View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4803-Insertion-5 (Length: 537)
Name: NF4803-Insertion-5
Description: NF4803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4803-Insertion-5 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 8 - 537
Target Start/End: Complemental strand, 191823 - 191297
Alignment:
| Q |
8 |
aaaccatcatttgaatggaaattacccaattgtaaaacataaagannnnnnnaattgaaaaaataaggatgtttgttttacctctaacatgttgggttga |
107 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
191823 |
aaaccatcatttgaattgaaattacccaagtgtaaaacataaagatttttttaattaaaaaaataaggatgtttgttttacctctaacatgttgggttga |
191724 |
T |
|
| Q |
108 |
agttattatcacaagctactcaaagatccctagctagagagtgtgactcaacatctcctttgatttttcggtgggaacttttgcagaatatgagaatata |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
191723 |
agttattatcacaagctactcaaagatccctag----agagtgtgactcaacatctcctttgatttttcggtgggaacttttgcagaatatgagaatata |
191628 |
T |
|
| Q |
208 |
cttttccaaaaagaaaccctttggttccaaaaatatagagagaagtgggttcgttttggaagtaggaacattgcttttctccatactcaaactactatct |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
191627 |
cttttccaaaaagaaaccctttggttccaaaaatatagagagaagtgggttcgttttggaagtaggaacattgcttttctccatactcaaactactatct |
191528 |
T |
|
| Q |
308 |
atcggg-nnnnnnnntgcgggatcactcttccaacaggtgaatggtgtacaaataatgttgttgaagattgaagttttaaagttattttaaggatctttt |
406 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
191527 |
atcgggaaaaaaaaatgcgggatcactcttccaacaggtgaatggtgtacaaataatgttgttgaagattgaagttttaaagttattttaaggatctttt |
191428 |
T |
|
| Q |
407 |
ttgttccaaggaaaatattgtgcatcctactatgatcgtggatcctaatcctctaggggaagtgcacaagacaagcttattggtgttcattagtaacaaa |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
191427 |
ttgttccaaggaaaatattgtgcatcctactatgatcgtggatcctaatcctctaggggaagtgcacaagacaagcttattggtgttcattagtaacaaa |
191328 |
T |
|
| Q |
507 |
gagatttatcaagctctcatgagcatgaagt |
537 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
191327 |
gagatttatcaagctctcatgagcatgaagt |
191297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University