View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4803-Insertion-1 (Length: 1022)

Name: NF4803-Insertion-1
Description: NF4803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4803-Insertion-1
NF4803-Insertion-1
[»] chr1 (21 HSPs)
chr1 (182-688)||(12189543-12190051)
chr1 (568-673)||(28636882-28636987)
chr1 (586-688)||(16222775-16222877)
chr1 (609-670)||(3399642-3399703)
chr1 (426-508)||(12185500-12185584)
chr1 (608-671)||(5911682-5911745)
chr1 (586-672)||(15214324-15214410)
chr1 (568-669)||(897434-897535)
chr1 (566-671)||(39368658-39368763)
chr1 (608-670)||(15204613-15204675)
chr1 (586-688)||(51758750-51758852)
chr1 (601-686)||(13208624-13208709)
chr1 (8-92)||(12189426-12189510)
chr1 (586-658)||(37097371-37097443)
chr1 (568-671)||(17112904-17113007)
chr1 (215-316)||(12185387-12185488)
chr1 (618-670)||(1843981-1844033)
chr1 (574-671)||(18308133-18308230)
chr1 (755-801)||(12190115-12190161)
chr1 (582-685)||(20427737-20427840)
chr1 (613-649)||(15193943-15193979)
[»] chr4 (26 HSPs)
chr4 (574-687)||(24558997-24559110)
chr4 (586-688)||(1684953-1685055)
chr4 (568-686)||(4881072-4881190)
chr4 (586-688)||(47066035-47066137)
chr4 (601-686)||(43600279-43600364)
chr4 (568-671)||(4904158-4904261)
chr4 (586-688)||(1152041-1152143)
chr4 (586-688)||(53300348-53300450)
chr4 (596-667)||(48464047-48464118)
chr4 (606-688)||(21539273-21539354)
chr4 (755-846)||(1152209-1152298)
chr4 (755-846)||(1684798-1684887)
chr4 (586-664)||(26075222-26075300)
chr4 (568-671)||(37751008-37751110)
chr4 (584-685)||(8573166-8573267)
chr4 (584-685)||(8575285-8575386)
chr4 (584-685)||(28461084-28461185)
chr4 (576-661)||(45641640-45641723)
chr4 (636-685)||(21317485-21317534)
chr4 (573-649)||(26075290-26075366)
chr4 (755-838)||(43600432-43600513)
chr4 (755-838)||(47065888-47065969)
chr4 (755-838)||(53300519-53300600)
chr4 (127-199)||(53814675-53814747)
chr4 (584-685)||(54186524-54186624)
chr4 (614-671)||(18941676-18941733)
[»] chr3 (23 HSPs)
chr3 (568-670)||(5498457-5498559)
chr3 (568-685)||(16457335-16457452)
chr3 (586-686)||(13845989-13846089)
chr3 (586-688)||(1627948-1628050)
chr3 (610-688)||(26707880-26707958)
chr3 (568-688)||(9633443-9633563)
chr3 (568-660)||(27259474-27259566)
chr3 (588-686)||(7407757-7407855)
chr3 (584-685)||(1613217-1613318)
chr3 (601-686)||(2550178-2550263)
chr3 (606-686)||(2943217-2943297)
chr3 (588-671)||(1654575-1654658)
chr3 (576-666)||(27713462-27713549)
chr3 (610-688)||(36035310-36035388)
chr3 (613-670)||(35083000-35083057)
chr3 (636-688)||(26735681-26735733)
chr3 (584-685)||(23358460-23358561)
chr3 (584-685)||(23363281-23363382)
chr3 (610-660)||(36035040-36035090)
chr3 (755-838)||(2550331-2550412)
chr3 (755-838)||(13846157-13846238)
chr3 (621-688)||(2179959-2180026)
chr3 (127-200)||(16239602-16239675)
[»] chr2 (18 HSPs)
chr2 (568-685)||(41573372-41573489)
chr2 (573-685)||(11017441-11017553)
chr2 (601-688)||(7718197-7718284)
chr2 (586-685)||(15513664-15513763)
chr2 (574-688)||(24479137-24479251)
chr2 (586-688)||(30267000-30267102)
chr2 (588-686)||(31342719-31342817)
chr2 (586-688)||(44920955-44921056)
chr2 (612-688)||(40016614-40016690)
chr2 (573-688)||(7702413-7702528)
chr2 (568-687)||(22966502-22966623)
chr2 (612-674)||(26734771-26734833)
chr2 (755-846)||(44921122-44921211)
chr2 (575-672)||(15540316-15540413)
chr2 (584-685)||(45404711-45404812)
chr2 (610-662)||(27151259-27151311)
chr2 (755-838)||(30267168-30267249)
chr2 (617-654)||(7724916-7724953)
[»] chr5 (33 HSPs)
chr5 (567-673)||(9333577-9333683)
chr5 (567-685)||(9354393-9354511)
chr5 (586-688)||(17037540-17037642)
chr5 (568-668)||(10869417-10869516)
chr5 (586-681)||(31068971-31069065)
chr5 (588-686)||(5079067-5079165)
chr5 (588-686)||(7410823-7410921)
chr5 (566-652)||(18191886-18191972)
chr5 (607-688)||(19985013-19985094)
chr5 (568-671)||(12042195-12042298)
chr5 (568-670)||(30786246-30786348)
chr5 (586-688)||(23679438-23679540)
chr5 (586-688)||(23855271-23855373)
chr5 (618-685)||(37233061-37233128)
chr5 (610-673)||(40402025-40402088)
chr5 (620-685)||(42076078-42076143)
chr5 (576-651)||(11833279-11833354)
chr5 (755-843)||(23616663-23616749)
chr5 (755-843)||(23848060-23848146)
chr5 (582-630)||(28080093-28080141)
chr5 (582-684)||(4376581-4376683)
chr5 (567-685)||(15160365-15160483)
chr5 (567-634)||(17535349-17535416)
chr5 (568-688)||(31571008-31571132)
chr5 (568-685)||(30655180-30655297)
chr5 (568-633)||(12004566-12004630)
chr5 (121-189)||(6080029-6080097)
chr5 (584-685)||(19615036-19615137)
chr5 (755-838)||(5078919-5078999)
chr5 (586-683)||(11507342-11507438)
chr5 (586-683)||(11514714-11514810)
chr5 (586-683)||(11522115-11522211)
chr5 (586-683)||(11529528-11529624)
[»] chr8 (34 HSPs)
chr8 (565-685)||(6403569-6403689)
chr8 (568-685)||(29553608-29553725)
chr8 (588-686)||(28249078-28249176)
chr8 (568-670)||(31347328-31347430)
chr8 (586-687)||(17634473-17634574)
chr8 (601-686)||(45356115-45356200)
chr8 (568-688)||(6801831-6801951)
chr8 (568-670)||(5650964-5651066)
chr8 (586-688)||(19369911-19370013)
chr8 (586-688)||(19448445-19448547)
chr8 (586-688)||(19532529-19532631)
chr8 (586-688)||(5528740-5528842)
chr8 (588-670)||(25638806-25638888)
chr8 (601-671)||(29345443-29345513)
chr8 (586-687)||(25637641-25637742)
chr8 (586-688)||(18766914-18767016)
chr8 (573-688)||(5000663-5000778)
chr8 (581-671)||(31369124-31369214)
chr8 (755-846)||(19369756-19369845)
chr8 (582-685)||(19371273-19371376)
chr8 (755-846)||(19448613-19448702)
chr8 (755-846)||(19532374-19532463)
chr8 (755-846)||(25637808-25637897)
chr8 (622-688)||(6223434-6223500)
chr8 (610-688)||(14997642-14997720)
chr8 (584-685)||(19341425-19341526)
chr8 (568-685)||(26173781-26173896)
chr8 (755-846)||(5528908-5528997)
chr8 (755-845)||(18767082-18767171)
chr8 (755-838)||(25638972-25639053)
chr8 (755-838)||(28248933-28249014)
chr8 (755-838)||(45355966-45356047)
chr8 (582-654)||(29386473-29386547)
chr8 (601-685)||(8833509-8833593)
[»] chr6 (35 HSPs)
chr6 (588-686)||(16734804-16734902)
chr6 (568-688)||(23264497-23264619)
chr6 (568-671)||(29667933-29668038)
chr6 (588-685)||(15361714-15361811)
chr6 (580-688)||(34374816-34374926)
chr6 (586-688)||(6684091-6684192)
chr6 (588-686)||(11936770-11936868)
chr6 (586-688)||(12591830-12591932)
chr6 (586-688)||(14669347-14669449)
chr6 (568-685)||(4485569-4485686)
chr6 (601-686)||(11948750-11948835)
chr6 (586-688)||(17719724-17719826)
chr6 (573-666)||(9631178-9631271)
chr6 (573-671)||(23904370-23904468)
chr6 (586-674)||(15690435-15690523)
chr6 (565-670)||(1942545-1942650)
chr6 (573-649)||(6673659-6673734)
chr6 (600-670)||(10935800-10935870)
chr6 (586-685)||(2941002-2941102)
chr6 (608-685)||(10070674-10070751)
chr6 (568-671)||(6346876-6346979)
chr6 (581-673)||(27969933-27970025)
chr6 (610-688)||(30481229-30481307)
chr6 (755-838)||(11936621-11936702)
chr6 (755-838)||(11948601-11948682)
chr6 (755-838)||(17719577-17719658)
chr6 (584-685)||(7601338-7601439)
chr6 (573-670)||(9236013-9236110)
chr6 (584-685)||(14003868-14003969)
chr6 (585-685)||(2668457-2668557)
chr6 (577-673)||(4591138-4591234)
chr6 (755-846)||(14669192-14669281)
chr6 (755-805)||(34374994-34375044)
chr6 (601-685)||(2567453-2567537)
chr6 (758-838)||(15361883-15361961)
[»] scaffold0576 (2 HSPs)
scaffold0576 (588-685)||(6698-6795)
scaffold0576 (758-838)||(6867-6945)
[»] chr7 (26 HSPs)
chr7 (586-688)||(9242485-9242587)
chr7 (568-688)||(26608540-26608660)
chr7 (601-688)||(26224979-26225066)
chr7 (577-688)||(30089723-30089834)
chr7 (588-686)||(4685406-4685504)
chr7 (586-687)||(10022121-10022222)
chr7 (576-685)||(3234314-3234424)
chr7 (608-688)||(26205416-26205496)
chr7 (601-688)||(20277361-20277448)
chr7 (568-662)||(26619130-26619223)
chr7 (586-670)||(16170268-16170352)
chr7 (568-688)||(26621092-26621212)
chr7 (612-671)||(16086510-16086569)
chr7 (613-662)||(3374325-3374374)
chr7 (573-685)||(7711361-7711473)
chr7 (573-685)||(28312660-28312772)
chr7 (567-634)||(14803115-14803182)
chr7 (567-634)||(15250109-15250176)
chr7 (573-688)||(27135908-27136028)
chr7 (582-674)||(2048423-2048513)
chr7 (755-838)||(4685257-4685338)
chr7 (755-838)||(20277212-20277293)
chr7 (568-671)||(29932367-29932469)
chr7 (755-844)||(9242332-9242419)
chr7 (755-838)||(3374563-3374645)
chr7 (606-687)||(8241615-8241695)
[»] scaffold0684 (2 HSPs)
scaffold0684 (586-688)||(748-850)
scaffold0684 (755-844)||(595-682)
[»] scaffold0069 (1 HSPs)
scaffold0069 (601-688)||(40699-40786)
[»] scaffold0002 (1 HSPs)
scaffold0002 (575-688)||(446284-446397)
[»] scaffold0007 (1 HSPs)
scaffold0007 (568-652)||(8724-8807)


Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 182 - 688
Target Start/End: Original strand, 12189543 - 12190051
Alignment:
Q  182 cccaaccacattttctaagctgaaactttgaatttgaaaataaaaagagaacgatacaaggaacagaaacaagtcattaagcagataacataacacgaaa 281  Q
    |||||| |||||||||||| |||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||| |||||||||||||||||||||    
T  12189543 cccaactacattttctaagatgaaacttcgaatttgaaaataaaaagagaacaatgcaaggaacggaaacaagtcattgagcagataacataacacgaaa 12189642  T
Q  282 atctcaccaaataggaaaaacatgatgacaattatgttcccgtgcttgaaattttttgagtaaaattagagtataaatccataccatgaaga--tctgtc 379  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| ||    
T  12189643 atctcaccaaataggaaaaacatgatgacaattatgttcctgtgcttgaaattttttgagtaaaactagagtataaatccataccatgaagatctctctc 12189742  T
Q  380 aaaatatctgttctcttaacgatgttgctacctaccttgttttgtagcc----taaccaagttgaagtatcatactcaatatctgcacctgaatgaacta 475  Q
    ||||||||||||||||||||||| |||    ||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||    
T  12189743 aaaatatctgttctcttaacgatcttg----ctaccttgttttgtagcctaattaaccaagttgaagtatcatactcaatatctgcacctgaatgaacta 12189838  T
Q  476 catgtgcatgatgtaataaaaccaaaatcatcaagttgaaaggnnnnnnntgaaccactagggaaaaagaaaaggaaggttgaatttatttgcactgcaa 575  Q
    |||||||||||||||||||||||||||| ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  12189839 catgtgcatgatgtaataaaaccaaaataatcaagttgaaaggaaaaaaatgaaccactagggaaaaagaaaaggaaggttgaatttatttgcactacaa 12189938  T
Q  576 cataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccg 675  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  12189939 cataattgagaattagaaacaattaaaaaatgtaactaaatcaagaaaaatattactaattaaatttagtaacatttgaacaattgttaggtaaagcccg 12190038  T
Q  676 agttactaaagag 688  Q
     ||||||||||||    
T  12190039 tgttactaaagag 12190051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 568 - 673
Target Start/End: Original strand, 28636882 - 28636987
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    |||| |||||||||| |||| ||| |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  28636882 cactacaacataattaagatctagtaacatttaaaaattgtaactaaatcaagaaaaatgttactaattcaatttagtaacatttgaataattgttaggt 28636981  T
Q  668 aaagtc 673  Q
    ||||||    
T  28636982 aaagtc 28636987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 586 - 688
Target Start/End: Original strand, 16222775 - 16222877
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||| |||||||||    
T  16222775 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaataaaatttagtaacacttgaataattgttaggtaaagcccgtgttactaaa 16222874  T
Q  686 gag 688  Q
    |||    
T  16222875 gag 16222877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 609 - 670
Target Start/End: Original strand, 3399642 - 3399703
Alignment:
Q  609 aactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaa 670  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3399642 aactaaatcatgaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaa 3399703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 426 - 508
Target Start/End: Original strand, 12185500 - 12185584
Alignment:
Q  426 gcctaaccaagttgaagtatcatactcaatatctgcacctgaatgaactacatgtgcatg--atgtaataaaaccaaaatcatca 508  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||  ||||||||||| |||||||||||    
T  12185500 gcctaaccaagtcgaagtatcatactcaatatctgcacctgaatgaactacatgcacatgatatgtaataaaatcaaaatcatca 12185584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 608 - 671
Target Start/End: Complemental strand, 5911745 - 5911682
Alignment:
Q  608 taactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaag 671  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  5911745 taactaaatcaagaaaaatgttactgattaaatttagtaacacttgaacaattgttaggtaaag 5911682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 586 - 672
Target Start/End: Original strand, 15214324 - 15214410
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagt 672  Q
    |||||| |||| || |||| || |||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||    
T  15214324 atttagtaacacttgaaaattgcaactaaatcaagaaaaattttactaattaaatttagtaatatttgaacaattgttgggtaaagt 15214410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 568 - 669
Target Start/End: Original strand, 897434 - 897535
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    |||| |||||||||| |||| |||  ||| || |||| ||| ||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  897434 cactacaacataattaagatatagttacagttgaaaattgttactaaatgaagaaaaatgttcctaattaaatttagtaacaattgaacaattgttaggt 897533  T
Q  668 aa 669  Q
    ||    
T  897534 aa 897535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 566 - 671
Target Start/End: Complemental strand, 39368763 - 39368658
Alignment:
Q  566 tgcactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttag 665  Q
    ||||||||||||||||||| || ||| |||   | |||||||| |||||||||||||||||||||||||||||| ||||| ||||||  |||||||||||    
T  39368763 tgcactgcaacataattgacatctagtaacccatgaaaaatgttactaaatcaagaaaaatgttactaattaaaattagtcacatttatacaattgttag 39368664  T
Q  666 gtaaag 671  Q
    | ||||    
T  39368663 gcaaag 39368658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 608 - 670
Target Start/End: Original strand, 15204613 - 15204675
Alignment:
Q  608 taactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaa 670  Q
    |||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||    
T  15204613 taactaaatcaagaaaaatgttgctaactaaatttagtaacacttgaacaattgttaggtaaa 15204675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 586 - 688
Target Start/End: Original strand, 51758750 - 51758852
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| ||||||||||||||||||||||||| ||||||||||||| |||| | |||||||| ||||||||||  ||  ||||||||    
T  51758750 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattattaggtaaagctcgtattactaaa 51758849  T
Q  686 gag 688  Q
    |||    
T  51758850 gag 51758852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 601 - 686
Target Start/End: Original strand, 13208624 - 13208709
Alignment:
Q  601 aaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaag 686  Q
    |||| ||||| ||||| ||||||||||||||||||||||||||||| || |||||| |||||||||||||  ||| ||||||||||    
T  13208624 aaaattgtaattaaattaagaaaaatgttactaattaaatttagtaccacttgaaccattgttaggtaaaacccgtgttactaaag 13208709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 12189426 - 12189510
Alignment:
Q  8 atttgtggttgtttcatttattccaaactactcaatcctttgtgaaaccctccacgaccatcgcctggtacgttaaagagtttca 92  Q
    |||||||||||| || |||| | ||||||||||||||||| ||||| |||||||||||| || ||||||| ||||||||||||||    
T  12189426 atttgtggttgtctcttttacttcaaactactcaatccttcgtgaatccctccacgaccgtcacctggtatgttaaagagtttca 12189510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 586 - 658
Target Start/End: Complemental strand, 37097443 - 37097371
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaa 658  Q
    |||||| |||| || |||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  37097443 atttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactgataaaatttagtaacatttgaacaa 37097371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 568 - 671
Target Start/End: Original strand, 17112904 - 17113007
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    |||| |||||||||||| || ||| || |||| |||| ||| |||||||||||||||||  ||||| |||||||| |||||| ||||||||||||||| |    
T  17112904 cactacaacataattgaaatctagtaataattgaaaattgttactaaatcaagaaaaatagtactagttaaattttgtaacacttgaacaattgttagtt 17113003  T
Q  668 aaag 671  Q
    ||||    
T  17113004 aaag 17113007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 215 - 316
Target Start/End: Original strand, 12185387 - 12185488
Alignment:
Q  215 ttgaaaataaaaagagaacgatacaaggaacagaaacaagtcattaagcagataacataacacgaaaatctcaccaaataggaaaaacatgatgacaatt 314  Q
    ||||||||| ||||||||| |||||| ||||| ||||||||  |  |  | |||||||||||||||||||||||| |||||| ||||||||||| |||||    
T  12185387 ttgaaaatacaaagagaacaatacaaagaacaaaaacaagttttcgaataaataacataacacgaaaatctcacctaataggtaaaacatgatggcaatt 12185486  T
Q  315 at 316  Q
    ||    
T  12185487 at 12185488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 618 - 670
Target Start/End: Original strand, 1843981 - 1844033
Alignment:
Q  618 aagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaa 670  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  1843981 aagaaaaatgttactgattgaatttagtaacatttgaacaattgttaggtaaa 1844033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 574 - 671
Target Start/End: Original strand, 18308133 - 18308230
Alignment:
Q  574 aacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaag 671  Q
    ||||||||||| || ||| |||| || |||| ||| ||||||||||||||||||||||  |||| | ||| ||||||||  |||||||||||||||||    
T  18308133 aacataattgacatctagtaacatttgaaaattgttactaaatcaagaaaaatgttacagattacaattattaacatttctacaattgttaggtaaag 18308230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 755 - 801
Target Start/End: Original strand, 12190115 - 12190161
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttata 801  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||    
T  12190115 aacacttttgatattactagtaacactaataaaatgttacatttata 12190161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 582 - 685
Target Start/End: Complemental strand, 20427840 - 20427737
Alignment:
Q  582 tgagatttagaaacaattaaaaaatgtaactaaatcaagaa-aaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagtta 680  Q
    |||||||||| ||||||| |||| |||||||||||||| || ||||||||||| ||| || | ||||| |||| |||| |||||||||||  ||| ||||    
T  20427840 tgagatttagtaacaattcaaaattgtaactaaatcaaaaacaaatgttactatttagatcttgtaacttttg-acaaatgttaggtaaaacccgtgtta 20427742  T
Q  681 ctaaa 685  Q
    |||||    
T  20427741 ctaaa 20427737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 613 - 649
Target Start/End: Original strand, 15193943 - 15193979
Alignment:
Q  613 aaatcaagaaaaatgttactaattaaatttagtaaca 649  Q
    ||||||||||||||||||||||||||||||| |||||    
T  15193943 aaatcaagaaaaatgttactaattaaatttattaaca 15193979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 6e-43; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 574 - 687
Target Start/End: Complemental strand, 24559110 - 24558997
Alignment:
Q  574 aacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtc 673  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |    
T  24559110 aacataattgagatttagtaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacgattgttaggtaacggc 24559011  T
Q  674 cgagttactaaaga 687  Q
     | |||||||||||    
T  24559010 tgtgttactaaaga 24558997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 586 - 688
Target Start/End: Complemental strand, 1685055 - 1684953
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| ||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||| ||||||||| |||||||||    
T  1685055 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaa 1684956  T
Q  686 gag 688  Q
    |||    
T  1684955 gag 1684953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 568 - 686
Target Start/End: Complemental strand, 4881190 - 4881072
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    |||| |||||||||||| ||  || |||| || |||| ||| ||||||||||||||||||||||| |||||||||||||| ||||| | |||||||||||    
T  4881190 cactacaacataattgacatccagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaatttagtaatatttgtataattgttaggt 4881091  T
Q  668 aaagtccgagttactaaag 686  Q
    |||||||| ||||||||||    
T  4881090 aaagtccgtgttactaaag 4881072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 586 - 688
Target Start/End: Complemental strand, 47066137 - 47066035
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| ||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||| ||| ||||| |||    
T  47066137 atttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggtaaagcccgtgttaccaaa 47066038  T
Q  686 gag 688  Q
    |||    
T  47066037 gag 47066035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 601 - 686
Target Start/End: Original strand, 43600279 - 43600364
Alignment:
Q  601 aaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaag 686  Q
    |||| ||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||| ||| ||||||||||    
T  43600279 aaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaaacttgaacaattgttaggtaaagcccgtgttactaaag 43600364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 568 - 671
Target Start/End: Complemental strand, 4904261 - 4904158
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    ||||||| ||||||| | ||  || |||| ||||||| ||| ||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||    
T  4904261 cactgcagcataattaacatccagtaacacttaaaaattgttactaaatcatgaaaaatgttactgattaaatttagtaacatttgtacaattgttaggt 4904162  T
Q  668 aaag 671  Q
    ||||    
T  4904161 aaag 4904158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 586 - 688
Target Start/End: Original strand, 1152041 - 1152143
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| ||||||||||| ||||||||||||||||||||||||| | |||| |  |||||||||||| ||||||||| |||||||||    
T  1152041 atttagcaacacttgaaaattgtaactaaattaagaaaaatgttactaattaaattttgcaacactcaaacaattgttagataaagtccgtgttactaaa 1152140  T
Q  686 gag 688  Q
    |||    
T  1152141 gag 1152143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 586 - 688
Target Start/End: Original strand, 53300348 - 53300450
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| ||||| ||||||||||||||||||| ||||||||||||||||||  | |||||||||||||||||| ||| ||||| |||    
T  53300348 atttagtaacacttgaaaattgtaattaaatcaagaaaaatgttagtaattaaatttagtaacacctaaacaattgttaggtaaagcccgtgttaccaaa 53300447  T
Q  686 gag 688  Q
    |||    
T  53300448 gag 53300450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 596 - 667
Target Start/End: Original strand, 48464047 - 48464118
Alignment:
Q  596 aattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    |||| |||| ||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  48464047 aattgaaaattgttactaaataaataaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 48464118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 606 - 688
Target Start/End: Complemental strand, 21539354 - 21539273
Alignment:
Q  606 tgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaagag 688  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| | ||||||  ||||||||||||    
T  21539354 tgtaactaaatcaaggaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagag 21539273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 755 - 846
Target Start/End: Original strand, 1152209 - 1152298
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattgcctagact 846  Q
    ||||||||| |||| |||||||||| ||| ||| ||||||||||||||  |||| ||| ||||||||||||||| | ||||||| |||||||    
T  1152209 aacactttttgtatcactagtaacaataaaaaagtgttacatttataa--tttttgagaagttgtaaaaagtgtcgcaaaattgtctagact 1152298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 755 - 846
Target Start/End: Complemental strand, 1684887 - 1684798
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattgcctagact 846  Q
    ||||||||| |||| |||||||||| ||| ||| ||||||||||||||  |||| ||| ||||||||||||||| | ||||||| |||||||    
T  1684887 aacactttttgtatcactagtaacaataaaaaagtgttacatttataa--tttttgagaagttgtaaaaagtgtcgcaaaattgtctagact 1684798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 586 - 664
Target Start/End: Complemental strand, 26075300 - 26075222
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgtta 664  Q
    |||||| |||||| ||||| ||| | || |||||||||| ||||||||| ||||||| |||||||| ||||||||||||    
T  26075300 atttagtaacaataaaaaattgttattagatcaagaaaattgttactaagtaaattttgtaacattcgaacaattgtta 26075222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 568 - 671
Target Start/End: Complemental strand, 37751110 - 37751008
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    |||| |||||||||||| ||  || ||||  | |||| ||| |||||||||| ||||||||||||||||||| | |||||||||||  |||||||||| |    
T  37751110 cactacaacataattgacatccagtaacatatgaaaattgtcactaaatcaa-aaaaatgttactaattaaaatcagtaacatttgcgcaattgttagat 37751012  T
Q  668 aaag 671  Q
    ||||    
T  37751011 aaag 37751008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 584 - 685
Target Start/End: Complemental strand, 8573267 - 8573166
Alignment:
Q  584 agatttagaaacaattaaaaaatgtaactaaatcaagaa-aaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttact 682  Q
    |||||||| |||| || |||| |||||||||||||| || || |||||||| ||| || | |||||||||| |||| |||||||||||| ||| ||||||    
T  8573267 agatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttg-acaaatgttaggtaaagcccgtgttact 8573169  T
Q  683 aaa 685  Q
    |||    
T  8573168 aaa 8573166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 584 - 685
Target Start/End: Complemental strand, 8575386 - 8575285
Alignment:
Q  584 agatttagaaacaattaaaaaatgtaactaaatcaagaa-aaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttact 682  Q
    |||||||| |||| || |||| |||||||||||||| || || |||||||| ||| || | |||||||||| |||| |||||||||||| ||| ||||||    
T  8575386 agatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttg-acaaatgttaggtaaagcccgtgttact 8575288  T
Q  683 aaa 685  Q
    |||    
T  8575287 aaa 8575285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 584 - 685
Target Start/End: Original strand, 28461084 - 28461185
Alignment:
Q  584 agatttagaaacaattaaaaaatgtaactaaatcaagaa-aaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttact 682  Q
    |||||||| |||| || |||| |||||||||||||| || || |||||||| ||| || | |||||||||| |||| ||| |||||||||||| ||||||    
T  28461084 agatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttg-acaaatgtcaggtaaagtccgtgttact 28461182  T
Q  683 aaa 685  Q
    |||    
T  28461183 aaa 28461185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 576 - 661
Target Start/End: Original strand, 45641640 - 45641723
Alignment:
Q  576 cataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattg 661  Q
    |||||||||||| ||| |||| ||||||||||  ||   |||| |||||||||||||||||| || |||||||||||| |||||||    
T  45641640 cataattgagatctagtaacatttaaaaaatggtac--catcatgaaaaatgttactaattatatctagtaacatttgcacaattg 45641723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 636 - 685
Target Start/End: Original strand, 21317485 - 21317534
Alignment:
Q  636 taaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    ||||||||||||||||| |||||||||||||||||| | | |||||||||    
T  21317485 taaatttagtaacatttcaacaattgttaggtaaaggctgtgttactaaa 21317534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 573 - 649
Target Start/End: Complemental strand, 26075366 - 26075290
Alignment:
Q  573 caacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaaca 649  Q
    |||||||||||| || ||  ||||||| |||| ||| |||| ||||||||||  |||||||| ||||||||||||||    
T  26075366 caacataattgaaatctaataacaattgaaaattgttactagatcaagaaaatggttactaagtaaatttagtaaca 26075290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 755 - 838
Target Start/End: Original strand, 43600432 - 43600513
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattg 838  Q
    ||||||||| |||| ||| |||||| ||| ||| ||||||||||||||  |||| ||| ||||||||||||||| | |||||||    
T  43600432 aacactttttgtatcacttgtaacaataaaaaagtgttacatttataa--tttttgaggagttgtaaaaagtgtcgcaaaattg 43600513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 755 - 838
Target Start/End: Complemental strand, 47065969 - 47065888
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattg 838  Q
    ||||||||| |||| |||||||||| ||| ||| |||||||||||||| ||||   || ||||||||||||||| | |||||||    
T  47065969 aacactttttgtataactagtaacaataaaaaagtgttacatttataaatttt--aagaagttgtaaaaagtgtggcaaaattg 47065888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 755 - 838
Target Start/End: Original strand, 53300519 - 53300600
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattg 838  Q
    ||||||||| |||| |||||||||| ||| ||| |||||||||||||| ||||   || ||||||||||||||| | |||||||    
T  53300519 aacactttttgtataactagtaacaataaaaaagtgttacatttataaatttt--aagaagttgtaaaaagtgtggcaaaattg 53300600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 53814747 - 53814675
Alignment:
Q  127 ttataagtggagataaacctcacctaagaagccggttttgtaggattgtgtaggtcccaaccacattttctaa 199  Q
    |||||||||| ||||| |||||||| | ||||||||||||| |||||||||  | |||||||||  |||||||    
T  53814747 ttataagtggggataatcctcacctcacaagccggttttgtgggattgtgttaggcccaaccacgatttctaa 53814675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 584 - 685
Target Start/End: Original strand, 54186524 - 54186624
Alignment:
Q  584 agatttagaaacaattaaaaaatgtaactaaatcaagaa-aaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttact 682  Q
    |||||||| |||| || |||| |||||||||||||| || || |||||||| ||| || | |||||||||| |||| |||||||||||| ||| ||||||    
T  54186524 agatttagtaacactttaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttg-acaaatgttaggtaaag-ccgtgttact 54186621  T
Q  683 aaa 685  Q
    |||    
T  54186622 aaa 54186624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 614 - 671
Target Start/End: Complemental strand, 18941733 - 18941676
Alignment:
Q  614 aatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaag 671  Q
    ||||| |||||||||| ||||||| ||  | |||||||||||||||||||| ||||||    
T  18941733 aatcacgaaaaatgttgctaattatatccaataacatttgaacaattgttaagtaaag 18941676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 4e-41; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 568 - 670
Target Start/End: Original strand, 5498457 - 5498559
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  5498457 cactacaacataattgagatttagtaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacttctgaacaattgttaggt 5498556  T
Q  668 aaa 670  Q
    |||    
T  5498557 aaa 5498559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 568 - 685
Target Start/End: Complemental strand, 16457452 - 16457335
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    |||| |||||| ||||||||| |  ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16457452 cactacaacatgattgagattcaacaacaattgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggt 16457353  T
Q  668 aaagtccgagttactaaa 685  Q
    ||||  || |||||||||    
T  16457352 aaagctcgtgttactaaa 16457335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 586 - 686
Target Start/End: Original strand, 13845989 - 13846089
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||| |||||||||    
T  13845989 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaa 13846088  T
Q  686 g 686  Q
    |    
T  13846089 g 13846089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 586 - 688
Target Start/End: Complemental strand, 1628050 - 1627948
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| ||||| |||    
T  1628050 atttagtaacacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacacttgaacaattgttaagtaaagtccgtgttacaaaa 1627951  T
Q  686 gag 688  Q
    |||    
T  1627950 gag 1627948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 610 - 688
Target Start/End: Original strand, 26707880 - 26707958
Alignment:
Q  610 actaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaagag 688  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  26707880 actaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtctctgttactaaagag 26707958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 568 - 688
Target Start/End: Complemental strand, 9633563 - 9633443
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    |||| ||||||||||||||||||| |||| || |||| | | |||||||| | ||||||||||||||||||||||||| |||||| ||||||||||||||    
T  9633563 cactacaacataattgagatttagtaacacttgaaaactattactaaatcgaaaaaaatgttactaattaaatttagttacatttaaacaattgttaggt 9633464  T
Q  668 aaagtccgagttactaaagag 688  Q
    |||| ||  ||||||||||||    
T  9633463 aaagcccctgttactaaagag 9633443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 568 - 660
Target Start/End: Complemental strand, 27259566 - 27259474
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaatt 660  Q
    |||| ||||||||||||||||||| ||||||| |||| | | ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27259566 cactacaacataattgagatttagtaacaattgaaaactattactaaatcaagcaaaatgttactaattaaatttagtaacatttgaacaatt 27259474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 588 - 686
Target Start/End: Complemental strand, 7407855 - 7407757
Alignment:
Q  588 ttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaag 686  Q
    |||| |||| || |||| ||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| ||| ||||||||||    
T  7407855 ttagtaacacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaag 7407757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 584 - 685
Target Start/End: Complemental strand, 1613318 - 1613217
Alignment:
Q  584 agatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttacta 683  Q
    |||||||| |||| || |||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| |||||||||| ||  |||||||    
T  1613318 agatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttgaccaatttttaggtaaagcccctgttacta 1613219  T
Q  684 aa 685  Q
    ||    
T  1613218 aa 1613217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 601 - 686
Target Start/End: Original strand, 2550178 - 2550263
Alignment:
Q  601 aaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaag 686  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | | ||||||||||    
T  2550178 aaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcctgtgttactaaag 2550263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 606 - 686
Target Start/End: Complemental strand, 2943297 - 2943217
Alignment:
Q  606 tgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaag 686  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||    
T  2943297 tgtaattaaatcaagaaaaatgttactaattaaatttagtaacattcgaacaattgttaggttaagcccgtgttactaaag 2943217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 588 - 671
Target Start/End: Original strand, 1654575 - 1654658
Alignment:
Q  588 ttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaag 671  Q
    |||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||    
T  1654575 ttagtaacaattgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaagtaaag 1654658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 576 - 666
Target Start/End: Complemental strand, 27713549 - 27713462
Alignment:
Q  576 cataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttagg 666  Q
    |||||||||||||||| |||| ||||||||||||||||| |||| |||   |||||||||||||||||||||||||| || ||||||||||    
T  27713549 cataattgagatttagtaacatttaaaaaatgtaactaattcaaaaaa---gttactaattaaatttagtaacatttaaataattgttagg 27713462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 610 - 688
Target Start/End: Original strand, 36035310 - 36035388
Alignment:
Q  610 actaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaagag 688  Q
    |||||||||||||||||  ||||||||||||||||||||| ||| |||||||||||||||||  || ||||||||||||    
T  36035310 actaaatcaagaaaaataatactaattaaatttagtaacaattgtacaattgttaggtaaagctcgtgttactaaagag 36035388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 613 - 670
Target Start/End: Original strand, 35083000 - 35083057
Alignment:
Q  613 aaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaa 670  Q
    |||||||||||||||||| ||| |||||||||||| ||||||||||||||||| ||||    
T  35083000 aaatcaagaaaaatgttagtaaataaatttagtaatatttgaacaattgttagataaa 35083057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 636 - 688
Target Start/End: Original strand, 26735681 - 26735733
Alignment:
Q  636 taaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaagag 688  Q
    ||||||||||||||||||||||||||||||||||| |||  ||||||||||||    
T  26735681 taaatttagtaacatttgaacaattgttaggtaaaatccatgttactaaagag 26735733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 584 - 685
Target Start/End: Complemental strand, 23358561 - 23358460
Alignment:
Q  584 agatttagaaacaattaaaaaatgtaactaaatcaagaa-aaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttact 682  Q
    |||||||| |||| || |||| |||||||||||||| || || |||||||| ||| || | |||||||||| |||| |||||||||||| ||| ||||||    
T  23358561 agatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttg-acaaatgttaggtaaagcccgtgttact 23358463  T
Q  683 aaa 685  Q
    |||    
T  23358462 aaa 23358460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 584 - 685
Target Start/End: Complemental strand, 23363382 - 23363281
Alignment:
Q  584 agatttagaaacaattaaaaaatgtaactaaatcaagaa-aaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttact 682  Q
    |||||||| |||| || |||| |||||||||||||| || || |||||||| ||| || | |||||||||| |||| |||||||||||| ||| ||||||    
T  23363382 agatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttg-acaaatgttaggtaaagcccgtgttact 23363284  T
Q  683 aaa 685  Q
    |||    
T  23363283 aaa 23363281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 610 - 660
Target Start/End: Original strand, 36035040 - 36035090
Alignment:
Q  610 actaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaatt 660  Q
    |||||||||||||||||  ||||||||||||||||||||| ||| ||||||    
T  36035040 actaaatcaagaaaaataatactaattaaatttagtaacaattgtacaatt 36035090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 755 - 838
Target Start/End: Original strand, 2550331 - 2550412
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattg 838  Q
    ||||||||| |||| ||| |||||| ||| ||| ||||||||||||||  |||| ||| ||||||||||||||| | |||||||    
T  2550331 aacactttttgtatcacttgtaacaataaaaaagtgttacatttataa--tttttgaggagttgtaaaaagtgtcgcaaaattg 2550412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 755 - 838
Target Start/End: Original strand, 13846157 - 13846238
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattg 838  Q
    ||||||||| |||| ||| |||||| ||| ||| ||||||||||||||  |||| ||| ||||||||||||||| | |||||||    
T  13846157 aacactttttgtatcacttgtaacaataaaaaagtgttacatttataa--tttttgaggagttgtaaaaagtgtcgcaaaattg 13846238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 621 - 688
Target Start/End: Original strand, 2179959 - 2180026
Alignment:
Q  621 aaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaagag 688  Q
    |||||||||| | ||||||||||| | ||||||||||||| || |||||| |||  ||||||||||||    
T  2179959 aaaaatgttaatgattaaatttagaatcatttgaacaattcttgggtaaattccctgttactaaagag 2180026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 16239602 - 16239675
Alignment:
Q  127 ttataagtggagataaacctcacctaagaagccggttttgtaggattgtgtaggtcccaaccacattttctaag 200  Q
    |||||||||| |  ||||||||||| | ||||||||||||| |||||||||  | |||||||||  ||||||||    
T  16239602 ttataagtgggggcaaacctcacctcacaagccggttttgtgggattgtgttaggcccaaccacgatttctaag 16239675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 8e-36; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 568 - 685
Target Start/End: Original strand, 41573372 - 41573489
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    |||| ||||| ||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  41573372 cactacaacaaaattgagatttagtaacattcaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacagttaaacaattgttaggt 41573471  T
Q  668 aaagtccgagttactaaa 685  Q
    |||  ||| |||||||||    
T  41573472 aaaccccgtgttactaaa 41573489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 573 - 685
Target Start/End: Original strand, 11017441 - 11017553
Alignment:
Q  573 caacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagt 672  Q
    ||||||||||||||| ||| ||||||| ||||  || ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  11017441 caacataattgagatctagtaacaattgaaaaccgttactaaataaagaaaattgttactaattaaatttagtaacatttgaccaattgttaggtaaagt 11017540  T
Q  673 ccgagttactaaa 685  Q
    ||| |||||||||    
T  11017541 ccgtgttactaaa 11017553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 601 - 688
Target Start/End: Original strand, 7718197 - 7718284
Alignment:
Q  601 aaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaagag 688  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||| ||||||||| ||||||||||||    
T  7718197 aaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacacatgaacaattgttagataaagtccgtgttactaaagag 7718284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 586 - 685
Target Start/End: Original strand, 15513664 - 15513763
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||||||||||| ||||| |||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||  || |||||||||    
T  15513664 atttagtaacaattaaaaattgtaagtaaatcaagaaaaatgttactagttaaattttgtaacacttgaacaattgttaggtaaagctcgtgttactaaa 15513763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 574 - 688
Target Start/End: Original strand, 24479137 - 24479251
Alignment:
Q  574 aacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtc 673  Q
    |||||||||||||| ||| |||| || |||| | | |||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||      
T  24479137 aacataattgagatatagtaacacttgaaaattattactaaatcaagataactgttactaattaaatttagtaacatttgaacaattcttaggtaaagct 24479236  T
Q  674 cgagttactaaagag 688  Q
    || ||||||||||||    
T  24479237 cgtgttactaaagag 24479251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 586 - 688
Target Start/End: Original strand, 30267000 - 30267102
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| ||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||| ||| ||||| |||    
T  30267000 atttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggtaaagcccgtgttaccaaa 30267099  T
Q  686 gag 688  Q
    |||    
T  30267100 gag 30267102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 588 - 686
Target Start/End: Complemental strand, 31342817 - 31342719
Alignment:
Q  588 ttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaag 686  Q
    |||| |||| || |||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||| ||||||||||    
T  31342817 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaag 31342719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 586 - 688
Target Start/End: Original strand, 44920955 - 44921056
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| |||||||||||||| |||||||||||||||||||||||||||||  | ||||||||||||||||||  || |||||||||    
T  44920955 atttagtaacacttgaaaattgtaactaaatcaa-aaaaatgttactaattaaatttagtaacacctaaacaattgttaggtaaagctcgtgttactaaa 44921053  T
Q  686 gag 688  Q
    |||    
T  44921054 gag 44921056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 612 - 688
Target Start/End: Original strand, 40016614 - 40016690
Alignment:
Q  612 taaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaagag 688  Q
    ||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||| ||   |||||||||||    
T  40016614 taaatcaagtaaaatgttactgattaaatttagtaacatttgaataattgttaggtaaagaccctattactaaagag 40016690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 573 - 688
Target Start/End: Original strand, 7702413 - 7702528
Alignment:
Q  573 caacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagt 672  Q
    |||||||||||| || ||| ||||  | |||| | | ||||||| || |||||||||| |||||||| ||||||||||||| |||||||||||||||||     
T  7702413 caacataattgacatctagtaacacatgaaaattattactaaattaaaaaaaatgttattaattaaaattagtaacatttgtacaattgttaggtaaagc 7702512  T
Q  673 ccgagttactaaagag 688  Q
    ||   |||||||||||    
T  7702513 ccatattactaaagag 7702528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 568 - 687
Target Start/End: Original strand, 22966502 - 22966623
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaa--aaatgttactaattaaatttagtaacatttgaacaattgttag 665  Q
    |||| ||| ||||||||||||||| |||| || |||| | | ||||||| || ||  |||| |||||||| ||||||||| |||||| ||||||||||||    
T  22966502 cactacaatataattgagatttagtaacacttgaaaactattactaaataaaaaataaaatattactaatgaaatttagttacatttaaacaattgttag 22966601  T
Q  666 gtaaagtccgagttactaaaga 687  Q
    |||||| ||  |||||||||||    
T  22966602 gtaaagcccctgttactaaaga 22966623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 612 - 674
Target Start/End: Original strand, 26734771 - 26734833
Alignment:
Q  612 taaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtcc 674  Q
    ||||||||||||||  ||| ||||||||||||| || ||||||| ||||||||||||||||||    
T  26734771 taaatcaagaaaaaacttattaattaaatttagcaatatttgaataattgttaggtaaagtcc 26734833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 755 - 846
Target Start/End: Original strand, 44921122 - 44921211
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattgcctagact 846  Q
    ||||||||| |||| |||||||||| ||| ||| ||||||||||||||  |||| ||| ||||||||||| ||| | ||||||| |||||||    
T  44921122 aacactttttgtatcactagtaacaataaaaaagtgttacatttataa--tttttgagaagttgtaaaaattgtcgcaaaattgtctagact 44921211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 575 - 672
Target Start/End: Complemental strand, 15540413 - 15540316
Alignment:
Q  575 acataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaa-atgttactaattaaatttagtaacatttgaacaattgttaggtaaagt 672  Q
    ||||||||||| ||||| |||| || |||| | | |||||||||  |||| ||||||||||||| || ||||||||||| |||||||| ||||||||||    
T  15540413 acataattgagctttagtaacatttgaaaagtattactaaatcacaaaaatatgttactaattatatctagtaacattt-aacaattgataggtaaagt 15540316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 584 - 685
Target Start/End: Complemental strand, 45404812 - 45404711
Alignment:
Q  584 agatttagaaacaattaaaaaatgtaactaaatcaagaa-aaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttact 682  Q
    |||||||| |||| || |||| |||||||||||||| || || |||||||| ||| || | |||||||||| |||| |||||||||||| ||| ||||||    
T  45404812 agatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttg-acaaatgttaggtaaagcccgtgttact 45404714  T
Q  683 aaa 685  Q
    |||    
T  45404713 aaa 45404711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 610 - 662
Target Start/End: Complemental strand, 27151311 - 27151259
Alignment:
Q  610 actaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgt 662  Q
    ||||||||||||||||||| |||||||||| ||||| ||| ||| ||||||||    
T  27151311 actaaatcaagaaaaatgtcactaattaaaattagtgacacttgtacaattgt 27151259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 755 - 838
Target Start/End: Original strand, 30267168 - 30267249
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattg 838  Q
    ||||||||| |||| |||||||||| ||| ||| |||||||||||||| ||||   || ||||||||||||||| | |||||||    
T  30267168 aacactttttgtataactagtaacaataaaaaagtgttacatttataaatttt--aagaagttgtaaaaagtgtggcaaaattg 30267249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 617 - 654
Target Start/End: Original strand, 7724916 - 7724953
Alignment:
Q  617 caagaaaaatgttactaattaaatttagtaacatttga 654  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  7724916 caagaaaaatgttactatttaaatttagtaatatttga 7724953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 5e-34; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 567 - 673
Target Start/End: Complemental strand, 9333683 - 9333577
Alignment:
Q  567 gcactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttagg 666  Q
    ||||| |||||| |||||||||| | ||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9333683 gcactacaacatgattgagattttgtaacaattgaaaattgtaacaaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttagg 9333584  T
Q  667 taaagtc 673  Q
    |||||||    
T  9333583 taaagtc 9333577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 567 - 685
Target Start/End: Complemental strand, 9354511 - 9354393
Alignment:
Q  567 gcactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttagg 666  Q
    ||||| |||||| |||||||||||| ||||||| |||| ||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  9354511 gcactacaacatgattgagatttagtaacaattgaaaattgtaactgaatcaagaaaaatgttactaattaaatttaataacatttgagcaattgttagg 9354412  T
Q  667 taaagtccgagttactaaa 685  Q
    ||||| ||  |||||||||    
T  9354411 taaagcccatgttactaaa 9354393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 586 - 688
Target Start/End: Original strand, 17037540 - 17037642
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  17037540 atttagtaacacttgaaaatcgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtcagtgttactaaa 17037639  T
Q  686 gag 688  Q
    |||    
T  17037640 gag 17037642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 568 - 668
Target Start/End: Original strand, 10869417 - 10869516
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    |||| ||||||||||||||| |||| ||||||||||| |||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10869417 cactacaacataattgagatctagatacaattaaaaattgta-ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggt 10869515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 586 - 681
Target Start/End: Complemental strand, 31069065 - 31068971
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttac 681  Q
    |||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||    
T  31069065 atttagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaaca-ttgaacaattgttaggtaaagcccgtgttac 31068971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 588 - 686
Target Start/End: Complemental strand, 5079165 - 5079067
Alignment:
Q  588 ttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaag 686  Q
    |||| |||| || |||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||| ||||||||||    
T  5079165 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaag 5079067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 588 - 686
Target Start/End: Original strand, 7410823 - 7410921
Alignment:
Q  588 ttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaag 686  Q
    |||| |||| || |||| |||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||| ||||||||||    
T  7410823 ttagtaacatttcaaaattgtaactaaatcaaaaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaag 7410921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 566 - 652
Target Start/End: Complemental strand, 18191972 - 18191886
Alignment:
Q  566 tgcactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacattt 652  Q
    |||||| ||| ||||||||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  18191972 tgcactacaaaataattgagatttagtaacaattgaaaattgtaactaaattaagaaaaatgttactaattaaatttagtaacattt 18191886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 607 - 688
Target Start/End: Original strand, 19985013 - 19985094
Alignment:
Q  607 gtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaagag 688  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||||||    
T  19985013 gtaactaaatcaaggaaaatgttactaattagatttagtaacatttgaataattgttaggtaaagtccaggttactaaagag 19985094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 568 - 671
Target Start/End: Complemental strand, 12042298 - 12042195
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    |||| |||||||||| ||||  || || | || |||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  12042298 cactacaacataattaagatccagtaatatttgaaaattgtaactaaatcaagaaaaatgttactgattcaatttagtaacatttgaacaattgttaggt 12042199  T
Q  668 aaag 671  Q
    ||||    
T  12042198 aaag 12042195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 568 - 670
Target Start/End: Original strand, 30786246 - 30786348
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    |||| |||||||||| |||| ||| |||| || |||| ||||||| ||||||||||||||||||| ||| |||||||||||||||||| |||||||||||    
T  30786246 cactacaacataattaagatctagtaacacttgaaaattgtaacttaatcaagaaaaatgttactgattcaatttagtaacatttgaataattgttaggt 30786345  T
Q  668 aaa 670  Q
    |||    
T  30786346 aaa 30786348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 586 - 688
Target Start/End: Original strand, 23679438 - 23679540
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| ||||||||||||||||||||||||| ||||||||||| | |||||| |||||||| |||| |||||| || |||||||||    
T  23679438 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttattaattaaattttgcaacattcgaacaattattagataaagttcgtgttactaaa 23679537  T
Q  686 gag 688  Q
    |||    
T  23679538 gag 23679540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 586 - 688
Target Start/End: Complemental strand, 23855373 - 23855271
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| ||||||||||||||||||||||||| ||||||||||| | |||||| |||||||| |||| |||||| || |||||||||    
T  23855373 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttattaattaaattttgcaacattcgaacaattattagataaagttcgtgttactaaa 23855274  T
Q  686 gag 688  Q
    |||    
T  23855273 gag 23855271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 618 - 685
Target Start/End: Original strand, 37233061 - 37233128
Alignment:
Q  618 aagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||    
T  37233061 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 37233128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 610 - 673
Target Start/End: Complemental strand, 40402088 - 40402025
Alignment:
Q  610 actaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtc 673  Q
    ||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  40402088 actaaataaagaaaaatgttactaattaaatttagttacgtttgaacaattgttaggtaaagtc 40402025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 620 - 685
Target Start/End: Original strand, 42076078 - 42076143
Alignment:
Q  620 gaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||    
T  42076078 gaaaattgttactaattaaatttagtaacatttgaacaattgttagataaagtccatgttactaaa 42076143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 576 - 651
Target Start/End: Complemental strand, 11833354 - 11833279
Alignment:
Q  576 cataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatt 651  Q
    |||||||||||||||| |||| || | |||||||||||||||| ||||||||||| |||||| || ||| ||||||    
T  11833354 cataattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagcaacatt 11833279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 755 - 843
Target Start/End: Complemental strand, 23616749 - 23616663
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattgcctag 843  Q
    ||||||||| |||| |||||||||| ||| ||| ||||||||||||||  |||| ||| ||||||||||||||| | ||||||| ||||    
T  23616749 aacactttttgtatcactagtaacaataaaaaagtgttacatttataa--tttttgagaagttgtaaaaagtgtcgcaaaattgtctag 23616663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 755 - 843
Target Start/End: Complemental strand, 23848146 - 23848060
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattgcctag 843  Q
    ||||||||| |||| |||||||||| ||| ||| ||||||||||||||  |||| ||| ||||||||||||||| | ||||||| ||||    
T  23848146 aacactttttgtatcactagtaacaataaaaaagtgttacatttataa--tttttgagaagttgtaaaaagtgtcgcaaaattgtctag 23848060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 582 - 630
Target Start/End: Original strand, 28080093 - 28080141
Alignment:
Q  582 tgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgtta 630  Q
    |||||||||| |||| ||||||||||||| |||||||||||||||||||    
T  28080093 tgagatttagtaacatttaaaaaatgtaattaaatcaagaaaaatgtta 28080141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 582 - 684
Target Start/End: Original strand, 4376581 - 4376683
Alignment:
Q  582 tgagatttagaaacaattaaaaaatgtaactaaatcaaga-aaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagtta 680  Q
    |||||||| | |||| || ||||||||||||||||||| |  ||||||||||| ||| || | |||||||||| | || |||||||||||||||| ||||    
T  4376581 tgagattttgtaacacttgaaaaatgtaactaaatcaaaaccaaatgttactatttagatcttgtaacatttg-ataaatgttaggtaaagtccgtgtta 4376679  T
Q  681 ctaa 684  Q
    ||||    
T  4376680 ctaa 4376683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 567 - 685
Target Start/End: Original strand, 15160365 - 15160483
Alignment:
Q  567 gcactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaa-aaatgttactaattaaatttagtaacatttgaacaattgttag 665  Q
    ||||| |||||||  |||||||||| |||| || |||| ||||| |||||||| || ||||||||||| |||||| | |||||||||| | || ||||||    
T  15160365 gcactacaacatatatgagatttagtaacacttcaaaattgtaaataaatcaaaaacaaatgttactatttaaatcttgtaacatttg-ataaatgttag 15160463  T
Q  666 gtaaagtccgagttactaaa 685  Q
    |||||| ||  |||||||||    
T  15160464 gtaaagcccatgttactaaa 15160483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 17535349 - 17535416
Alignment:
Q  567 gcactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaa 634  Q
    ||||| ||||| ||||||||| ||| |||  || ||||||||||||||||||||||||||||| ||||    
T  17535349 gcactacaacaaaattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgttgctaa 17535416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 568 - 688
Target Start/End: Original strand, 31571008 - 31571132
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacattt----gaacaattgtt 663  Q
    |||| |||||||||||| || ||| |||| || |||| ||| | |||| |||||||||||||||| |||||| |||||||||| |    | |||||||||    
T  31571008 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacatatatatgtacaattgtt 31571107  T
Q  664 aggtaaagtccgagttactaaagag 688  Q
    |||||||  ||  ||||||||||||    
T  31571108 aggtaaaacccatgttactaaagag 31571132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 568 - 685
Target Start/End: Complemental strand, 30655297 - 30655180
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaa-aaatgttactaattaaatttagtaacatttgaacaattgttagg 666  Q
    |||| |||||||  |||||||||| |||| || |||| |||||||||||||| || ||||||||||| ||| || | |||||||||| | || |||||||    
T  30655297 cactacaacatatatgagatttagtaacacttcaaaattgtaactaaatcaaaaacaaatgttactatttagatcttgtaacatttg-ataaatgttagg 30655199  T
Q  667 taaagtccgagttactaaa 685  Q
    ||||| | | |||||||||    
T  30655198 taaagccggtgttactaaa 30655180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 568 - 633
Target Start/End: Complemental strand, 12004630 - 12004566
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttacta 633  Q
    |||| |||||||||||| |||||| ||||||| |||  | ||||||||||||||||||||||||||    
T  12004630 cactacaacataattgaaatttagtaacaattgaaat-tctaactaaatcaagaaaaatgttacta 12004566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 6080029 - 6080097
Alignment:
Q  121 atgtacttataagtggagataaacctcacctaagaagccggttttgtaggattgtgtaggtcccaacca 189  Q
    |||||| ||||||||  |||||  ||||||| | ||||||||||||||||||||||| |||| ||||||    
T  6080029 atgtacctataagtgaggataattctcacctcataagccggttttgtaggattgtgttggtctcaacca 6080097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 584 - 685
Target Start/End: Complemental strand, 19615137 - 19615036
Alignment:
Q  584 agatttagaaacaattaaaaaatgtaactaaatcaagaa-aaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttact 682  Q
    |||||||| |||| || |||| |||||||||||||| || || |||||||| ||| || | |||||||||| |||| |||||||||||| ||  ||||||    
T  19615137 agatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttg-acaaatgttaggtaaagcccatgttact 19615039  T
Q  683 aaa 685  Q
    |||    
T  19615038 aaa 19615036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 755 - 838
Target Start/End: Complemental strand, 5078999 - 5078919
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattg 838  Q
    ||||||||| |||| ||| |||||| ||| ||| ||||||||||||||   ||| ||| ||||||||||||||| | |||||||    
T  5078999 aacactttttgtatcacttgtaacaataaaaaagtgttacatttataa---ttttgaggagttgtaaaaagtgtcgcaaaattg 5078919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 683
Target Start/End: Original strand, 11507342 - 11507438
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttacta 683  Q
    |||||| |||| ||||||| ||||||||||| || ||||||||||||| ||| ||   ||||| |||| | || |||||||||||| ||| |||||||    
T  11507342 atttagtaacacttaaaaattgtaactaaataaaaaaaaatgttactatttagatcatgtaacttttg-ataaatgttaggtaaagcccgtgttacta 11507438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 683
Target Start/End: Original strand, 11514714 - 11514810
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttacta 683  Q
    |||||| |||| ||||||| ||||||||||| || ||||||||||||| ||| ||   ||||| |||| | || |||||||||||| ||| |||||||    
T  11514714 atttagtaacacttaaaaattgtaactaaataaaaaaaaatgttactatttagatcatgtaacttttg-ataaatgttaggtaaagcccgtgttacta 11514810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 683
Target Start/End: Original strand, 11522115 - 11522211
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttacta 683  Q
    |||||| |||| ||||||| ||||||||||| || ||||||||||||| ||| ||   ||||| |||| | || |||||||||||| ||| |||||||    
T  11522115 atttagtaacacttaaaaattgtaactaaataaaaaaaaatgttactatttagatcatgtaacttttg-ataaatgttaggtaaagcccgtgttacta 11522211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 683
Target Start/End: Original strand, 11529528 - 11529624
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttacta 683  Q
    |||||| |||| ||||||| ||||||||||| || ||||||||||||| ||| ||   ||||| |||| | || |||||||||||| ||| |||||||    
T  11529528 atttagtaacacttaaaaattgtaactaaataaaaaaaaatgttactatttagatcatgtaacttttg-ataaatgttaggtaaagcccgtgttacta 11529624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 8e-33; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 565 - 685
Target Start/End: Original strand, 6403569 - 6403689
Alignment:
Q  565 ttgcactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgtta 664  Q
    ||||||| |||||| ||| |||||||| ||||||| |||  ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  6403569 ttgcactacaacatgattaagatttagtaacaattgaaatttgtaactaaattaagaaaaatgttactaattaaatttagtaacatttgagcaattgtta 6403668  T
Q  665 ggtaaagtccgagttactaaa 685  Q
    ||||||| ||| |||| ||||    
T  6403669 ggtaaagcccgtgttattaaa 6403689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 568 - 685
Target Start/End: Original strand, 29553608 - 29553725
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    |||| |||||| |||||||||||| ||||||| |||| |||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |    
T  29553608 cactacaacatgattgagatttagtaacaattgaaaattgtaaccaaatcaagaaaaatgttactaattaaatttagcaacatttgagcaattgttagtt 29553707  T
Q  668 aaagtccgagttactaaa 685  Q
    ||||  || |||||||||    
T  29553708 aaagcgcgtgttactaaa 29553725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 588 - 686
Target Start/End: Complemental strand, 28249176 - 28249078
Alignment:
Q  588 ttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaag 686  Q
    |||| |||| || |||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||| ||||||||||    
T  28249176 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaag 28249078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 568 - 670
Target Start/End: Original strand, 31347328 - 31347430
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    ||||||||||| ||||| |||||| ||||||| |||| |||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||| |    
T  31347328 cactgcaacatgattgaaatttagtaacaattgaaaattgtaaccaaatcaagaaaaatgctactaattaaatttagtaacatttgatcaattgttagat 31347427  T
Q  668 aaa 670  Q
    |||    
T  31347428 aaa 31347430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 586 - 687
Target Start/End: Complemental strand, 17634574 - 17634473
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| ||| |||||||||    
T  17634574 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttaataacacttgaacaattgataggtaaagcccgtgttactaaa 17634475  T
Q  686 ga 687  Q
    ||    
T  17634474 ga 17634473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 601 - 686
Target Start/End: Complemental strand, 45356200 - 45356115
Alignment:
Q  601 aaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaag 686  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||| ||||||||||    
T  45356200 aaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaag 45356115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 568 - 688
Target Start/End: Complemental strand, 6801951 - 6801831
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    |||| |||||||  |||||||||| |||| || |||| | | |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  6801951 cactacaacatagatgagatttagtaacacttgaaaactattactaaatcaataaaaatgttactaattaaatttagtaacagttgaacaattgttaggt 6801852  T
Q  668 aaagtccgagttactaaagag 688  Q
    |||| ||  ||||||||||||    
T  6801851 aaagcccctgttactaaagag 6801831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 568 - 670
Target Start/End: Complemental strand, 5651066 - 5650964
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    |||||||||||||||||| || || |||| || |||| | | ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  5651066 cactgcaacataattgagtttcagtaacacttgaaaactattactaaatcaagaaaaatgttactaattcaatttagcaacatttgaacaattgttaggt 5650967  T
Q  668 aaa 670  Q
    |||    
T  5650966 aaa 5650964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 586 - 688
Target Start/End: Complemental strand, 19370013 - 19369911
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| ||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||| ||||||||| |||||||||    
T  19370013 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaa 19369914  T
Q  686 gag 688  Q
    |||    
T  19369913 gag 19369911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 586 - 688
Target Start/End: Original strand, 19448445 - 19448547
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| ||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||| ||||||||| |||||||||    
T  19448445 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaa 19448544  T
Q  686 gag 688  Q
    |||    
T  19448545 gag 19448547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 586 - 688
Target Start/End: Complemental strand, 19532631 - 19532529
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| ||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||| ||||||||| |||||||||    
T  19532631 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaa 19532532  T
Q  686 gag 688  Q
    |||    
T  19532531 gag 19532529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 586 - 688
Target Start/End: Original strand, 5528740 - 5528842
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| ||||||||||||||||||||||||||||||||||||||| |||| |  |||||||||||| ||||||| | |||||||||    
T  5528740 atttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacactcaaacaattgttagataaagtctgtgttactaaa 5528839  T
Q  686 gag 688  Q
    |||    
T  5528840 gag 5528842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 588 - 670
Target Start/End: Original strand, 25638806 - 25638888
Alignment:
Q  588 ttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaa 670  Q
    |||| |||| || |||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  25638806 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaa 25638888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 601 - 671
Target Start/End: Original strand, 29345443 - 29345513
Alignment:
Q  601 aaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaag 671  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  29345443 aaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacctttgaacaattgttaggtaaag 29345513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 586 - 687
Target Start/End: Original strand, 25637641 - 25637742
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| ||||||||||| ||||||| ||||||||||||||||||| |||| | ||||||||||||||||||| ||| |||||||||    
T  25637641 atttagtaacacttgaaaattgtaactaaattaagaaaactgttactaattaaatttagcaacactcgaacaattgttaggtaaagcccgtgttactaaa 25637740  T
Q  686 ga 687  Q
    ||    
T  25637741 ga 25637742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 586 - 688
Target Start/End: Original strand, 18766914 - 18767016
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| ||||||||||||||||||||| ||| ||||||||||| | |||| |  ||||||||||||||||||| || |||||||||    
T  18766914 atttagcaacacttgaaaattgtaactaaatcaagaaaaatattattaattaaattttgcaacactcaaacaattgttaggtaaagtacgtgttactaaa 18767013  T
Q  686 gag 688  Q
    |||    
T  18767014 gag 18767016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 573 - 688
Target Start/End: Original strand, 5000663 - 5000778
Alignment:
Q  573 caacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagt 672  Q
    ||||||||||||||| |||  |||||| |||| ||| |||| ||||  |||| ||||||||||||||||||||||||||||| |||| ||||||| ||      
T  5000663 caacataattgagatctagttacaattgaaaattgttactacatcatcaaaattgttactaattaaatttagtaacatttgagcaatagttaggtgaaac 5000762  T
Q  673 ccgagttactaaagag 688  Q
    | | ||||||||||||    
T  5000763 ctgtgttactaaagag 5000778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 581 - 671
Target Start/End: Complemental strand, 31369214 - 31369124
Alignment:
Q  581 ttgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaag 671  Q
    ||||||||||  |||| || ||||||| |||||||||| || |||||||||||||||| |||||| |||||| ||||| ||||| ||||||    
T  31369214 ttgagatttaataacatttgaaaaatgaaactaaatcacgataaatgttactaattaagtttagtgacatttaaacaaatgttatgtaaag 31369124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 755 - 846
Target Start/End: Complemental strand, 19369845 - 19369756
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattgcctagact 846  Q
    ||||||||| |||| |||||||||| ||| ||| ||||||||||||||  |||| ||| ||||||||||||||| | ||||||| |||||||    
T  19369845 aacactttttgtatcactagtaacaataaaaaagtgttacatttataa--tttttgagaagttgtaaaaagtgtcgcaaaattgtctagact 19369756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 582 - 685
Target Start/End: Complemental strand, 19371376 - 19371273
Alignment:
Q  582 tgagatttagaaacaattaaaaaatgtaactaaatcaagaa-aaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagtta 680  Q
    |||||||||| ||||||| |||| |||||||||||||| || ||||||||||| ||| || | |||||||||| |||| |||||||||||| | | ||||    
T  19371376 tgagatttagtaacaattcaaaattgtaactaaatcaaaaataaatgttactatttagatcttgtaacatttg-acaaatgttaggtaaagactgtgtta 19371278  T
Q  681 ctaaa 685  Q
    |||||    
T  19371277 ctaaa 19371273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 755 - 846
Target Start/End: Original strand, 19448613 - 19448702
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattgcctagact 846  Q
    ||||||||| |||| |||||||||| ||| ||| ||||||||||||||  |||| ||| ||||||||||||||| | ||||||| |||||||    
T  19448613 aacactttttgtatcactagtaacaataaaaaagtgttacatttataa--tttttgagaagttgtaaaaagtgtcgcaaaattgtctagact 19448702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 755 - 846
Target Start/End: Complemental strand, 19532463 - 19532374
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattgcctagact 846  Q
    ||||||||| |||| |||||||||| ||| ||| ||||||||||||||  |||| ||| ||||||||||||||| | ||||||| |||||||    
T  19532463 aacactttttgtatcactagtaacaataaaaaagtgttacatttataa--tttttgagaagttgtaaaaagtgtcgcaaaattgtctagact 19532374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 755 - 846
Target Start/End: Original strand, 25637808 - 25637897
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattgcctagact 846  Q
    ||||||||| |||| |||||||||| || |||| ||||||||||||||  |||| ||| ||||||||||||||| | ||||||| |||||||    
T  25637808 aacactttttgtatcactagtaacaatactaaagtgttacatttataa--tttttgagaagttgtaaaaagtgtcgcaaaattgtctagact 25637897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 622 - 688
Target Start/End: Original strand, 6223434 - 6223500
Alignment:
Q  622 aaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaagag 688  Q
    |||| |||||| |||||||||||||||||||| | |||||||||||||||  || ||||||||||||    
T  6223434 aaaacgttactgattaaatttagtaacatttgtaaaattgttaggtaaagcgcgtgttactaaagag 6223500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 610 - 688
Target Start/End: Original strand, 14997642 - 14997720
Alignment:
Q  610 actaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaagag 688  Q
    ||||| |||||||||||||||||  ||||| ||||||||||||| | ||||||||||||||  ||  ||||||||||||    
T  14997642 actaattcaagaaaaatgttactggttaaaattagtaacatttgtagaattgttaggtaaaacccatgttactaaagag 14997720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 584 - 685
Target Start/End: Complemental strand, 19341526 - 19341425
Alignment:
Q  584 agatttagaaacaattaaaaaatgtaactaaatcaagaa-aaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttact 682  Q
    |||||||| ||||||| |||| |||||||||||||| || ||||||||||| ||| || | | |||||||| |||| |||||||||||| ||| ||||||    
T  19341526 agatttagtaacaattcaaaattgtaactaaatcaaaaataaatgttactatttagatcttgaaacatttg-acaaatgttaggtaaagaccgtgttact 19341428  T
Q  683 aaa 685  Q
    |||    
T  19341427 aaa 19341425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 568 - 685
Target Start/End: Original strand, 26173781 - 26173896
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    |||| ||||| || |||||||||| |||| ||||||||| | ||||||| ||||||  |||||||| ||| |||||||||| | || | || ||||||||    
T  26173781 cactacaacaaaaatgagatttagtaacacttaaaaaatattactaaataaagaaa--tgttactatttatatttagtaacttctgtataaatgttaggt 26173878  T
Q  668 aaagtccgagttactaaa 685  Q
    |||| |||  ||||||||    
T  26173879 aaagcccgtattactaaa 26173896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 755 - 846
Target Start/End: Original strand, 5528908 - 5528997
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattgcctagact 846  Q
    ||||||||| |||| | |||||||| ||| ||| ||||||| |||||| ||||  ||| ||||||||||||||| | ||||||| |||||||    
T  5528908 aacactttttgtatcattagtaacaataaaaaagtgttacaattataattttt--gagaagttgtaaaaagtgtcgcaaaattgtctagact 5528997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 755 - 845
Target Start/End: Original strand, 18767082 - 18767171
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaa-tgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattgcctagac 845  Q
    |||| |||| |||| |||||||||| ||| |||| |||||||||||||| ||||  ||| ||||||||||||| ||| ||||||| ||||||    
T  18767082 aacattttttgtatcactagtaacaataaaaaaagtgttacatttataattttt--gagaagttgtaaaaagtattgcaaaattgtctagac 18767171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 755 - 838
Target Start/End: Original strand, 25638972 - 25639053
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattg 838  Q
    ||||||||| |||| ||| |||||| ||| ||| ||||||||||||||  |||| ||| ||||||||||||||| | |||||||    
T  25638972 aacactttttgtatcacttgtaacaataaaaaagtgttacatttataa--tttttgaggagttgtaaaaagtgtcgcaaaattg 25639053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 755 - 838
Target Start/End: Complemental strand, 28249014 - 28248933
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattg 838  Q
    ||||||||| |||| ||| |||||| ||| ||| ||||||||||||||  |||| ||| ||||||||||||||| | |||||||    
T  28249014 aacactttttgtatcacttgtaacaataaaaaagtgttacatttataa--tttttgaggagttgtaaaaagtgtcgcaaaattg 28248933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 755 - 838
Target Start/End: Complemental strand, 45356047 - 45355966
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattg 838  Q
    ||||||||| |||| ||| |||||| ||| ||| ||||||||||||||  |||| ||| ||||||||||||||| | |||||||    
T  45356047 aacactttttgtatcacttgtaacaataaaaaagtgttacatttataa--tttttgaggagttgtaaaaagtgtcgcaaaattg 45355966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 582 - 654
Target Start/End: Original strand, 29386473 - 29386547
Alignment:
Q  582 tgagatttagaaacaattaaaaaatgtaactaaat--caagaaaaatgttactaattaaatttagtaacatttga 654  Q
    |||||||||| |||| ||||||||||||| |||||   || ||||||||||||| ||| ||||||||| ||||||    
T  29386473 tgagatttagtaacatttaaaaaatgtaagtaaataaaaaaaaaaatgttactatttagatttagtaatatttga 29386547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 601 - 685
Target Start/End: Original strand, 8833509 - 8833593
Alignment:
Q  601 aaaaatgtaactaaatcaaga-aaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    ||||||||||||||||||| |  ||||||||||| ||| || | |||||||||| | || |||||||| ||||||| |||||||||    
T  8833509 aaaaatgtaactaaatcaaaaccaaatgttactatttagatcttgtaacatttg-ataaatgttaggtgaagtccgtgttactaaa 8833593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 1e-31; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 588 - 686
Target Start/End: Original strand, 16734804 - 16734902
Alignment:
Q  588 ttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaag 686  Q
    |||| |||| || |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||    
T  16734804 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacatttgaacaattgttaggtaaagcccgtgttactaaag 16734902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 568 - 688
Target Start/End: Complemental strand, 23264619 - 23264497
Alignment:
Q  568 cactgcaacataattgagatttagaaacaat--taaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttag 665  Q
    |||| ||||||||||||||| ||| || |||  | |||| ||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  23264619 cactacaacataattgagatctagtaagaatattgaaaattgttactaaatcaagaaaattgttactaattaaatttagtaacattcgaacaattgttag 23264520  T
Q  666 gtaaagtccgagttactaaagag 688  Q
    ||||| |||| ||||||||||||    
T  23264519 gtaaaatccgtgttactaaagag 23264497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 568 - 671
Target Start/End: Complemental strand, 29668038 - 29667933
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaa--gaaaaatgttactaattaaatttagtaacatttgaacaattgttag 665  Q
    |||| ||||||||||||||| | | ||||||| |||| |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  29668038 cactacaacataattgagatcttgtaacaattgaaaattgtaacgaaatcaaaagaaaaatgttactaattaaatttagtaacatttgaacaattgttag 29667939  T
Q  666 gtaaag 671  Q
    ||||||    
T  29667938 gtaaag 29667933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 588 - 685
Target Start/End: Original strand, 15361714 - 15361811
Alignment:
Q  588 ttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | | |||||||||    
T  15361714 ttagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaa 15361811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 580 - 688
Target Start/End: Original strand, 34374816 - 34374926
Alignment:
Q  580 attgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaac--aattgttaggtaaagtccgag 677  Q
    ||||||||| || |||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||  |||||||||| ||| || | |    
T  34374816 attgagattaagtaacaattaaaaaatgtaattaaatcaagaaaaatgttactaattatattttgtaacatttgaacaaaattgttaggcaaaatctgtg 34374915  T
Q  678 ttactaaagag 688  Q
    |||||||||||    
T  34374916 ttactaaagag 34374926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 586 - 688
Target Start/End: Original strand, 6684091 - 6684192
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||  |||||||||    
T  6684091 atttagtaacacttaaaaattgtaacttaatcaagaaaaatgttactaattaaatttagtaacactcgaac-attgttaggtaaagtccatgttactaaa 6684189  T
Q  686 gag 688  Q
    |||    
T  6684190 gag 6684192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 588 - 686
Target Start/End: Complemental strand, 11936868 - 11936770
Alignment:
Q  588 ttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaag 686  Q
    |||| |||| || |||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||| ||||||||||    
T  11936868 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaag 11936770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 586 - 688
Target Start/End: Original strand, 12591830 - 12591932
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| ||||||||||||||||||||||||| |||||||||||||||||  | ||||||||||||||||||| ||| |||||||||    
T  12591830 atttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacgctcgaacaattgttaggtaaagcccgtgttactaaa 12591929  T
Q  686 gag 688  Q
    |||    
T  12591930 gag 12591932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 586 - 688
Target Start/End: Complemental strand, 14669449 - 14669347
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| ||||||||||||||||||||||||||||||||||||| | |||| | ||| ||||||||||||||||||| |||||||||    
T  14669449 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaataattgttaggtaaagtccgtgttactaaa 14669350  T
Q  686 gag 688  Q
    |||    
T  14669349 gag 14669347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 568 - 685
Target Start/End: Complemental strand, 4485686 - 4485569
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    |||| |||||||||| |||| ||| | || || ||||||| |||||||||||| |||||| ||||||||||||||||||| ||||||| |||||||||||    
T  4485686 cactacaacataattaagatctagtatcagttgaaaaatgcaactaaatcaaggaaaatggtactaattaaatttagtaatatttgaataattgttaggt 4485587  T
Q  668 aaagtccgagttactaaa 685  Q
    |||||||| |||| ||||    
T  4485586 aaagtccgtgttattaaa 4485569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 601 - 686
Target Start/End: Complemental strand, 11948835 - 11948750
Alignment:
Q  601 aaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaag 686  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||| ||||||||||    
T  11948835 aaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaag 11948750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 586 - 688
Target Start/End: Complemental strand, 17719826 - 17719724
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| ||||||||||||||||||||||||||||||||| ||| | |||| | ||||||||||||| ||||||||| |||||||||    
T  17719826 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaatttttgcaacactcgaacaattgttagataaagtccgtgttactaaa 17719727  T
Q  686 gag 688  Q
    |||    
T  17719726 gag 17719724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 573 - 666
Target Start/End: Complemental strand, 9631271 - 9631178
Alignment:
Q  573 caacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttagg 666  Q
    ||||||||||||||||||| |||| || |||| | | ||||||||||||| || |||||||| |||||||||||||||||||||||||||||||    
T  9631271 caacataattgagatttagtaacacttgaaaactattactaaatcaagaagaacgttactaagtaaatttagtaacatttgaacaattgttagg 9631178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 573 - 671
Target Start/End: Complemental strand, 23904468 - 23904370
Alignment:
Q  573 caacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaag 671  Q
    ||||||||||||||| ||| |||| || |||| ||  ||||||| |||||||| |||||||| | ||||||||||||||||||||||||||||||||||    
T  23904468 caacataattgagatctagtaacacttgaaaattgctactaaatgaagaaaaaagttactaaatcaatttagtaacatttgaacaattgttaggtaaag 23904370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 586 - 674
Target Start/End: Original strand, 15690435 - 15690523
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtcc 674  Q
    |||||| |||| || |||| |||||||||||||||||||||||||||||||||||||||| ||| |  |||||||||||| ||||||||    
T  15690435 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtgacactcaaacaattgttagctaaagtcc 15690523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 565 - 670
Target Start/End: Original strand, 1942545 - 1942650
Alignment:
Q  565 ttgcactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgtta 664  Q
    ||||||| |||||||||| |||||| | |||| || | || ||||||||||||||||||||| ||||| || ||||||| |||||||||| |||||| ||    
T  1942545 ttgcactacaacataattaagatttggtaacatttgataattgtaactaaatcaagaaaaatattactgataaaatttaataacatttgagcaattgcta 1942644  T
Q  665 ggtaaa 670  Q
    ||||||    
T  1942645 ggtaaa 1942650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 573 - 649
Target Start/End: Complemental strand, 6673734 - 6673659
Alignment:
Q  573 caacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaaca 649  Q
    |||||||||| |||||||| |||| || ||||||||||||||||||||||||||||||||||  |||||||||||||    
T  6673734 caacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaa-aaaatttagtaaca 6673659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 600 - 670
Target Start/End: Complemental strand, 10935870 - 10935800
Alignment:
Q  600 aaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaa 670  Q
    ||||||| | ||||||||| |||||||||||||||||| ||  ||||||||||||||||||||||||||||    
T  10935870 aaaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 10935800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 586 - 685
Target Start/End: Original strand, 2941002 - 2941102
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaa-atgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaa 684  Q
    |||||| |||| ||||||| |||||| ||||||| |||| |||||||||||||  ||||||||||||||| ||| |||||||||||||  | ||||||||    
T  2941002 atttaggaacatttaaaaattgtaacaaaatcaaaaaaagatgttactaattatgtttagtaacatttgagcaaatgttaggtaaagtttgtgttactaa 2941101  T
Q  685 a 685  Q
    |    
T  2941102 a 2941102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 608 - 685
Target Start/End: Original strand, 10070674 - 10070751
Alignment:
Q  608 taactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||||||||| |||| |||||||||||||||||| ||||| |  || |||||||| |||||||||| |||||||||    
T  10070674 taactaaatcaacaaaattgttactaattaaatttaataacactcaaataattgttacgtaaagtccgtgttactaaa 10070751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 568 - 671
Target Start/End: Complemental strand, 6346979 - 6346876
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaa-aaatgttactaattaaatttagtaacatttgaacaattgttagg 666  Q
    ||||||||||||  |||||||||| ||||  | |||| |||||||||||||| || ||||||||||| |||||||| |||||||||| | || |||||||    
T  6346979 cactgcaacatatatgagatttagtaacacattaaaattgtaactaaatcaaaaataaatgttactatttaaattttgtaacatttg-ataaatgttagg 6346881  T
Q  667 taaag 671  Q
    |||||    
T  6346880 taaag 6346876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 581 - 673
Target Start/End: Complemental strand, 27970025 - 27969933
Alignment:
Q  581 ttgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtc 673  Q
    ||||| ||||| |||| || |||| |||||| ||| ||||||| ||||||||| || ||||||| ||||||| ||||| ||||||||||||||    
T  27970025 ttgaggtttagtaacatttgaaaattgtaaccaaagcaagaaatatgttactatttcaatttagcaacatttcaacaaatgttaggtaaagtc 27969933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 610 - 688
Target Start/End: Complemental strand, 30481307 - 30481229
Alignment:
Q  610 actaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaagag 688  Q
    |||||||||||||||||||| |||||||||| |||||||| |||||||| | |||| |||||  |  ||||||||||||    
T  30481307 actaaatcaagaaaaatgttgctaattaaatctagtaacaattgaacaaattttagataaagatcatgttactaaagag 30481229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 755 - 838
Target Start/End: Complemental strand, 11936702 - 11936621
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattg 838  Q
    ||||||||| |||| ||| |||||| ||| ||| ||||||||||||||  |||| ||| ||||||||||||||||| |||||||    
T  11936702 aacactttttgtatcacttgtaacaataaaaaagtgttacatttataa--tttttgaggagttgtaaaaagtgttgcaaaattg 11936621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 755 - 838
Target Start/End: Complemental strand, 11948682 - 11948601
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattg 838  Q
    ||||||||| |||| ||| |||||| ||| ||| ||||||||||||||  |||| ||| ||||||||||||||||| |||||||    
T  11948682 aacactttttgtatcacttgtaacaataaaaaagtgttacatttataa--tttttgaggagttgtaaaaagtgttgcaaaattg 11948601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 755 - 838
Target Start/End: Complemental strand, 17719658 - 17719577
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattg 838  Q
    ||||||||| |||| |||||||||| ||| ||| ||||||||||||||  |||| ||| ||||||||||||||| | |||||||    
T  17719658 aacactttttgtatcactagtaacaataaaaaagtgttacatttataa--tttttgagaagttgtaaaaagtgtcgcaaaattg 17719577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 584 - 685
Target Start/End: Complemental strand, 7601439 - 7601338
Alignment:
Q  584 agatttagaaacaattaaaaaatgtaactaaatcaagaaaaa-tgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttact 682  Q
    |||||||| |||| || |||| ||||| |||||||| || || |||||||| ||| || | ||||||||||| ||| |||||||||||||||| ||||||    
T  7601439 agatttagtaacacttcaaaattgtaattaaatcaaaaacaactgttactatttagatcttgtaacatttga-caaatgttaggtaaagtccgtgttact 7601341  T
Q  683 aaa 685  Q
    |||    
T  7601340 aaa 7601338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 573 - 670
Target Start/End: Original strand, 9236013 - 9236110
Alignment:
Q  573 caacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaa-aaatgttactaattaaatttagtaacatttgaacaattgttaggtaaa 670  Q
    |||||||  |||||||||| |||| || ||||  ||||||||||||| || |||| |||||| |||||||| |||||||||| |||| |||||||||||    
T  9236013 caacatatatgagatttagtaacacttcaaaatcgtaactaaatcaaaaacaaatattactatttaaattttgtaacatttg-acaaatgttaggtaaa 9236110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 584 - 685
Target Start/End: Original strand, 14003868 - 14003969
Alignment:
Q  584 agatttagaaacaattaaaaaatgtaactaaatcaagaa-aaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttact 682  Q
    |||||||| |||| || |||| |||||||||||||| || || |||||||| ||| || | |||||||||| |||| |||||||||||| ||| ||||||    
T  14003868 agatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttg-acaaatgttaggtaaagcccgtgttact 14003966  T
Q  683 aaa 685  Q
    |||    
T  14003967 aaa 14003969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 585 - 685
Target Start/End: Complemental strand, 2668557 - 2668457
Alignment:
Q  585 gatttagaaacaattaaaaaatgtaactaaatcaagaaaaa-tgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttacta 683  Q
    ||||||| |||| || |||| |||||||||||||| || || |||||||| ||| || | ||||||||||| ||| |||||||||||| ||| |||||||    
T  2668557 gatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttga-caaatgttaggtaaagcccgtgttacta 2668459  T
Q  684 aa 685  Q
    ||    
T  2668458 aa 2668457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 577 - 673
Target Start/End: Original strand, 4591138 - 4591234
Alignment:
Q  577 ataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtc 673  Q
    |||||| | |||||| |||| || |||| | | ||||||||||||||||||||||  |||||| | | |||| |||| |||||||||||||| ||||    
T  4591138 ataattaacatttagtaacatttgaaaattattactaaatcaagaaaaatgttaccgattaaaatcaataacctttgtacaattgttaggtatagtc 4591234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 755 - 846
Target Start/End: Complemental strand, 14669281 - 14669192
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattgcctagact 846  Q
    ||||||||| |||| |||||||||| ||| ||| ||||||||||||||  |||| ||| ||| ||||||||||| | ||||||  |||||||    
T  14669281 aacactttttgtatcactagtaacaataaaaaagtgttacatttataa--tttttgagaagtcgtaaaaagtgtcgcaaaattatctagact 14669192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 755 - 805
Target Start/End: Original strand, 34374994 - 34375044
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactt 805  Q
    ||||||||| ||||||||  ||||| ||||||||||| |||||||||||||    
T  34374994 aacactttttgtattactgataacactaataaaatgtcacatttataactt 34375044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 601 - 685
Target Start/End: Original strand, 2567453 - 2567537
Alignment:
Q  601 aaaaatgtaactaaatcaagaa-aaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||| |||||||||||||| || ||||||||||| ||| || | |||||||||||  ||| ||| ||||||||||| |||||||||    
T  2567453 aaaattgtaactaaatcaaaaacaaatgttactatttagatcttgtaacatttgataaat-gtttggtaaagtccgtgttactaaa 2567537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 758 - 838
Target Start/End: Original strand, 15361883 - 15361961
Alignment:
Q  758 acttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattg 838  Q
    |||||| |||| ||| |||||| ||| ||| ||||||||||||||  |||| ||| ||||||||||||||| | |||||||    
T  15361883 actttttgtatcacttgtaacaataaaaaagtgttacatttataa--tttttgaggagttgtaaaaagtgtcgcaaaattg 15361961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 588 - 685
Target Start/End: Original strand, 6698 - 6795
Alignment:
Q  588 ttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | | |||||||||    
T  6698 ttagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaa 6795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 758 - 838
Target Start/End: Original strand, 6867 - 6945
Alignment:
Q  758 acttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattg 838  Q
    |||||| |||| ||| |||||| ||| ||| ||||||||||||||  |||| ||| ||||||||||||||| | |||||||    
T  6867 actttttgtatcacttgtaacaataaaaaagtgttacatttataa--tttttgaggagttgtaaaaagtgtcgcaaaattg 6945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 7e-27; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 586 - 688
Target Start/End: Complemental strand, 9242587 - 9242485
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| ||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||| ||||||||  |||||||||    
T  9242587 atttagcaacacttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgtaacacttgaacaattgttagataaagtccatgttactaaa 9242488  T
Q  686 gag 688  Q
    |||    
T  9242487 gag 9242485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 568 - 688
Target Start/End: Complemental strand, 26608660 - 26608540
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    |||| |||||||||||| || ||| |||| || |||| ||| |  |||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  26608660 cactacaacataattgacatctagtaacatttgaaaattgttatgaaatcaagaaaaatgttactgattaaatttagtaacatttgaacaattgttagat 26608561  T
Q  668 aaagtccgagttactaaagag 688  Q
    |||| ||  ||||||||||||    
T  26608560 aaagcccatgttactaaagag 26608540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 601 - 688
Target Start/End: Complemental strand, 26225066 - 26224979
Alignment:
Q  601 aaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaagag 688  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||| | | ||||||||||||    
T  26225066 aaaattgtaactaaatcaagaaaaatgatactaattaaatttagtaacacttgaacaattattaggtaaagccggtgttactaaagag 26224979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 577 - 688
Target Start/End: Original strand, 30089723 - 30089834
Alignment:
Q  577 ataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccga 676  Q
    |||||||| || ||| |||| || |||| ||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||| ||      
T  30089723 ataattgacatctagtaacacttgaaaactgttactaaatcaagaaaaatgttactgattatatttagtaacatttgaacaattgttaggaaaagcccat 30089822  T
Q  677 gttactaaagag 688  Q
    ||||||||||||    
T  30089823 gttactaaagag 30089834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 588 - 686
Target Start/End: Complemental strand, 4685504 - 4685406
Alignment:
Q  588 ttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaag 686  Q
    |||| |||| || |||| ||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||| |||  |||||||||    
T  4685504 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacacttgaacaattgttaggtaaagcccgtattactaaag 4685406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 586 - 687
Target Start/End: Original strand, 10022121 - 10022222
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| ||||||| |||| |||||||||||||  |||||||||||||||||| ||||||||||  ||||||||||||||||||||  || |||||||||    
T  10022121 atttagtaacaattgaaaattgtaactaaatcagaaaaaatgttactaattaagtttagtaacacatgaacaattgttaggtaaagctcgtgttactaaa 10022220  T
Q  686 ga 687  Q
    ||    
T  10022221 ga 10022222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 576 - 685
Target Start/End: Original strand, 3234314 - 3234424
Alignment:
Q  576 cataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaa-ttgttaggtaaagtcc 674  Q
    ||||||| |||||||| |||| || |||||||||||||||| || ||||||| |||||| | ||||||||||||||||| ||| || |||||||||||||    
T  3234314 cataattaagatttagtaacagttgaaaaatgtaactaaataaaaaaaaatggtactaaattaatttagtaacatttgaccaatttattaggtaaagtcc 3234413  T
Q  675 gagttactaaa 685  Q
    | |||||||||    
T  3234414 gtgttactaaa 3234424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 608 - 688
Target Start/End: Complemental strand, 26205496 - 26205416
Alignment:
Q  608 taactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaagag 688  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||   | ||||||||||||    
T  26205496 taactaaatcaagaaaaatgttactaattaaatttagtaacacttgaaaaattggtaggtaaagctggtgttactaaagag 26205416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 601 - 688
Target Start/End: Complemental strand, 20277448 - 20277361
Alignment:
Q  601 aaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaagag 688  Q
    |||| |||||||||||||| |||||| ||| ||||||||||||||||||||| ||||||||||||||||||  |  ||||||||||||    
T  20277448 aaaattgtaactaaatcaaaaaaaatattattaattaaatttagtaacatttaaacaattgttaggtaaagcacctgttactaaagag 20277361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 568 - 662
Target Start/End: Complemental strand, 26619223 - 26619130
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgt 662  Q
    |||| |||||||||||| || ||| |||| || |||  ||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  26619223 cactacaacataattgacatctagtaacacttgaaat-tgttactaaatcaagaaaaatgttactgattaaatttattaacatttgaacaattgt 26619130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 586 - 670
Target Start/End: Original strand, 16170268 - 16170352
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaa 670  Q
    |||||| |||| || |||| |||||| ||||||  |||| |||||||||||||||||||||||| || |||||||||||||||||    
T  16170268 atttagcaacacttgaaaattgtaaccaaatcacaaaaagtgttactaattaaatttagtaacacttaaacaattgttaggtaaa 16170352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 568 - 688
Target Start/End: Complemental strand, 26621212 - 26621092
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    |||| |||| |||| || || ||| |||| || |||| ||| ||||||| ||||||||||||||| ||||||||||| ||||||| |||||||||||| |    
T  26621212 cactacaacttaatggacatctagtaacacttgaaaattgttactaaattaagaaaaatgttactgattaaatttagcaacatttaaacaattgttagat 26621113  T
Q  668 aaagtccgagttactaaagag 688  Q
    |||  ||  ||||||||||||    
T  26621112 aaaagccatgttactaaagag 26621092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 612 - 671
Target Start/End: Original strand, 16086510 - 16086569
Alignment:
Q  612 taaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaag 671  Q
    |||||||  |||| |||||||||||||||||| ||||||||||| |||||||||||||||    
T  16086510 taaatcagaaaaactgttactaattaaatttaataacatttgaataattgttaggtaaag 16086569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 613 - 662
Target Start/End: Original strand, 3374325 - 3374374
Alignment:
Q  613 aaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgt 662  Q
    |||||||||||||||||| | |||||||| ||||||||||||||||||||    
T  3374325 aaatcaagaaaaatgttattgattaaattaagtaacatttgaacaattgt 3374374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 573 - 685
Target Start/End: Complemental strand, 7711473 - 7711361
Alignment:
Q  573 caacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaa-aaatgttactaattaaatttagtaacatttgaacaattgttaggtaaag 671  Q
    |||||||| |||||||||| |||| ||  ||| |||||||||||||| || ||||||||||| ||| || | |||||||||||  || ||||||||||||    
T  7711473 caacataaatgagatttagtaacacttctaaattgtaactaaatcaaaaacaaatgttactatttagatcttgtaacatttgatgaa-tgttaggtaaag 7711375  T
Q  672 tccgagttactaaa 685  Q
     ||| |||||||||    
T  7711374 cccgtgttactaaa 7711361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 573 - 685
Target Start/End: Original strand, 28312660 - 28312772
Alignment:
Q  573 caacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaa-aaatgttactaattaaatttagtaacatttgaacaattgttaggtaaag 671  Q
    |||||||  |||||||||| ||||||| |||| || ||||||||||| || ||||||||||| ||| || | |||||||||  |||| ||||||||||||    
T  28312660 caacatatatgagatttagtaacaattcaaaattgcaactaaatcaaaaacaaatgttactatttagatcttgtaacattt-cacaaatgttaggtaaag 28312758  T
Q  672 tccgagttactaaa 685  Q
     ||| |||||||||    
T  28312759 cccgtgttactaaa 28312772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 14803182 - 14803115
Alignment:
Q  567 gcactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaa 634  Q
    ||||| ||||| ||||||||| ||| |||  || ||||||||||||||||||||||||||||| ||||    
T  14803182 gcactacaacaaaattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgttgctaa 14803115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 567 - 634
Target Start/End: Complemental strand, 15250176 - 15250109
Alignment:
Q  567 gcactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaa 634  Q
    ||||| ||||| ||||||||| ||| |||  || ||||||||||||||||||||||||||||| ||||    
T  15250176 gcactacaacaaaattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgttgctaa 15250109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 573 - 688
Target Start/End: Original strand, 27135908 - 27136028
Alignment:
Q  573 caacataattgagatttagaaacaattaa-aaaatgtaactaaatc----aagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    ||||||||||||| ||||| |||| ||   ||||||| ||||||||    ||||||||||||| | |||| || || ||||||||||||||||||||| |    
T  27135908 caacataattgagttttagtaacatttttcaaaatgttactaaatcccgaaagaaaaatgttattgattatatctaataacatttgaacaattgttagat 27136007  T
Q  668 aaagtccgagttactaaagag 688  Q
    |||| | | ||||||||||||    
T  27136008 aaagcctgtgttactaaagag 27136028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 582 - 674
Target Start/End: Complemental strand, 2048513 - 2048423
Alignment:
Q  582 tgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtcc 674  Q
    |||||||| | |||| ||||||||||||| ||||| || ||||||||||||| |||  ||| |||||||||||  || |||||||||||||||    
T  2048513 tgagattttgtaacatttaaaaaatgtaagtaaat-aaaaaaaatgttactatttaggtttggtaacatttgattaa-tgttaggtaaagtcc 2048423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 755 - 838
Target Start/End: Complemental strand, 4685338 - 4685257
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattg 838  Q
    ||||||||| |||| ||| |||||| ||| ||| ||||||||||||||  |||| ||| ||||||||||||||| | |||||||    
T  4685338 aacactttttgtatcacttgtaacaataaaaaagtgttacatttataa--tttttgaggagttgtaaaaagtgtcgcaaaattg 4685257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 755 - 838
Target Start/End: Complemental strand, 20277293 - 20277212
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattg 838  Q
    ||||||||| |||| || | ||||  ||| |||||||||||||||||| ||||  ||| ||||||||||||||| |||||||||    
T  20277293 aacactttttgtatcaccaataacgataaaaaaatgttacatttataattttt--gagaagttgtaaaaagtgtcgtaaaattg 20277212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 671
Target Start/End: Complemental strand, 29932469 - 29932367
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 667  Q
    |||| ||||||||||| | ||||| |||| || |||||| | ||||||||  ||||||||||| | |||| |  || ||||||||| |||||||||||||    
T  29932469 cactacaacataattgcgttttagtaacatttgaaaaatattactaaatcgcgaaaaatgtta-tgattataactaataacatttggacaattgttaggt 29932371  T
Q  668 aaag 671  Q
    ||||    
T  29932370 aaag 29932367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 755 - 844
Target Start/End: Complemental strand, 9242419 - 9242332
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattgcctaga 844  Q
    ||||||||| |||| |||| ||||| | | ||| ||||||||||||||  |||| ||| ||||||||||||||| | ||||||| |||||    
T  9242419 aacactttttgtatcactattaacaatgaaaaagtgttacatttataa--tttttgagaagttgtaaaaagtgtcgcaaaattgtctaga 9242332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 755 - 838
Target Start/End: Original strand, 3374563 - 3374645
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaa-aagtgttgtaaaattg 838  Q
    ||||||||| |||| || ||||||| ||| ||| |||||||||||||| |||||  || ||||||||| |||||||| |||||||    
T  3374563 aacactttttgtatcaccagtaacaataaaaaagtgttacatttataatttttt--agaagttgtaaagaagtgttgcaaaattg 3374645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 606 - 687
Target Start/End: Original strand, 8241615 - 8241695
Alignment:
Q  606 tgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaaga 687  Q
    ||||||||||| ||||||| ||||||| ||| |||||| ||| ||||||||| ||||||| |||| |||  |||| ||||||    
T  8241615 tgtaactaaatgaagaaaa-tgttactgattgaatttaataatatttgaacagttgttagataaaatccatgttattaaaga 8241695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 586 - 688
Target Start/End: Complemental strand, 850 - 748
Alignment:
Q  586 atttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaa 685  Q
    |||||| |||| || |||| ||||||||||||||||||| ||||||||||||||||| | |||| | ||||||||||||| ||||||||  |||||||||    
T  850 atttagcaacacttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgcaacactcgaacaattgttagataaagtccatgttactaaa 751  T
Q  686 gag 688  Q
    |||    
T  750 gag 748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 755 - 844
Target Start/End: Complemental strand, 682 - 595
Alignment:
Q  755 aacacttttggtattactagtaacagtaataaaatgttacatttataactttttggagtagttgtaaaaagtgttgtaaaattgcctaga 844  Q
    ||||||||| |||| |||||||||| | | ||| ||||||||||||||  |||| ||||||||||||||||||| | ||||||| |||||    
T  682 aacactttttgtatcactagtaacaatgaaaaagtgttacatttataa--tttttgagtagttgtaaaaagtgtcgcaaaattgtctaga 595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 601 - 688
Target Start/End: Complemental strand, 40786 - 40699
Alignment:
Q  601 aaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtccgagttactaaagag 688  Q
    |||| ||||||||||||||||||| ||||||||||||||||| | |||| | ||||||||||||| ||||||||  ||||||||||||    
T  40786 aaaattgtaactaaatcaagaaaattgttactaattaaattttgcaacactcgaacaattgttagataaagtccatgttactaaagag 40699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 575 - 688
Target Start/End: Complemental strand, 446397 - 446284
Alignment:
Q  575 acataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtcc 674  Q
    ||||||||||||| ||| ||||||  || | |||||||||||||   ||| |||||| |||||||||| ||||||||||||||||||||||| |||||||    
T  446397 acataattgagatctagtaacaatcgaagattgtaactaaatcatacaaattgttaccaattaaatttggtaacatttgaacaattgttaggaaaagtcc 446298  T
Q  675 gagttactaaagag 688  Q
       |||||||||||    
T  446297 atattactaaagag 446284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 568 - 652
Target Start/End: Original strand, 8724 - 8807
Alignment:
Q  568 cactgcaacataattgagatttagaaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacattt 652  Q
    |||| |||||||||| |||||||| |||| || |||||||||||||||| ||  ||||||||||||| | ||| |||||||||||    
T  8724 cactacaacataattaagatttagtaacagttgaaaaatgtaactaaat-aaacaaaatgttactaaatgaatatagtaacattt 8807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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