View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4802-Insertion-5 (Length: 123)
Name: NF4802-Insertion-5
Description: NF4802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4802-Insertion-5 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 2e-59; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 47472439 - 47472554
Alignment:
| Q |
8 |
aaacattgcattatactctataatcttaagtattacataatcgaaaaattacagcagtcactttgctgtcggagacgtaggaacaattgaccagattacg |
107 |
Q |
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| T |
47472439 |
aaacattgcattatactctataatcttaagtattacataatcgaaaaattacagcagtcactttgctgtcggagacgtaggaacaattgaccagattacg |
47472538 |
T |
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| Q |
108 |
tgataaatcatttatg |
123 |
Q |
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| T |
47472539 |
tgataaatcatttatg |
47472554 |
T |
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Target: chr7; HSP #2
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 47475689 - 47475788
Alignment:
| Q |
16 |
cattatactctataatcttaagtattacataatcgaaaaattacagcagtcactttgctgtcggagacgtaggaacaattgaccagattacgtgataaat |
115 |
Q |
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| T |
47475689 |
cattgtactctataatctgaagtattgcataatcgaaaaactacaacaatcactctgttgtcggagacgtaggaccaattaaccaaactatgtgataaat |
47475788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 24801820 - 24801904
Alignment:
| Q |
16 |
cattatactctataatcttaagtattacataatcgaaaaattacagcagtcactttgctgtcggagacgtaggaacaattgacca |
100 |
Q |
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| T |
24801820 |
cattgtactctataatctgaagtattgcataatcgaaaaactacaacaatcactctgttgtcggagacgtaggaccaattaacca |
24801904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 8072893 - 8072827
Alignment:
| Q |
29 |
aatcttaagtattacataatcgaaaaattacagcagtcactttgctgtcggagacgtaggaacaatt |
95 |
Q |
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| T |
8072893 |
aatcgtaagaattgcataatagaaaaactacatcagccactttgctgtcggaaacgtaggcacaatt |
8072827 |
T |
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