16781256 - 16781447
Alignment:
Q  116 ttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagt 215  Q
    |||||| |||||| ||||||||||||||| ||| |||||| | ||| |||||||||||||| ||||  ||||| |||||||| ||||||  |||||||||    
T  16781256 ttggtcatatttataagaaaaagtcacaacttt-aaggtataattaatgtttaaaagacttttctacgccttagttaatgtttgtctttgtaatattagt 16781354  T
Q  216 gggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatg 308  Q
     ||| |||| |||  ||||| | |||| | |||||| |||||||| || |||| ||||||||| | |||  | ||||||  ||||||||||||    
T  16781355 aggtgtatttaatgtttcaccatttttaatgagggtatatttgtataattattcaaaaaattagactaattaatgattacattggttttgatg 16781447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 183 - 315
Target Start/End: Complemental strand, 45724004 - 45723872
Alignment:
Q  183 cccttatttaatgttggtcttttcaatattagtgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaat 282  Q
    |||| ||||||| |||||||||||||||||||| |||||||| ||||||| | ||||||||| || | | ||||||||| || ||| ||||||||| |      
T  45724004 ccctcatttaatattggtcttttcaatattagtaggtatatttaatactttataaatttttatgaagatatatttgtaacaacattcaaaaaattagagc 45723905  T
Q  283 aaccagtgattatcttggttttgatgatttttg 315  Q
    ||| | ||||| | |||||||||||||||||||    
T  45723904 aactaatgattgttttggttttgatgatttttg 45723872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 221 - 315
Target Start/End: Original strand, 34309311 - 34309405
Alignment:
Q  221 tattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgatttttg 315  Q
    |||| ||||||||||||||||||| |||||| |||||||||||  ||| ||||||||||||| || | ||||| ||||| |||||||||||||||    
T  34309311 tatttaatacttcacaaatttttatgagggtatatttgtaaaagcattcaaaaaattacaatcactaatgattgtcttgattttgatgatttttg 34309405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 34262721 - 34262809
Alignment:
Q  133 aaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtata 222  Q
    ||||||| |||||||| ||||| ||||||||||||||||||||| ||||||||| | |||||||| ||||||| ||||||||||| ||||    
T  34262721 aaaaagtaacaatttt-aaggttcatttattgtttaaaagacttttctaaccctcaattaatgtttgtctttttaatattagtggttata 34262809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 123 - 278
Target Start/End: Original strand, 40442719 - 40442874
Alignment:
Q  123 tatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtata 222  Q
    |||||| ||||||| ||||||| |||||||||  | ||||||||||||| |||| | || |||||||||| ||||  |||||| ||||||||| |||  |    
T  40442719 tatttataagaaaatgtcacaacttttaaggtgtaattattgtttaaaaaacttttataccccttatttattgtttatctttttaatattagtaggtgca 40442818  T
Q  223 ttaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaatta 278  Q
    || ||| |||||||| ||||||  ||||| ||| | |||||||||| |||| ||||    
T  40442819 tttaatgcttcacaactttttataagggtatatctataaaaatattcaaaagatta 40442874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 124 - 274
Target Start/End: Complemental strand, 39063740 - 39063590
Alignment:
Q  124 atttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatat 223  Q
    ||||| |||||||| |||||| |||||||||  |||||||||||||||||||| | ||   || |||||||  |  |||||| |||||||||| || |||    
T  39063740 atttataagaaaaattcacaacttttaaggtgtatttattgtttaaaagacttttatattgctcatttaatacttctctttttaatattagtgtgtgtat 39063641  T
Q  224 taaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaa 274  Q
    | |||  ||||||| |||||| |||| | |||||||||||||||| |||||    
T  39063640 ttaatgtttcacaattttttatgaggttatatttgtaaaaatattcaaaaa 39063590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 130 - 274
Target Start/End: Original strand, 3268806 - 3268950
Alignment:
Q  130 aagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaata 229  Q
    |||||||  |||||| |||||||||  | ||||||  |||||||||| |||| |||||||||||||||  | |||| ||||||| | ||| |||| ||      
T  3268806 aagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaataggtgtatttaagg 3268905  T
Q  230 cttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaa 274  Q
    |||||||| ||||||  ||||| |||||||||||||||| |||||    
T  3268906 cttcacaactttttataagggtatatttgtaaaaatattcaaaaa 3268950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 130 - 274
Target Start/End: Original strand, 3269365 - 3269509
Alignment:
Q  130 aagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaata 229  Q
    |||||||  |||||| |||||||||  | ||||||  |||||||||| |||| |||||||||||||||  | |||| ||||||| | ||| |||| ||      
T  3269365 aagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaataggtgtatttaagg 3269464  T
Q  230 cttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaa 274  Q
    |||||||| ||||||  ||||| |||||||||||||||| |||||    
T  3269465 cttcacaactttttataagggtatatttgtaaaaatattcaaaaa 3269509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 130 - 274
Target Start/End: Original strand, 3269924 - 3270068
Alignment:
Q  130 aagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaata 229  Q
    |||||||  |||||| |||||||||  | ||||||  |||||||||| |||| |||||||||||||||  | |||| ||||||| | ||| |||| ||      
T  3269924 aagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaataggtgtatttaagg 3270023  T
Q  230 cttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaa 274  Q
    |||||||| ||||||  ||||| |||||||||||||||| |||||    
T  3270024 cttcacaactttttataagggtatatttgtaaaaatattcaaaaa 3270068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 200 - 316
Target Start/End: Original strand, 21794914 - 21795031
Alignment:
Q  200 tcttttcaatattagtgggtatattaaatacttcacaaatttttaa-gagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatctt 298  Q
    |||||| |||||||||| || |||| |||  ||||||| ||||| | |||||| |||||||||||||||| ||||| || |  ||| || ||||||| ||    
T  21794914 tctttttaatattagtgtgtgtatttaatgtttcacaatttttttatgagggtatatttgtaaaaatattcaaaaagtttctttaatcaatgattatatt 21795013  T
Q  299 ggttttgatgatttttga 316  Q
    |||||||||| |||||||    
T  21795014 ggttttgatgttttttga 21795031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 275
Target Start/End: Complemental strand, 44173776 - 44173634
Alignment:
Q  134 aaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaaccctt-atttaatgttggtcttttcaatattagtgggtatattaaatactt 232  Q
    |||||||| || ||||||||||| |||||||  ||||| |||| | |||   || ||||||||||  |||||| ||||||||||  |||| | |||||||    
T  44173776 aaaagtcataacttttaaggtacgtttattgcgtaaaacacttttttaaatttttatttaatgtttatctttttaatattagtgaatatagttaatactt 44173677  T
Q  233 cacaaatttttaagagggtgtatttgtaaaaatatttaaaaaa 275  Q
     ||||| ||||  |||||| ||||| |||||| ||||||||||    
T  44173676 tacaaaattttccgagggtatatttctaaaaacatttaaaaaa 44173634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 215
Target Start/End: Complemental strand, 4015934 - 4015843
Alignment:
Q  123 tatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagt 215  Q
    |||||| ||||||||||||||| | | ||| || | ||| |||||||||||||| |||| |||||| |||||||| ||||||  |||||||||    
T  4015934 tatttataagaaaaagtcacaactct-aagatatagttaatgtttaaaagacttttctaccccttagttaatgtttgtctttgtaatattagt 4015843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 274
Target Start/End: Original strand, 19285873 - 19286032
Alignment:
Q  115 tttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattag 214  Q
    ||||||| |||||| ||| ||  ||||||| |||||||||  | ||||||  |||||||||| | || || | ||||||| || ||||||||||||||||    
T  19285873 tttggtcctatttataagtaattgtcacaagttttaaggtgtagttattgcataaaagacttttatatccttcatttaatatttgtcttttcaatattag 19285972  T
Q  215 tgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaa 274  Q
    ||  | |||| |||  ||||||| ||| ||   || | ||||||||||| ||||||||||    
T  19285973 tgaatgtatttaatggttcacaactttctatagggatatatttgtaaaattatttaaaaa 19286032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 27075062 - 27075023
Alignment:
Q  23 aactaaatacatcatttattcaataaacataaaaagtgaa 62  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  27075062 aactaaatacatcatttattcaattaacctaaaaagtgaa 27075023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 3711984 - 3711912
Alignment:
Q  123 tatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgt 196  Q
    |||||| ||||||| ||||||| |||||||| | | |||||||||||||||||| | || | ||||||||||||    
T  3711984 tatttataagaaaatgtcacaacttttaagg-atagttattgtttaaaagacttttttatcgcttatttaatgt 3711912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 8e-48; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 115 - 312
Target Start/End: Original strand, 14568350 - 14568547
Alignment:
Q  115 tttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattag 214  Q
    ||||||| ||| || ||||||||||  ||| ||||||| || |||||||||||||||||||| ||||||||| ||||||||||  ||||||||| |||||    
T  14568350 tttggtcctatatataagaaaaagtttcaacttttaagatatatttattgtttaaaagacttttctaaccctcatttaatgtttctcttttcaaaattag 14568449  T
Q  215 tgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgattt 312  Q
    |||||||||| ||||||||| |||||| ||| | ||| |||||||||||| ||| |||| ||||||||||| | ||||| ||||||||||||||||||    
T  14568450 tgggtatattgaatacttcaaaaatttataatacggtatatttgtaaaaacattcaaaatattacaataactaatgattgtcttggttttgatgattt 14568547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 123 - 314
Target Start/End: Complemental strand, 10599897 - 10599706
Alignment:
Q  123 tatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtata 222  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||| ||| |||| ||||||| | ||||||||||  |||||| |||| ||||| |||||    
T  10599897 tatttataagaaaaagtcacaacttttgaggtacatttattgtttgaaaaacttttctaaccttcatttaatgtttatctttttaataatagtgtgtata 10599798  T
Q  223 ttaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgattttt 314  Q
    || ||||||||||||| ||||| |||||| |||||||||||  ||| |||| ||| ||| ||| | | | | ||||||||||||||||||||    
T  10599797 tttaatacttcacaaaattttatgagggtatatttgtaaaatcattcaaaacattgcaacaactaatcaatgtcttggttttgatgattttt 10599706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 72 - 280
Target Start/End: Original strand, 41508049 - 41508258
Alignment:
Q  72 atacttcctccggttctatatataagaaaattttcnnnnnnnn-tttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaa 170  Q
    ||||||||||||| ||||||||||| |||||||||         ||||||| ||  || |||||||  ||||||||||||||||  | |||||| |||||    
T  41508049 atacttcctccggctctatatataataaaattttcaaaaaaaaatttggtcctaaatataagaaaatatcacaatttttaaggtgtagttattgcttaaa 41508148  T
Q  171 agacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatattta 270  Q
    |||||| | || ||||||||||||||| ||||||| ||||||||||||| |||| ||| |||||||| |||||| |||||| |||||||||||| ||| |    
T  41508149 agacttttttaccccttatttaatgtttgtctttttaatattagtgggtgtatttaatgcttcacaattttttatgagggtatatttgtaaaaacattca 41508248  T
Q  271 aaaaattaca 280  Q
    |||| |||||    
T  41508249 aaaagttaca 41508258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 123 - 217
Target Start/End: Original strand, 42935455 - 42935549
Alignment:
Q  123 tatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgg 217  Q
    |||||| ||||||||||||||| |||| || |||||||||||||||||||| || |||||  || |||||||||||||||||||| |||||||||    
T  42935455 tatttataagaaaaagtcacaacttttgagatacatttattgtttaaaagatttttctaattctcatttaatgttggtcttttcagtattagtgg 42935549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 17757558 - 17757476
Alignment:
Q  123 tatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtctttt 205  Q
    |||||| ||||||||| ||||| ||||||||||||||||||| ||||||||| | | ||||||| |||||||| |||||||||    
T  17757558 tatttataagaaaaagacacaacttttaaggtacatttattgcttaaaagacatttttaaccctaatttaatggtggtctttt 17757476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 218 - 314
Target Start/End: Original strand, 10409789 - 10409887
Alignment:
Q  218 gtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatt--taaaaaattacaataaccagtgattatcttggttttgatgattttt 314  Q
    ||||||| |||||||||||||||||||||||||| ||||| |||||| |||   |||||||| ||| ||| | ||||| | ||||||||||||||||||    
T  10409789 gtatatttaatacttcacaaatttttaagagggtatatttataaaaacattcaaaaaaaattgcaacaactaatgattgttttggttttgatgattttt 10409887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 315
Target Start/End: Complemental strand, 15033413 - 15033262
Alignment:
Q  160 tattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaatacttcacaaatttttaagagggtgtatttgt 259  Q
    ||||||||||||||||| | || | ||  |||||| || |||||||||||||||||| ||||||| |||| |||| |||||||||  || || |||||||    
T  15033413 tattgtttaaaagactttt-tagctctcgtttaatatttgtcttttcaatattagtgagtatattcaataattcataaatttttattagagtatatttgt 15033315  T
Q  260 aaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgatttttg 315  Q
    ||||  ||| |||||  ||||||    ||||||| ||||| |||||||||||||||    
T  15033314 aaaatcattcaaaaaggtacaat---tagtgattgtcttgattttgatgatttttg 15033262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 280
Target Start/End: Original strand, 20949074 - 20949230
Alignment:
Q  123 tatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtata 222  Q
    |||||| ||||||| |||| || |||||||||  | |||||| ||||| || || | || |||| |||||||||   |||||| |||||||||  || ||    
T  20949074 tatttataagaaaatgtcataacttttaaggtgtagttattgcttaaatgatttttttatccct-atttaatgtctctcttttgaatattagtatgtgta 20949172  T
Q  223 ttaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattaca 280  Q
    || |||  ||||||| |||||| |||||| |||||||||||||||||||||| |||||    
T  20949173 tttaatgtttcacaattttttatgagggtatatttgtaaaaatatttaaaaagttaca 20949230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 267
Target Start/End: Original strand, 7307436 - 7307586
Alignment:
Q  118 ggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatc-taacccttatttaatgttggtcttttcaatattagtg 216  Q
    |||| |||||| ||||||| ||||||| |||||| |   | ||||||||||||||| || |  |  ||||||||||| ||| || |||| ||||||||||    
T  7307436 ggtcatatttataagaaaatgtcacaacttttaaagagtagttattgtttaaaagattttttatgccccttatttaaggtttgtttttttaatattagtg 7307535  T
Q  217 ggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatat 267  Q
    | | |||| ||| |||||||| |||||| ||| || |||||||||||||||    
T  7307536 gatgtatttaatgcttcacaattttttatgagagtatatttgtaaaaatat 7307586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 17757459 - 17757376
Alignment:
Q  197 tggtcttttcaa-tattagtgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattac 279  Q
    |||||||||||| |||||||||||||||| |||| ||||||| |||||| || | | |||||||||||| ||| ||||| ||||    
T  17757459 tggtcttttcaaatattagtgggtatattcaataattcacaattttttatgaagatatatttgtaaaaacattaaaaaagttac 17757376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 307
Target Start/End: Complemental strand, 14658855 - 14658737
Alignment:
Q  189 tttaatgttggtcttttcaatattagtgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccag 288  Q
    |||||||||  |||||| |||| ||||||  ||||| ||||||||| |  |||||| |||||| |||||||||||| ||||||||| ||  |||||| |     
T  14658855 tttaatgtttatctttttaatactagtggaaatatttaatacttcatatgtttttatgagggtatatttgtaaaaacatttaaaaagttgtaataactaa 14658756  T
Q  289 tgattatcttggttttgat 307  Q
    ||||| | | |||||||||    
T  14658755 tgattttataggttttgat 14658737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 256
Target Start/End: Original strand, 46341505 - 46341631
Alignment:
Q  130 aagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaata 229  Q
    |||||||  |||||| |||||||||  | |||||| ||||||||||| |||| | |||||||| ||||  | ||||  ||| |||||||| |||| |||     
T  46341505 aagaaaatatcacaacttttaaggtgtagttattgcttaaaagacttctctaccacttatttattgtttttgtttttgataatagtgggtgtatttaatg 46341604  T
Q  230 cttcacaaatttttaagagggtgtatt 256  Q
    |||||||| |||||| |||||| ||||    
T  46341605 cttcacaactttttacgagggtatatt 46341631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 13777705 - 13777790
Alignment:
Q  188 atttaatgttggtcttttcaa-tattagtgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaa 272  Q
    ||||||| || ||||||| || |||||||  ||||||| ||||||||||||||||||| ||  || ||||| |||||| |||||||    
T  13777705 atttaatatttgtctttttaagtattagtaagtatatttaatacttcacaaatttttatgaacgtatatttataaaaacatttaaa 13777790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 22527193 - 22527234
Alignment:
Q  134 aaaagtcacaatttttaaggtacatttattgtttaaaagact 175  Q
    |||||||||||||||||||||| ||| ||| |||||||||||    
T  22527193 aaaagtcacaatttttaaggtatattcattctttaaaagact 22527234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 28923078 - 28923049
Alignment:
Q  21 taaactaaatacatcatttattcaataaac 50  Q
    ||||||||||||||||||||||||||||||    
T  28923078 taaactaaatacatcatttattcaataaac 28923049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 1e-46; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 147 - 314
Target Start/End: Complemental strand, 30041429 - 30041262
Alignment:
Q  147 tttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaatacttcacaaatttttaag 246  Q
    ||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||||| ||||||||||| |||||| |||||||||||||| |||| |    
T  30041429 tttaaggtatatttattgtttaaaagacttttctaacccttaattaatgtttgtctttttaatattagtggttatatttaatacttcacaaatctttatg 30041330  T
Q  247 agggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgattttt 314  Q
    ||||| ||||| |||||| ||| ||||||||||||  || | ||||| ||||||||||||||||||||    
T  30041329 agggtatatttataaaaacattcaaaaaattacaaccactaatgattgtcttggttttgatgattttt 30041262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 155 - 314
Target Start/End: Original strand, 30577821 - 30577979
Alignment:
Q  155 acatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaatacttcacaaatttttaagagggtgta 254  Q
    ||||||||| |||||||||| | |||| |||| ||||||||||||||||||||| |||||| | |||||| ||||||||||  ||||||| || ||| ||    
T  30577821 acatttattatttaaaagacgtttctatccctcatttaatgttggtcttttcaacattagtagatatatttaatacttcactcatttttatgatggtata 30577920  T
Q  255 tttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgattttt 314  Q
    |||||||||| |||||||||||||||| ||| | | ||||||||| ||||||||| ||||    
T  30577921 tttgtaaaaacatttaaaaaattacaacaactaat-attatcttgattttgatgaatttt 30577979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 183 - 315
Target Start/End: Complemental strand, 43105234 - 43105101
Alignment:
Q  183 cccttatttaatgttggtcttttcaatattagtgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatt-taaaaaattacaa 281  Q
    |||| ||||||||||| |||||||||||||||||||||||||  |||||||||||||||||| |||||| |||||||||||| |||  ||||||||||||    
T  43105234 ccctcatttaatgttgatcttttcaatattagtgggtatatttgatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaaattacaa 43105135  T
Q  282 taaccagtgattatcttggttttgatgatttttg 315  Q
     ||  | ||||| ||||  |||||||||||||||    
T  43105134 caattaatgattgtcttaattttgatgatttttg 43105101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 168 - 314
Target Start/End: Original strand, 35104715 - 35104860
Alignment:
Q  168 aaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatat 267  Q
    |||||| || ||||||| | ||||||||||||||||||||||||||||| ||||||| ||||| ||| ||| |||||||||||| |||||||| ||| ||    
T  35104715 aaaagatttttctaaccttcatttaatgttggtcttttcaatattagtgtgtatatttaatacctcaaaaaattttaagagggtatatttgtacaaacat 35104814  T
Q  268 ttaaaaaattacaataaccagtgattatcttggttttgatgattttt 314  Q
    | |||||||| ||| ||| | | ||| |||||| |||||||||||||    
T  35104815 tcaaaaaattgcaacaactaataattgtcttgg-tttgatgattttt 35104860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 123 - 314
Target Start/End: Original strand, 22923629 - 22923823
Alignment:
Q  123 tatttaaaagaaaaagtcacaatttttaaggtac---atttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggt 219  Q
    |||||| |||||||||| |||| || |||| |||   |||||||| ||||| ||| | ||||| | | |||||||  || |||||| ||||||||| |||    
T  22923629 tatttataagaaaaagttacaacttgtaagatactatatttattggttaaaggacatttctaatcataatttaattgtgatctttttaatattagtaggt 22923728  T
Q  220 atattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgattttt 314  Q
    ||||| ||||| ||||||||||||| || ||| ||||||||||||||| |||||| |||||| ||  | ||| ||||||| ||||||||||||||    
T  22923729 atatttaatacatcacaaatttttatgaaggtatatttgtaaaaatatataaaaagttacaacaattaatgactatcttgattttgatgattttt 22923823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 199 - 316
Target Start/End: Original strand, 49983785 - 49983904
Alignment:
Q  199 gtcttttcaatattagtgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaata--tttaaaaaattacaataaccagtgattatc 296  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||| |   || |||||||||||| || | ||||| ||    
T  49983785 gtctttttaatattagtgggtatatttaatacttcacaaatttttatgagggtatatttgtaaaaaaaacattcaaaaattacaatcactaatgattgtc 49983884  T
Q  297 ttggttttgatgatttttga 316  Q
    |||||||| |||||||||||    
T  49983885 ttggttttaatgatttttga 49983904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 49983564 - 49983646
Alignment:
Q  130 aagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatatt 212  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||| |||||||||| ||||||| ||||||    
T  49983564 aagaaaaagtcacaacttttaagatacatttattgtttaaaagacttttctaaccctcatttaatgtttgtctttttaatatt 49983646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 72 - 224
Target Start/End: Complemental strand, 32211988 - 32211835
Alignment:
Q  72 atacttcctccggttctatatataagaaaattttcnnnnnnnnt-ttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaa 170  Q
    ||||| |||||||| ||||||||||||||||||||        | |||||| |||||| |||||||  |||||| |||||||||  | ||||||||||||    
T  32211988 atactccctccggtcctatatataagaaaattttcaaaaaaattgttggtcttatttataagaaaatttcacaacttttaaggtgtagttattgtttaaa 32211889  T
Q  171 agacttatctaacccttatttaatgttggtcttttcaatattagtgggtatatt 224  Q
    |||||| |||| || |||||||||||| ||||||| ||||||||||||| ||||    
T  32211888 agacttttctacccgttatttaatgtttgtctttttaatattagtgggtgtatt 32211835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 115 - 315
Target Start/End: Original strand, 45261357 - 45261554
Alignment:
Q  115 tttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattag 214  Q
    ||||||| |||||| ||||||| ||||||| ||||||| |  | |||||| ||||| ||||| |||| |||| ||||||||||  |||||| ||||||||    
T  45261357 tttggtcctatttataagaaaatgtcacaacttttaagctgtagttattgcttaaatgacttttctatccct-atttaatgtttctcttttaaatattag 45261455  T
Q  215 tgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgattttt 314  Q
    ||||| |||| |||  ||||||| |||||  |||||| ||||||||||||| || ||||| ||||| ||| || ||| |   |||||||||||| |||||    
T  45261456 tgggtgtatttaatgtttcacaatttttt--gagggtatatttgtaaaaatgttcaaaaagttacattaatcaatgaatgcattggttttgatgtttttt 45261553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 117 - 280
Target Start/End: Complemental strand, 17003729 - 17003567
Alignment:
Q  117 tggtcgtatttaaaagaaaaa-gtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagt 215  Q
    ||||| |||||| || ||||| ||||||| |||||||||  | |||||| ||||| ||||| | || |||| ||||||||||  |||||| |||||||||    
T  17003729 tggtcctatttataaaaaaaatgtcacaacttttaaggtgtagttattgcttaaatgacttttttatccct-atttaatgtttctcttttaaatattagt 17003631  T
Q  216 gggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattaca 280  Q
    |||| | || |||  ||||||| |||||| |||||| |||||||||||||||| ||||| |||||    
T  17003630 gggtgtgtttaatgtttcacaa-tttttatgagggtatatttgtaaaaatattcaaaaagttaca 17003567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 43106004 - 43105935
Alignment:
Q  123 tatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaa 193  Q
    |||||| ||||||||||||||| |||||||||  |||||||||||||||||||| ||||||||| ||||||    
T  43106004 tatttataagaaaaagtcacaacttttaaggtt-atttattgtttaaaagacttttctaaccctcatttaa 43105935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 237
Target Start/End: Complemental strand, 25295198 - 25295085
Alignment:
Q  124 atttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatat 223  Q
    ||||| ||||||| || |||| |||||||||  | |||||||||||||||||| | || |||| |||||||| |  |||||| ||||||||||||| |||    
T  25295198 atttataagaaaatgttacaacttttaaggtgtaattattgtttaaaagacttttttatccctcatttaatgcttctctttttaatattagtgggtttat 25295099  T
Q  224 taaatacttcacaa 237  Q
    |||||  |||||||    
T  25295098 taaatgtttcacaa 25295085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 314
Target Start/End: Complemental strand, 40345070 - 40344888
Alignment:
Q  130 aagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaata 229  Q
    ||||||| ||||||| |||||||||  | | |||| |||| |||||| | || |||| ||||||| || ||||||| |||||||||| |||| |  |||     
T  40345070 aagaaaatgtcacaacttttaaggtgtagtcattgcttaagagacttttatacccctcatttaatatttgtctttttaatattagtgagtattt--aatg 40344973  T
Q  230 cttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgattttt 314  Q
     ||||||| ||||||  ||||| |||||||||||||||| ||||| || |||||| || ||| |   |||||||||||| |||||    
T  40344972 gttcacaattttttataagggtatatttgtaaaaatattcaaaaagttgcaataatcaatgactgcattggttttgatgtttttt 40344888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 274
Target Start/End: Original strand, 41559995 - 41560133
Alignment:
Q  130 aagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaata 229  Q
    |||||||| ||| |||||||||| |||||||||  |||||||||||| | |||| || |||||||||| ||||||  |||||||||| ||       |||    
T  41559995 aagaaaaaatcataatttttaagatacatttatgatttaaaagacttttttaactctcatttaatgtttgtctttctaatattagtgagt------tata 41560088  T
Q  230 cttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaa 274  Q
    ||||||||||||||| || ||| ||||| |||||| ||| |||||    
T  41560089 cttcacaaatttttatgaaggtatatttataaaaacattcaaaaa 41560133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 281
Target Start/End: Complemental strand, 46918617 - 46918452
Alignment:
Q  115 tttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattag 214  Q
    ||||||| |||||| ||||||| |||||||||||||||| | | |||||| ||||||||||| | || || | |||||||||  ||||||| |||||||     
T  46918617 tttggtcctatttataagaaaatgtcacaatttttaagg-atagttattgcttaaaagacttttttatccttcatttaatgtctgtctttttaatattaa 46918519  T
Q  215 tgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaa 281  Q
    ||  | |||| |||  |||| ||  || ||  ||||| ||||||||||||| |||||||| ||||||    
T  46918518 tgaatgtatttaatgtttcaaaatattctataagggtatatttgtaaaaatgtttaaaaatttacaa 46918452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 219 - 316
Target Start/End: Complemental strand, 42279287 - 42279190
Alignment:
Q  219 tatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgatttttga 316  Q
    |||||| |||| |||| ||||||||| |||||| |||||||||||||||| ||||| |||| | ||  | |||  |||||| ||||||||||||||||    
T  42279287 tatatttaatatttcataaatttttatgagggtatatttgtaaaaatattaaaaaagttaccacaattaatgacgatcttgattttgatgatttttga 42279190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 282
Target Start/End: Original strand, 49787770 - 49787906
Alignment:
Q  148 ttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaatacttcacaaatttttaaga 247  Q
    ||||| || ||||||||||||||| |||| | |||||||  ||||||||| ||| ||| || |||| || ||||||| |||| || ||||||||  | ||    
T  49787770 ttaagatatatttattgtttaaaatacttttataaccctcgtttaatgtttgtccttttaaaattaatgagtatatttaatattttacaaatttcaatga 49787869  T
Q  248 gggtgtatttgt--aaaaatatttaaaaaattacaat 282  Q
    ||||||||||||  ||| ||||| | |||||||||||    
T  49787870 gggtgtatttgtcaaaagatattcataaaattacaat 49787906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 274
Target Start/End: Complemental strand, 43320278 - 43320133
Alignment:
Q  123 tatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtata 222  Q
    |||||| ||||||| ||||||| |||||||||    |||||||||||||||||| |||| ||| |||| |||||| ||||||      ||||||  | ||    
T  43320278 tatttataagaaaatgtcacaacttttaaggtgtggttattgtttaaaagacttttctagcccctattcaatgtttgtcttt------ttagtgaatgta 43320185  T
Q  223 ttaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaa 274  Q
    || ||| |||| | | ||||||  |||||||||||||||||||||| |||||    
T  43320184 tttaatgcttcgcgattttttataagggtgtatttgtaaaaatattcaaaaa 43320133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 277
Target Start/End: Complemental strand, 52596715 - 52596619
Alignment:
Q  182 acccttatttaatgttggtcttttcaatattagtgggtatattaaatacttcacaa-atttttaagagggtgtatttgtaaaaatatttaaaaaatt 277  Q
    |||||||||||||||| ||| ||| | | ||||||| ||||| |||||||||||||  |||||| || ||| |||| ||||||||||| ||||||||    
T  52596715 acccttatttaatgtttgtccttttagttttagtggatatatcaaatacttcacaatttttttatgatggtatattcgtaaaaatattcaaaaaatt 52596619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 244
Target Start/End: Original strand, 38854615 - 38854736
Alignment:
Q  123 tatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttc-aatattagtgggtat 221  Q
    |||||| |||||||| |||||| |||||| ||| ||||||| |||| ||||||| ||| |||||  |||||| || || ||||  ||||| | || |||     
T  38854615 tatttataagaaaaattcacaacttttaaagtatatttatt-tttagaagacttttctcaccctcgtttaatttttgttttttttaatatcaatgagtaa 38854713  T
Q  222 attaaatacttcacaaattttta 244  Q
    ||| |||||||||||||||||||    
T  38854714 attcaatacttcacaaattttta 38854736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 28695677 - 28695738
Alignment:
Q  253 tatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgattttt 314  Q
    |||||||||||||||| ||||| ||||| |||  | ||||||| ||||||| ||||||||||    
T  28695677 tatttgtaaaaatattcaaaaagttacactaattaatgattatattggtttagatgattttt 28695738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 130 - 315
Target Start/End: Original strand, 131735 - 131922
Alignment:
Q  130 aagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaata 229  Q
    ||||||||||||||| ||| ||||| ||||||||||| ||||||||| ||||||| | | | || ||| ||||||| ||||||||||| |||||| ||||    
T  131735 aagaaaaagtcacaacttt-aaggtgcatttattgttcaaaagacttttctaaccttcaataaaagtttgtctttttaatattagtggttatatttaata 131833  T
Q  230 ---cttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgatttttg 315  Q
       ||||||||||||||| |||||| ||||||||||||   || |||||||||||| || | ||||| |||| ||||||||||||||||    
T  131834 atacttcacaaatttttatgagggtatatttgtaaaaaacattcaaaaattacaattactaatgattgtcttcgttttgatgatttttg 131922  T

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Target: scaffold0015 (Bit Score: 69; Significance: 2e-30; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 115 - 315
Target Start/End: Complemental strand, 38987 - 38788
Alignment:
Q  115 tttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattag 214  Q
    ||||||| |||||| ||||||||||||||||||||||| || ||||||||||||||| | || |||| |||||||| |||| | || || ||||||||||    
T  38987 tttggtcttatttataagaaaaagtcacaatttttaagatatatttattgtttaaaatatttttctagcccttattgaatg-tcgttttatcaatattag 38889  T
Q  215 tgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgattttt 314  Q
    ||| ||| || |||| ||| |||||||||| ||| || |||||||||||| ||| |||||||| ||| ||| | ||||| | |||||  |||| ||||||    
T  38888 tggatatgtttaatagttcccaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaagaactaatgattgttttggtcgtgataattttt 38789  T

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Target: scaffold1809 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 116 - 281
Target Start/End: Complemental strand, 651 - 486
Alignment:
Q  116 ttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagt 215  Q
    |||||| || ||| |||||||||||||||  ||||||||  | |||||||||||||||||| | || |||| |||||||| | ||| ||| |||||||||    
T  651 ttggtcctaattataagaaaaagtcacaacatttaaggtgtagttattgtttaaaagacttttttatccctcatttaatgattgtcgttttaatattagt 552  T
Q  216 gggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaa 281  Q
    || |  ||| |||  |||||||  || ||  ||||| ||||||||||||| |||||||| ||||||    
T  551 ggatccatttaatgtttcacaacattctataagggtatatttgtaaaaatctttaaaaagttacaa 486  T

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Target: scaffold0024 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 314
Target Start/End: Original strand, 154341 - 154532
Alignment:
Q  123 tatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtata 222  Q
    |||||| |||||||  | |||| |||||||||  | |||||||||||||||| | | || |  |||||||||||| ||||||| |||||| |||||| ||    
T  154341 tatttataagaaaatattacaacttttaaggtgtagttattgtttaaaagacctttttaccttttatttaatgtttgtctttttaatattggtgggtgta 154440  T
Q  223 ttaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaattacaataaccagtgattatcttggttttgatgattttt 314  Q
    || ||| |||||||  |||||| |||||  | |||||||||||||| || || ||||| |||  | ||| | | |||||||||||| |||||    
T  154441 tttaatgcttcacagttttttatgagggcatgtttgtaaaaatattcaacaagttacactaattaatgagtgtattggttttgatgtttttt 154532  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 280
Target Start/End: Original strand, 2225619 - 2225738
Alignment:
Q  161 attgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaatacttcacaaatttttaagagggtgtatttgta 260  Q
    |||||||||||||||| |||| |  ||||||||||||  | |||| ||||||||||| | |||| |||  ||||||| |||||| || ||| ||||||||    
T  2225619 attgtttaaaagacttttctaccatttatttaatgtttttgtttttaatattagtggttgtatttaatgtttcacaactttttatgaaggtatatttgta 2225718  T
Q  261 aaaatatttaaaaaattaca 280  Q
    ||||||||| |||| |||||    
T  2225719 aaaatatttcaaaagttaca 2225738  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 3257319 - 3257255
Alignment:
Q  160 tattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatatt 224  Q
    ||||||||||||||||| |||| | ||||||||||||| ||||||| ||||||||||| ||||||    
T  3257319 tattgtttaaaagacttttctatctcttatttaatgtttgtctttttaatattagtggatatatt 3257255  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 274
Target Start/End: Complemental strand, 11691211 - 11691055
Alignment:
Q  116 ttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagt 215  Q
    |||||| |||||| ||  ||| ||| |||||||| ||||  | |||||  |||||||||||  ||| |||| ||||||||||  |||||| ||| |||||    
T  11691211 ttggtcctatttataaacaaatgtcgcaattttttaggtgtagttatttcttaaaagactt--ctatccctcatttaatgtttctctttttaatcttagt 11691114  T
Q  216 gggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaa 274  Q
    | || |||| |||| |||| ||  ||||| |||| |||||||||||||||||| |||||    
T  11691113 gagtgtatttaatatttcataatattttatgaggatgtatttgtaaaaatattcaaaaa 11691055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 261
Target Start/End: Original strand, 6688795 - 6688928
Alignment:
Q  130 aagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttattta--atgttggtcttttcaatattagtgggtatattaaa 227  Q
    |||||||  |||||| |||||||||  | |||||||||||||||||| |||| ||||||||||  ||||| || |||   ||||||||  || |||| ||    
T  6688795 aagaaaatatcacaacttttaaggtgtagttattgtttaaaagacttttctatcccttatttaatatgtttgtttttaatatattagtaagtgtatttaa 6688894  T
Q  228 tacttcacaaatttttaagagggtgtatttgtaa 261  Q
    | ||| |||| |||||| |||||| |||||||||    
T  6688895 tgctttacaattttttatgagggtatatttgtaa 6688928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 280
Target Start/End: Original strand, 18705043 - 18705157
Alignment:
Q  166 ttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaat 265  Q
    ||||||||||| | || || ||||||||||||  | |||| ||||||| | ||| |||| ||| |||||||| ||||||  ||| | |||||||||||||    
T  18705043 ttaaaagacttttttaccctttatttaatgtttttgtttttaatattaataggtgtatttaatgcttcacaactttttataaggatatatttgtaaaaat 18705142  T
Q  266 atttaaaaaattaca 280  Q
    ||| ||||| |||||    
T  18705143 attcaaaaagttaca 18705157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 279
Target Start/End: Complemental strand, 11983705 - 11983573
Alignment:
Q  146 ttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtatattaaatacttcacaaatttttaa 245  Q
    |||||||||  | ||||||||||||||| || | || |||| ||||||||||  |||||| ||||||||||| | |||| |||  ||||| ||||||||     
T  11983705 ttttaaggtgtaattattgtttaaaagatttttttacccctcatttaatgtttctctttttaatattagtggatgtatttaatgtttcac-aatttttac 11983607  T
Q  246 gagggtgtatttgtaaaaatatttaaaaaattac 279  Q
     || || ||||||||||| |||| ||||| ||||    
T  11983606 aagagtatatttgtaaaagtattcaaaaagttac 11983573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 14417912 - 14418009
Alignment:
Q  178 tctaacccttatttaatgttggtcttttcaatattagtgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaaa 275  Q
    |||| ||||| |||||| || || |||| ||||||||||||| |||| ||| |||||||| |||||| || |||  |||||||| |||||| ||||||    
T  14417912 tctaccccttgtttaatatttgtattttaaatattagtgggtgtatttaatgcttcacaattttttatgaaggtaaatttgtaagaatattaaaaaaa 14418009  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 14917822 - 14917875
Alignment:
Q  221 tattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaa 274  Q
    |||| ||| |||||||| |||||| |||||| ||||||||||||| ||||||||    
T  14917822 tatttaattcttcacaattttttacgagggtatatttgtaaaaatgtttaaaaa 14917875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 274
Target Start/End: Original strand, 3015 - 3174
Alignment:
Q  115 tttggtcgtatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattag 214  Q
    ||||||| |||||| ||||||| ||||||| |||||||||  | |||||||||||||||||| |||| |||| ||| |||  |  |||||| ||||||||    
T  3015 tttggtcctatttataagaaaatgtcacaacttttaaggtgtagttattgtttaaaagacttttctatccctcattcaataattctctttttaatattag 3114  T
Q  215 tgggtatattaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaaa 274  Q
    ||| | |||| |||  |||||||  || ||  ||||  | ||||||||||| ||||||||    
T  3115 tggatgtatttaatgtttcacaacattctataagggcatgtttgtaaaaatgtttaaaaa 3174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 273
Target Start/End: Original strand, 51274 - 51424
Alignment:
Q  123 tatttaaaagaaaaagtcacaatttttaaggtacatttattgtttaaaagacttatctaacccttatttaatgttggtcttttcaatattagtgggtata 222  Q
    |||||| ||| ||| ||||||| |||||||||  |||||||| |||||||| || | || |||| |||||||  |  |||||| ||| ||||| ||| ||    
T  51274 tatttataagtaaatgtcacaacttttaaggtgtatttattgcttaaaagatttttttatccctcatttaataattctctttttaattttagttggtgta 51373  T
Q  223 ttaaatacttcacaaatttttaagagggtgtatttgtaaaaatatttaaaa 273  Q
    || |||  ||||||| |||||| |||||| || ||||||||||||| ||||    
T  51374 tttaatgtttcacaactttttatgagggtataattgtaaaaatattcaaaa 51424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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