View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4803-Insertion-2 (Length: 961)
Name: NF4803-Insertion-2
Description: NF4803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4803-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 730; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 730; E-Value: 0
Query Start/End: Original strand, 8 - 794
Target Start/End: Complemental strand, 36283303 - 36282518
Alignment:
| Q |
8 |
gatataacagttattgtggatagagaatgaaactcttttcatacaacttggttttctttgagctaagacacttttcacaatttgaacaaagttatttctt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36283303 |
gatataacagttattgtggatagagaatgaaactcttttcatacaacttggttttctttgagctaagacacttttcacaatttgaacaaagttatttctt |
36283204 |
T |
|
| Q |
108 |
gttggacaattttctgggaaatgaagagaattagtaagtgtccaaagagaaacccacctacgtgacaaaacactagtagcaatagcttcttttgttggta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36283203 |
gttggacaattttctgggaaatgaagagaattagtaagtgtccaaagagaaacccacctacgtgacaaaacactagtagcaatagcttcttttgttggta |
36283104 |
T |
|
| Q |
208 |
ggaatgaaaggatattagcaagtacttcattgtgtaaactactgatcctatcaacttgttcttctagttctagttttattttggccatgcaagggtttta |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36283103 |
ggaatgaaaggatattagcaagtacttcattgtgtaaactactgatcctatcaacttgttcttctagttctagttttcttttggccatgcaagggtttta |
36283004 |
T |
|
| Q |
308 |
atgtgggatatgggaaatgtaaataaaattagaggtgaaatggaagaggaaaacgtacctaaaggagaggaaatatgaacggtggtaggattttacagtg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36283003 |
atgtgggatatgggaaatgtaaataaaattagaggtgaaatggaagaggaaaacgtacctaaaggagaggaaatatgaacggtggtaggattttacagtg |
36282904 |
T |
|
| Q |
408 |
acagtgaaatacggtgggaaagtatgatatgaagttaaaaagaagatgataaccatttggtaaagttaactgtttgagatagtgggcggtggcggtttgg |
507 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36282903 |
acggtgaaatacggtgggaaagtatgatatgaagttaaaaagaagatgataaccatttggtaaagttaattgtttgagatagtgggcggtggcggtttgg |
36282804 |
T |
|
| Q |
508 |
cggtgctatagactagctatatgtaaaatgtaaagtaggagagnnnnnnnagttagttaggaaatgaagaggcatgtacacaaagaggaagaggattaca |
607 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36282803 |
cggtgctatagactagctatatgtaaaatgtaaagtaggagagtttttttaattagttaggaaatgaagaggcatgtacacaaagaggaagaggattaca |
36282704 |
T |
|
| Q |
608 |
attctctcatgaaaattttgtcgacttttctccattttcaatctacatggttaaaatgctcctacgacttttcttagtaattcaactttagttttctctc |
707 |
Q |
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| T |
36282703 |
attctctcatgaaaattttgtcgacttttctccattttcaatctacatggttaaaatgctcctactacttttcttagtaatttaactttagttttctctc |
36282604 |
T |
|
| Q |
708 |
atatgtttgaaggttgagatttcatttaagaaaaaattgagagaacccaaattcttacaaagagatagattttttagaggatgaagg |
794 |
Q |
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| T |
36282603 |
atatgtttgaaggttgagatttcatttaag-aaaaattgagagaatccaaattcttacaaagagatagattttttagaggatgaagg |
36282518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 122 - 265
Target Start/End: Complemental strand, 34553913 - 34553770
Alignment:
| Q |
122 |
tgggaaatgaagagaattagtaagtgtccaaagagaaacccacctacgtgacaaaacactagtagcaatagcttcttttgttggtaggaatgaaaggata |
221 |
Q |
| |
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|||||||||||||| || || || |||||||| |||| ||||||| | || |||||||| || | ||||| ||||| ||||||||||||||||||||| |
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| T |
34553913 |
tgggaaatgaagagcatcagcaaaagtccaaagtgaaatccacctatgggataaaacacttgttgtgatagcatctttggttggtaggaatgaaaggata |
34553814 |
T |
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| Q |
222 |
ttagcaagtacttcattgtgtaaactactgatcctatcaacttg |
265 |
Q |
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| ||||| ||| ||||| |||| |||||||||||||||||||| |
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| T |
34553813 |
taagcaattacctcatttggtaatctactgatcctatcaacttg |
34553770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 5e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 150 - 366
Target Start/End: Complemental strand, 29914750 - 29914536
Alignment:
| Q |
150 |
caaagagaaacccacctacgtgacaaaacactagtagcaatagcttcttttgttggtaggaatgaaaggatattagcaagtacttcatt-----gtgtaa |
244 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| || ||||||||||||||||| ||||| |
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| T |
29914750 |
caaagagaaacacacctacgtgacaaaacactagtttcaatagcttcttttgttgctaggaatgaaagaattttagcaagtacttcatttcctcatgtaa |
29914651 |
T |
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| Q |
245 |
actactgatcctatcaacttgttcttctagttctagttttattttggccatgcaagggttttaatgtgggatatgggaaatgtaaataaaattagaggtg |
344 |
Q |
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||||||||| |||||||||| || ||||||||| |||| || |||||||| | |||| ||| | |||| || ||||| |||||||||||| |
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| T |
29914650 |
actactgatactatcaacttatt-------ttctagtttccttttagctatgcaaggatgttaaaatggtgtttggggaaaataaatgaaattagaggtg |
29914558 |
T |
|
| Q |
345 |
aaatggaagaggaaaacgtacc |
366 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
29914557 |
aaatggaagaggaaaacgtacc |
29914536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 150 - 366
Target Start/End: Complemental strand, 29963903 - 29963689
Alignment:
| Q |
150 |
caaagagaaacccacctacgtgacaaaacactagtagcaatagcttcttttgttggtaggaatgaaaggatattagcaagtacttcatt-----gtgtaa |
244 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| || ||||||||||||||||| ||||| |
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| T |
29963903 |
caaagagaaacacacctacgtgacaaaacactagtttcaatagcttcttttgttgctaggaatgaaagaattttagcaagtacttcatttcctcatgtaa |
29963804 |
T |
|
| Q |
245 |
actactgatcctatcaacttgttcttctagttctagttttattttggccatgcaagggttttaatgtgggatatgggaaatgtaaataaaattagaggtg |
344 |
Q |
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||||||||| |||||||||| || ||||||||| |||| || |||||||| | |||| ||| | |||| || ||||| |||||||||||| |
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| T |
29963803 |
actactgatactatcaacttatt-------ttctagtttccttttagctatgcaaggatgttaaaatggtgtttggggaaaataaatgaaattagaggtg |
29963711 |
T |
|
| Q |
345 |
aaatggaagaggaaaacgtacc |
366 |
Q |
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|||||||||||||||||||||| |
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| T |
29963710 |
aaatggaagaggaaaacgtacc |
29963689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 499
Target Start/End: Complemental strand, 29897520 - 29897434
Alignment:
| Q |
420 |
ggtgggaaagtatgatatgaagttaaaaagaagatga-------taaccatttggtaaagttaactgtttgagatagtgggcggtgg |
499 |
Q |
| |
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||||| |||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| |||||||| |||| |
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| T |
29897520 |
ggtggaaaagtatgatatgaagttaaaaagaagaagaacatgtttaaccatttggtaaagttaatggtttgaggtagtgggcagtgg |
29897434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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