View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4803_high_2 (Length: 242)
Name: NF4803_high_2
Description: NF4803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4803_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 10045812 - 10046048
Alignment:
| Q |
1 |
ctgacagaaactgttggaccagatcaaattgctgaggttgttagccgatggactggtataccagtgacccgtttaggccaaaatgataaagaaaggttgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10045812 |
ctgacagaaactgttggaccagatcaaattgctgaggttgttagccgatggaccggtataccagtgactcgtttaggccaaaatgataaagaaaggttgg |
10045911 |
T |
|
| Q |
101 |
ttggacttggagacagattgcatactagggttgtgggacaagaccaagcagttaaagctgtcgctggggctgtagtaaggtcgagagctggtctaggaag |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10045912 |
ttggacttggagacagattgcatactagagttgtgggacaagaccaagcagttaaagctgtcgctggggctgtagtaaggtcgagagctggtctaggaag |
10046011 |
T |
|
| Q |
201 |
accgcaacaaccaactggttccttcctattccttggt |
237 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||| |
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| T |
10046012 |
accacaacaaccaactggttccttcctattccttggt |
10046048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 38707604 - 38707840
Alignment:
| Q |
1 |
ctgacagaaactgttggaccagatcaaattgctgaggttgttagccgatggactggtataccagtgacccgtttaggccaaaatgataaagaaaggttgg |
100 |
Q |
| |
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||||||||||||||||||||||| || || ||| ||||||||||||||||||| |||| ||| ||||| ||| ||| |||||||||||||||||||||| |
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| T |
38707604 |
ctgacagaaactgttggaccagaccatatagctaaggttgttagccgatggaccggtacaccggtgactcgtctagtgcaaaatgataaagaaaggttgg |
38707703 |
T |
|
| Q |
101 |
ttggacttggagacagattgcatactagggttgtgggacaagaccaagcagttaaagctgtcgctggggctgtagtaaggtcgagagctggtctaggaag |
200 |
Q |
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| T |
38707704 |
ttggacttggtgacaaattgcacagtagagttgtgggacaagaccaagcagttaaagtttttgctggggctgtagtgagatcgagagttggtttaagaag |
38707803 |
T |
|
| Q |
201 |
accgcaacaaccaactggttccttcctattccttggt |
237 |
Q |
| |
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||| ||| ||||||||||| ||||||||||||||||| |
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| T |
38707804 |
acctcaaaaaccaactggtcccttcctattccttggt |
38707840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 2 - 237
Target Start/End: Original strand, 45467666 - 45467901
Alignment:
| Q |
2 |
tgacagaaactgttggaccagatcaaattgctgaggttgttagccgatggactggtataccagtgacccgtttaggccaaaatgataaagaaaggttggt |
101 |
Q |
| |
|
|||| ||||| |||||||| || ||||| || ||||||||||||||||||||||||||||||||||| | | ||||||||||| |||| ||||||||| |
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| T |
45467666 |
tgacggaaacagttggaccggaccaaatagccgaggttgttagccgatggactggtataccagtgactaggctcggccaaaatgagaaagcaaggttggt |
45467765 |
T |
|
| Q |
102 |
tggacttggagacagattgcatactagggttgtgggacaagaccaagcagttaaagctgtcgctggggctgtagtaaggtcgagagctggtctaggaaga |
201 |
Q |
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||||||||| |||||| |||| ||||| || ||||||||||||||||| ||||| ||||| |||| ||||||| | || || ||||||||| |||||||| |
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| T |
45467766 |
tggacttggtgacagactgcacactagagtcgtgggacaagaccaagcggttaatgctgttgctgaggctgtattgagatcaagagctggtttaggaaga |
45467865 |
T |
|
| Q |
202 |
ccgcaacaaccaactggttccttcctattccttggt |
237 |
Q |
| |
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|| ||||||||||||||||||||| ||||||||||| |
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| T |
45467866 |
ccccaacaaccaactggttccttcttattccttggt |
45467901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 742940 - 742730
Alignment:
| Q |
27 |
aattgctgaggttgttagccgatggactggtataccagtgacccgtttaggccaaaatgataaagaaaggttggttggacttggagacagattgcatact |
126 |
Q |
| |
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||||||| ||||||||||| || ||| || ||||||||||||| | ||| ||||||| ||||||||||| ||||| |||| ||||| ||||||| | |
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| T |
742940 |
aattgctatggttgttagcctattgaccggcataccagtgacccaaattggcgaaaatgagaaagaaaggtttcttggaattggtgacaggttgcataat |
742841 |
T |
|
| Q |
127 |
agggttgtgggacaagaccaagcagttaaagctgtcgctggggctgtagtaaggtcgagagctggtctaggaagaccgcaacaaccaactggttccttcc |
226 |
Q |
| |
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|| |||||||||||||| |||||||| || | || ||| |||||| |||||| |||||||||| ||||||||| ||||| |||| ||||||||||| |
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| T |
742840 |
agagttgtgggacaagatcaagcagtaaatgacgttgctaacgctgtattaaggtggagagctggttcaggaagacctcaacatccaattggttccttcc |
742741 |
T |
|
| Q |
227 |
tattccttggt |
237 |
Q |
| |
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||||||||||| |
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| T |
742740 |
tattccttggt |
742730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 42450221 - 42449986
Alignment:
| Q |
2 |
tgacagaaactgttggaccagatcaaattgctgaggttgttagccgatggactggtataccagtgacccgtttaggccaaaatgataaagaaaggttggt |
101 |
Q |
| |
|
||||| ||||||||| |||||| | ||| | | ||||||||||| || ||| |||||||||||| |||| | | ||||||| ||||||||||| | |
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| T |
42450221 |
tgacaaaaactgttgaaccagacctaataggtttggttgttagcctattgacgggtataccagtgtcccgacttagtgaaaatgagaaagaaaggtttct |
42450122 |
T |
|
| Q |
102 |
tggacttggagacagattgcatactagggttgtgggacaagaccaagcagttaaagctgtcgctggggctgtagtaaggtcgagagctggtctaggaaga |
201 |
Q |
| |
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||||||||| ||||| || || | || || ||||||||||| || ||||| || || || ||| ||||| | ||| ||||| |||| |||||||| |
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| T |
42450121 |
tggacttggtgacaggttacacaaaagagtagtgggacaagatcatgcagtaaatgccgttgctaacactgtattgaggcggagagttggtttaggaaga |
42450022 |
T |
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| Q |
202 |
ccgcaacaaccaactggttccttcctattccttggt |
237 |
Q |
| |
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|| ||||| |||| |||||||||||||||||||||| |
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| T |
42450021 |
cctcaacatccaattggttccttcctattccttggt |
42449986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 43064834 - 43064760
Alignment:
| Q |
163 |
gctggggctgtagtaaggtcgagagctggtctaggaagaccgcaacaaccaactggttccttcctattccttggt |
237 |
Q |
| |
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|||| ||||||| | || || ||||||||| |||||||| | ||||||||||| || ||||||||||||||||| |
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| T |
43064834 |
gctgaggctgtattgagatcaagagctggtttaggaagagctcaacaaccaacatgtcccttcctattccttggt |
43064760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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