View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4803-Insertion-3 (Length: 927)
Name: NF4803-Insertion-3
Description: NF4803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4803-Insertion-3 |
 | |
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| [»] scaffold0015 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 584; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 8 - 662
Target Start/End: Original strand, 60175 - 60829
Alignment:
| Q |
8 |
aattgggtacttgagagtgaggataccacgtttagattgtgcctcatcaccaacatatgcgtctttttggcccataccaaccataacaccagtatgacga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
60175 |
aattgggtacttgagagtgaggataccacgtttagattgtgcctcatcaccaacatatgcatctttttggcccataccaaccataacaccagtatgacga |
60274 |
T |
|
| Q |
108 |
ggacgaccaacaatgctgggaaacacggcacgcggtgcatcatctccagcaaagcctgcctgaaagatggtatattccaatgttaatctatgatgtgtca |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
60275 |
ggacgaccaacaatgctgggaaacacggcacgcggtgcatcatctccagcaaagcctgcctgaaaaatggtatattccaatgttaatctatgatgtgtca |
60374 |
T |
|
| Q |
208 |
tctgaagctattcatcacaaggcagagnnnnnnnnncagatgaaaatgaaagaagaaaatgtgatctataatagatggtaccttgaccattccagtttca |
307 |
Q |
| |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
60375 |
tctgaagctattcatcacaaggcagagaaaaaaaaacaaatgaaaatgaaagaagaaaatgtgatctataatagatggtaccttgaccattccagttcca |
60474 |
T |
|
| Q |
308 |
ttgtcacaaacaagaggttgaatatcctcagcgtctgccatcttcttctagtatggtttgttgatcagctggataaacaacaaatgtacaattttaatta |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60475 |
ttgtcacaaacaagaggttgaatatcctcagcgtctgccatcttcttctagtatggtttgttgatcagctggataaacaacaaatgtacaattttaatta |
60574 |
T |
|
| Q |
408 |
attaataatttaagatatgaaagtgaaaggattgcaatgccatgagatgaaacgcctattttgccacaaatcaactacccacaacctctttaccattgac |
507 |
Q |
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| T |
60575 |
attaataatttaagatatgaaagtgaaaggattgcaatgccatgagatgaaacgcctattttgccacaaatcaactacccacaacctctttaccatcgac |
60674 |
T |
|
| Q |
508 |
atgtgtcattgttcgacaccgacacacgtgatgtgattactctcaattttgtcattttttaaaattattaacggtgtcgatgtgtacatgtcaatatgtg |
607 |
Q |
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||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
60675 |
atgtgtcgttgttcgacaccgacacatgtgatgtgattactttcaattttgtcattttttaaaattattaacgatgtcgacgtgtacatgtcaatatgtg |
60774 |
T |
|
| Q |
608 |
catgtcaatgtcgaatcaggtgtatgtgcttcatagtccacaacacagagacatc |
662 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
60775 |
catgtcaatgtcgaatcaggtgtatgtgcttcatagtccacgacacagagacatc |
60829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 720 - 927
Target Start/End: Original strand, 60887 - 61098
Alignment:
| Q |
720 |
gagttatgatctatctatttaccaatttggtaatcgatttctgatctgtattgtattgtatgcaaaatgtcagatccaacttcattctctagaaagctaa |
819 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60887 |
gagttatgatctatctatttaccaatttggtaatcgatttcagatctgtattgtattgtatgcaaaatgtcagatccaacttcattctctagaaagctaa |
60986 |
T |
|
| Q |
820 |
ttagctaaatacaatgcaat---------ttctaggaagtacgaaatgcatacatgggacattggccaacactatttagtattggatacgttgatactag |
910 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| |||||| |||||||| |||||||||||||||| |
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| T |
60987 |
ttagctaaatacaatgcaatgcaatgcaattctaggaagtacg-aatgcataca-cggacattggcc-acacta-ttagtatt-gatacgttgatactag |
61081 |
T |
|
| Q |
911 |
tagtaatgtaagaaaat |
927 |
Q |
| |
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||||||||||||||||| |
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| T |
61082 |
tagtaatgtaagaaaat |
61098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 39 - 172
Target Start/End: Complemental strand, 8688793 - 8688660
Alignment:
| Q |
39 |
ttagattgtgcctcatcaccaacatatgcgtctttttggcccataccaaccataacaccagtatgacgaggacgaccaacaatgctgggaaacacggcac |
138 |
Q |
| |
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||||| ||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||| |||| |
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| T |
8688793 |
ttagactgtgcctcatcaccaacatatgcatctttttgacccatgccaaccatcacaccagtgtgacgaggacgacctacaatgctgggaaacacagcac |
8688694 |
T |
|
| Q |
139 |
gcggtgcatcatctccagcaaagcctgcctgaaa |
172 |
Q |
| |
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| || ||||||||||||||||| || |||||||| |
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| T |
8688693 |
gaggggcatcatctccagcaaatccagcctgaaa |
8688660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 285 - 349
Target Start/End: Complemental strand, 8688094 - 8688030
Alignment:
| Q |
285 |
gtaccttgaccattccagtttcattgtcacaaacaagaggttgaatatcctcagcgtctgccatc |
349 |
Q |
| |
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||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8688094 |
gtaccttaaccattccagttccattgtcacaaacaagaggttgaatatcctcagcgtctgccatc |
8688030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 160
Target Start/End: Original strand, 37051393 - 37051511
Alignment:
| Q |
42 |
gattgtgcctcatcaccaacatatgcgtctttttggcccataccaaccataacaccagtatgacgaggacgaccaacaatgctgggaaacacggcacgcg |
141 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||| |||||||| || || || ||||| ||||| || || ||||| || || || || | | |
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| T |
37051393 |
gattgtgcttcatcaccaacatatgcatctttttgtcccattccaaccattacccctgtgtgacgtggacgtcctactatgctagggaatactgcccttg |
37051492 |
T |
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| Q |
142 |
gtgcatcatctccagcaaa |
160 |
Q |
| |
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||||||||||||| ||||| |
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| T |
37051493 |
gtgcatcatctcctgcaaa |
37051511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 43647813 - 43647970
Alignment:
| Q |
12 |
gggtacttgagagtgaggataccacgtttagattgtgcctcatcaccaacatatgcgtctttttggcccataccaaccataacaccagtatgacgaggac |
111 |
Q |
| |
|
|||||||||||||| || ||||| | ||| ||||| || || ||||||||||| || || |||||||||||||||||||| ||||| ||||||||||| | |
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| T |
43647813 |
gggtacttgagagtaagaatacctctttttgattgggcttcgtcaccaacataggcatccttttggcccataccaaccatgacaccggtatgacgaggtc |
43647912 |
T |
|
| Q |
112 |
gaccaacaatgctgggaaacacggcacgcggtgcatcatctccagcaaagcctgcctg |
169 |
Q |
| |
|
| |||||||| || |||||||| || | || |||||||| |||||||| || ||||| |
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|
| T |
43647913 |
ggccaacaatacttggaaacacagccctaggagcatcatcaccagcaaatccagcctg |
43647970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 43648060 - 43648124
Alignment:
| Q |
287 |
accttgaccattccagtttcattgtcacaaacaagaggttgaatatcctcagcgtctgccatctt |
351 |
Q |
| |
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| T |
43648060 |
accttcaccattccagttccattgtcacaaacaaggggttgaatatcctcagcatctgccatctt |
43648124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 41387611 - 41387481
Alignment:
| Q |
30 |
ataccacgtttagattgtgcctcatcaccaacatatgcgtctttttggcccataccaaccataacaccagtatgacgaggacgaccaacaatgctgggaa |
129 |
Q |
| |
|
|||||||| || || || || ||||||||||||||||| |||||||| ||||| |||||||| ||||| || || || || |||||||||||||| |||| |
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| T |
41387611 |
ataccacgcttggactgagcttcatcaccaacatatgcatctttttgtcccatgccaaccatcacaccggtgtggcgtggtcgaccaacaatgctaggaa |
41387512 |
T |
|
| Q |
130 |
acacggcacgcggtgcatcatctccagcaaa |
160 |
Q |
| |
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|||| || | || ||||||||||||||||| |
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| T |
41387511 |
acacagcccttggagcatcatctccagcaaa |
41387481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 1263502 - 1263566
Alignment:
| Q |
287 |
accttgaccattccagtttcattgtcacaaacaagaggttgaatatcctcagcgtctgccatctt |
351 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||| |||||||| || |||||||| |
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|
| T |
1263502 |
accttgaccattccagttccattgtcaacaacaagaggttgaatgtcctcagcatcagccatctt |
1263566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 169
Target Start/End: Original strand, 1263205 - 1263350
Alignment:
| Q |
24 |
gtgaggataccacgtttagattgtgcctcatcaccaacatatgcgtctttttggcccataccaaccataacaccagtatgacgaggacgaccaacaatgc |
123 |
Q |
| |
|
||||||||||| | ||||| || || |||||||| ||||| || || || || ||||| |||||||| ||||| ||||||||||| || |||| ||| | |
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| T |
1263205 |
gtgaggatacccctcttagactgagcttcatcacctacataagcatccttctgacccatcccaaccattacaccggtatgacgaggtcgcccaataatac |
1263304 |
T |
|
| Q |
124 |
tgggaaacacggcacgcggtgcatcatctccagcaaagcctgcctg |
169 |
Q |
| |
|
|||| |||||||| | || |||||||| || ||||| || ||||| |
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| T |
1263305 |
tggggaacacggccctaggagcatcatcgcctgcaaaaccagcctg |
1263350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 286 - 348
Target Start/End: Complemental strand, 66451 - 66389
Alignment:
| Q |
286 |
taccttgaccattccagtttcattgtcacaaacaagaggttgaatatcctcagcgtctgccat |
348 |
Q |
| |
|
|||||| |||||||||||| |||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
66451 |
taccttaaccattccagttccattatcacaaacaagaggttgaatatcctcagcatctgccat |
66389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 67170 - 67009
Alignment:
| Q |
8 |
aattgggtacttgagagtgaggataccacgtttagattgtgcctcatcaccaacatatgcgtctttttggcccataccaaccataacaccagtatgacga |
107 |
Q |
| |
|
|||||||||||| ||||| | ||||| | ||| ||||| || ||||||||||||||||| || ||||| |||||||||||||| ||||| || || || |
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| T |
67170 |
aattgggtactttagagtcaaaatacccctttttgattgagcttcatcaccaacatatgcatccttttgtcccataccaaccatcacaccggtgtggcgt |
67071 |
T |
|
| Q |
108 |
ggacgaccaacaatgctgggaaacacggcacgcggtgcatcatctccagcaaagcctgcctg |
169 |
Q |
| |
|
|| ||||| ||||| || || ||||| || | |||||||||||||| ||||| || ||||| |
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|
| T |
67070 |
ggtcgacctacaatactagggaacaccgcccttggtgcatcatctccggcaaatccagcctg |
67009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 538 - 585
Target Start/End: Complemental strand, 14480185 - 14480138
Alignment:
| Q |
538 |
atgtgattactctcaattttgtcattttttaaaattattaacggtgtc |
585 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
14480185 |
atgtgattactttcaattttgtcatttttccaaattattatcggtgtc |
14480138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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