View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4802_low_1 (Length: 467)
Name: NF4802_low_1
Description: NF4802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4802_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 245 - 458
Target Start/End: Complemental strand, 14948289 - 14948063
Alignment:
| Q |
245 |
agattgattttgtatatttgagagtttgatgtttaatttggttctgaaagtatgcaatttataaaagattgtcttggaataattggagttcatcgcaaca |
344 |
Q |
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| T |
14948289 |
agattgattttgtatatttgagagtttgatatttaatttggttctgaaagtatgcaatttataaaagattgtcttggaataattggagttcatcgcaaca |
14948190 |
T |
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| Q |
345 |
atgaacaatttcaaatctcaatcttttcaaatattatggaaaatcgtt-------------gtaactctcaagtatactttgttctctttcaagatacaa |
431 |
Q |
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| T |
14948189 |
atgaacaatttcaaatctcaatcttttcaaatattatggaaaatcgttgcctaaggatgaggtaactctcaagtatactttgttctctttcaagatacaa |
14948090 |
T |
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| Q |
432 |
agatgtaccttaccaacatagtattat |
458 |
Q |
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| T |
14948089 |
agatgtaccttaccaacatagtattat |
14948063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 145 - 237
Target Start/End: Complemental strand, 14948793 - 14948701
Alignment:
| Q |
145 |
aatgtcagttggagattgagatttcacgatgggatagctaaagtctttccgcatgtgcagtctgatcaccaccctattattgttcatactgag |
237 |
Q |
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| T |
14948793 |
aatgtcagttggagattgagatttcatgatgggatagctaaagtcttttcgggtgtgcagtatgatcaccaccctattattgttcatactgag |
14948701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 14948939 - 14948838
Alignment:
| Q |
19 |
gacattagaaaatgtcagaattttaacaatcgaatcaatgacatgaccgtagtttgatggaggttactacaacagggactaagtttacttggaggggacc |
118 |
Q |
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| T |
14948939 |
gacattagaaaatgtcagaattttaacaatcgaatcaatcac-----cgtaggttgatggaagttactacagcagg-actaagtttacttggaggggacc |
14948846 |
T |
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| Q |
119 |
taagtgga |
126 |
Q |
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| T |
14948845 |
taagtgga |
14948838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 338
Target Start/End: Complemental strand, 31046270 - 31046212
Alignment:
| Q |
280 |
atttggttctgaaagtatgcaatttataaaagattgtcttggaataattggagttcatc |
338 |
Q |
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| T |
31046270 |
atttggttttgaaaatatgcaatttataaaataatgtcttgaaatcattggagttcatc |
31046212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 345
Target Start/End: Original strand, 29544478 - 29544550
Alignment:
| Q |
273 |
atgtttaatttggttctgaaagtatgcaatttataaaagattgtcttggaataattggagttcatcgcaacaa |
345 |
Q |
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| T |
29544478 |
atgtttgattttgttttgaaaatatgcaatttataaaatattgacttagaatcatcagagttcatcacaacaa |
29544550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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