View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4802_low_4 (Length: 265)
Name: NF4802_low_4
Description: NF4802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4802_low_4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 38438756 - 38439011
Alignment:
| Q |
9 |
cacagatacaagtccatccaccacccattgcatcgaccaccgtatcaagtctcaaaagcaaccattttttgtcaatcaatttgatgtgaaacaggagcaa |
108 |
Q |
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| T |
38438756 |
cacagatacaagtccatccaccacccattgcatcgaccaccgtatcaagtctcaaaagcaaccattttttgtcaatcaatttgatgtgaaacaggagcaa |
38438855 |
T |
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| Q |
109 |
tccttgatgtttttcaatatattatgcctgtggtttttaagcaaatattcaactctttgttttgtttataagccaataagggtgactaaaacgtttggag |
208 |
Q |
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| T |
38438856 |
tccttgatgttttt-aatatattatgcctgtgattttttatcaaatattgaaccctttgttttgtttataagccagtaagggtgactaaaacgtttggag |
38438954 |
T |
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| Q |
209 |
caatgtttatctgggaaaaatatgaagatgatccttgctaaatgggaataatagtgc |
265 |
Q |
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| T |
38438955 |
caatgtttatctgggaaaaatatgaagatgatccttactaaatgggaataatagtgc |
38439011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 15666921 - 15666859
Alignment:
| Q |
13 |
gatacaagtccatccaccacccattgcatcgaccaccgtatcaagtctcaaaagcaaccattt |
75 |
Q |
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| T |
15666921 |
gatacaagtccatccaccacccactgcatcaaccacaacatcaagtctaaaaagcagccattt |
15666859 |
T |
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