View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4803-Insertion-7 (Length: 466)
Name: NF4803-Insertion-7
Description: NF4803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4803-Insertion-7 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 189 - 413
Target Start/End: Complemental strand, 33836620 - 33836380
Alignment:
| Q |
189 |
gctcaaattcaatgaatgaagaatttctccttgtatttttgtgatgtaagaatcaaagaa----------------taacagaaagaagggtcattcaca |
272 |
Q |
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| T |
33836620 |
gctcaaattcaatgaatgaagaatttctccttgtatttttgtgatgtaagaatcaaagaagaattgtttcaaagaataacagaaagaagggtcattcaca |
33836521 |
T |
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| Q |
273 |
atatcaatgccttccttagactctcttgattccttcctcttttctctcagctcagaattctcttctccttttggatttttcattcaaattcaggtaggtt |
372 |
Q |
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| T |
33836520 |
atatcaatgccttccttagactctcttgattccttcctcttttctctcagctcagaattctcttctccttttggatttttcattcaaattcaggtaggtt |
33836421 |
T |
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| Q |
373 |
ttccatttctgcagtactctctcctttacatattgaacttt |
413 |
Q |
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| T |
33836420 |
ttccatttctgcattactctctcttttacatattcaacttt |
33836380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 33836797 - 33836712
Alignment:
| Q |
8 |
attgtaatatagtctttggagtctaaaaaactatatgtaacaaccaatccctctcttctctatttttagcctgtgttttaaaacat |
93 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33836797 |
attgtaatatagtctttggagtctaaaaaactatatgtaacaaccaatccctctcttctctatttttagcttgtgttttaaaacat |
33836712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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