View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4803-Insertion-4 (Length: 789)
Name: NF4803-Insertion-4
Description: NF4803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4803-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 536; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 8 - 572
Target Start/End: Original strand, 24066806 - 24067372
Alignment:
| Q |
8 |
attattaattcttgtttgcggaacaaactcgagagaagattttgcagcaggtgggggacagtttccaccggcaatgtaagccgccgtgacattatgcatc |
107 |
Q |
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| T |
24066806 |
attattaattcttgtttgcagaacaaactcgggagaagattttgcagcaggtgggggacagtttccaccggcaatgtaagccgccgtgacattatgcatc |
24066905 |
T |
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| Q |
108 |
ccttgtaataacatcatattcctatttttctcttgttctatgataaacatttcttgatccattgtcaccttatgatttttcaagctgatatactcatata |
207 |
Q |
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| T |
24066906 |
ccttgtaataacatcatattcctatttttctcttgttctatgataaacatttcttgatccattgtcaccttatgatttttcaggctgatatactcatata |
24067005 |
T |
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| Q |
208 |
atatctcatccaatgtcatcaaattcttaggtgcctgaataaaaaacatcaaaacaataagccaataattaagaaaacctaaactctaagacaatatctg |
307 |
Q |
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| T |
24067006 |
atatctcatccaatgtcatcaaattcttaggtgcctgaataaaaaacattaaaacaataagccaataattaagaaaacctaaactctaagacaatatctg |
24067105 |
T |
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| Q |
308 |
caaaaacaaaaggaggcatttgcatctaaagaggctaactttgagattgaaattgaagactagatgtagaaatatacctcttgaataggagaatgggcga |
407 |
Q |
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| T |
24067106 |
caaaaacaaaaggaggcatttgcatctaaagaggctaactttgagattgaaattgaagactagatgtagaaatatacctcttgaataggagaatgggcga |
24067205 |
T |
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| Q |
408 |
agagacgagaagcttcgtttctgaatgtgtaacgagtggatgagaagttatggtccaagaggtatttgtcaactaaaaaagcaacttgttcagggatgac |
507 |
Q |
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| T |
24067206 |
agagacgagaagcttcgtttctgaatgtgtaacgagtggatgagaagttatggtccaagaggtatttgtcaactaaaaaagcaacttgttcagggatgac |
24067305 |
T |
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| Q |
508 |
ttttgccgccatt--aacaaagaatgaagttatagacctgtgagatcaaaaacaaatagaaaacttt |
572 |
Q |
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| T |
24067306 |
ttttgccgccattagaacaaagaatgaagatatagacctgtgagatcaaaaacaaatagaaaacttt |
24067372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 235
Target Start/End: Original strand, 24066184 - 24066288
Alignment:
| Q |
131 |
atttttctcttgttctatgataaacatttcttgatccattgtcaccttatgatttttcaagctgatatactcatataatatctcatccaatgtcatcaaa |
230 |
Q |
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| T |
24066184 |
atttttctcttgtgctaacataaacttttcttgatccatcataatcttatgctctttcaagctaatatacgcatccaacatctcatccaatgttatcaaa |
24066283 |
T |
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| Q |
231 |
ttctt |
235 |
Q |
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|||| |
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| T |
24066284 |
ctctt |
24066288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 415 - 505
Target Start/End: Original strand, 24066450 - 24066540
Alignment:
| Q |
415 |
agaagcttcgtttctgaatgtgtaacgagtggatgagaagttatggtccaagaggtatttgtcaactaaaaaagcaacttgttcagggatg |
505 |
Q |
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||||||||||| |||||| ||| ||||||| ||||| || || | |||||| |||||||||||||| | || ||||| |||| ||||||| |
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| T |
24066450 |
agaagcttcgtctctgaaagtggaacgagttgatgaaaaattgttgtccaacaggtatttgtcaacgatgaatgcaacctgttgagggatg |
24066540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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