View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4803-Insertion-6 (Length: 494)

Name: NF4803-Insertion-6
Description: NF4803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4803-Insertion-6
NF4803-Insertion-6
[»] chr3 (4 HSPs)
chr3 (8-494)||(3139593-3140080)
chr3 (159-292)||(3157513-3157646)
chr3 (153-236)||(3166756-3166840)
chr3 (128-177)||(2022377-2022425)
[»] chr8 (5 HSPs)
chr8 (247-321)||(23851178-23851252)
chr8 (156-235)||(23853464-23853536)
chr8 (149-204)||(23851618-23851672)
chr8 (410-466)||(23851084-23851140)
chr8 (410-466)||(23853216-23853272)
[»] chr5 (1 HSPs)
chr5 (127-190)||(1744003-1744065)
[»] chr7 (1 HSPs)
chr7 (128-176)||(9020868-9020915)


Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 8 - 494
Target Start/End: Original strand, 3139593 - 3140080
Alignment:
Q  8 gtacaaactagggatagcaaactataccttgtgnnnnnnnnnn-atttggtgaaaagaaaagcttatatttaaaaagagnnnnnnnnncaaggattactg 106  Q
    |||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||| |||||||||         |||||||||       
T  3139593 gtacaaactagggatagcaaactataccttgtgtttttttttttatttggtgaaaagaaaagcttatatataaaaagagtttttttttcaaggattatat 3139692  T
Q  107 agttctcgccaagaaaaagagttatttatttaaaaaatatttagagttaatgcaaatatctttatgaataaggaaaaaagatatatgatgcatattttgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3139693 agttctcgccaagaaaaagagttatttatttaaaaaatatttagagttaatgcaaatatctttatgaataaggaaaaaagatatatgatgcatattttgc 3139792  T
Q  207 tgttattatttgaattataattacaatagcaatgatgattgaaatttgaaacgatgtatggaaggtatacactgcttgatttgtgcctgaatatcattac 306  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3139793 tgttattatttgaattataattacaatagcaataatgattgaaatttgaaacgatgtatggaaggtatgcactgcttgatttgtgcctgaatatcattac 3139892  T
Q  307 cttcctaaactgatttaaattataatgcgtgtgtttaattactcaaatattctatattagatgagtggtattagtacaacacagttttgatgtacttcaa 406  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3139893 cttcctaaactgatttaaactataatgcgtgtggttaattactcaaatattctatattagatgagtggtattagtacaacacagttttgatgtacttcaa 3139992  T
Q  407 atttgatttcaaaccgagaagcaaatttggtaaattagaaataattacggatgtaattttggcttcatcaatgaatgatatatccata 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3139993 atttgatttcaaaccgagaagcaaatttggtaaattagaaataattacggatgtaattttggcttcatcaatgaatgatatatccata 3140080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 159 - 292
Target Start/End: Original strand, 3157513 - 3157646
Alignment:
Q  159 caaatatctttatgaataaggaaaaaagatatatgatgcatatt----ttgctgttattatttgaattataattacaatagcaatgatgattgaaatttg 254  Q
    |||||||||||||||||||||||| || |||| |||||||||||    || || |||||||||||||||||||||||||||| | |   || |||| ||     
T  3157513 caaatatctttatgaataaggaaagaa-atatctgatgcatattaattttact-ttattatttgaattataattacaatagctaagt--atcgaaagttt 3157608  T
Q  255 aaacgatgtatggaaggtatacactgcttgatttgtgc 292  Q
    |||||||||||||||||||| |||||||||||||||||    
T  3157609 aaacgatgtatggaaggtatgcactgcttgatttgtgc 3157646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 236
Target Start/End: Complemental strand, 3166840 - 3166756
Alignment:
Q  153 ttaatgcaaatatctttatgaataaggaaaaaagatatatgatgcatattttg--ctgttattatttgaattataattacaatagc 236  Q
    ||||||||||||||||||| |||||||||  |  | ||   ||||||||||||  |||||||||||||||||||||||| ||||||    
T  3166840 ttaatgcaaatatctttataaataaggaagcataa-atcacatgcatattttgtgctgttattatttgaattataattataatagc 3166756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 2022425 - 2022377
Alignment:
Q  128 ttatttatttaaaaaatatttagagttaatgcaaatatctttatgaataa 177  Q
    |||||||||| |||||||||| ||||||||| |||||||||||| |||||    
T  2022425 ttatttattttaaaaatattt-gagttaatgtaaatatctttataaataa 2022377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 247 - 321
Target Start/End: Complemental strand, 23851252 - 23851178
Alignment:
Q  247 gaaatttgaaacgatgtatggaaggtatacactgcttgatttgtgcctgaatatcattaccttcctaaactgatt 321  Q
    |||| |||||||||||||||  | |||| ||||||||||||||||||| |||||||||  |||||||||||||||    
T  23851252 gaaagttgaaacgatgtatgacatgtatgcactgcttgatttgtgcctaaatatcattgtcttcctaaactgatt 23851178  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 23853536 - 23853464
Alignment:
Q  156 atgcaaatatctttatgaataaggaaaaaagatatatgatgcatattttgctgttattatttgaattataattacaatag 235  Q
    |||||||||||||||||||||| | ||| |||||| |||||||||||      ||||||| |||||||||||||||||||    
T  23853536 atgcaaatatctttatgaataa-gcaaagagatatctgatgcatatt------ttattatatgaattataattacaatag 23853464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 23851672 - 23851618
Alignment:
Q  149 agagttaatgcaaatatctttatgaataaggaaaaaagatatatgatgcatatttt 204  Q
    ||||||||||||| ||||||| ||||||||| ||| |||||| |||||||||||||    
T  23851672 agagttaatgcaattatctttttgaataagg-aaagagatatctgatgcatatttt 23851618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 466
Target Start/End: Complemental strand, 23851140 - 23851084
Alignment:
Q  410 tgatttcaaaccgagaagcaaatttggtaaattagaaataattacggatgtaatttt 466  Q
    |||||||||| ||||||||||| |  |||| || |||| ||||||||||||||||||    
T  23851140 tgatttcaaatcgagaagcaaaataagtaacttggaaacaattacggatgtaatttt 23851084  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 466
Target Start/End: Complemental strand, 23853272 - 23853216
Alignment:
Q  410 tgatttcaaaccgagaagcaaatttggtaaattagaaataattacggatgtaatttt 466  Q
    |||||||||||||||| ||||| | ||||| || |||| ||||||||||||| ||||    
T  23853272 tgatttcaaaccgagaggcaaaataggtaacttggaaacaattacggatgtactttt 23853216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 1744065 - 1744003
Alignment:
Q  127 gttatttatttaaaaaatatttagagttaatgcaaatatctttatgaataaggaaaaaagatat 190  Q
    |||||||||||| |||||  || ||||||||||||||||||| ||||||||| |||| ||||||    
T  1744065 gttatttatttagaaaattgtt-gagttaatgcaaatatcttcatgaataagtaaaagagatat 1744003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 9020868 - 9020915
Alignment:
Q  128 ttatttatttaaaaaatatttagagttaatgcaaatatctttatgaata 176  Q
    |||||||||||||||||||||  ||| |||||||||||||||| |||||    
T  9020868 ttatttatttaaaaaatattt-tagtcaatgcaaatatctttaagaata 9020915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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