View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4803_low_1 (Length: 496)
Name: NF4803_low_1
Description: NF4803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4803_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 235 - 484
Target Start/End: Complemental strand, 6486616 - 6486367
Alignment:
| Q |
235 |
gttcgatgacccttagctcactagacgagctatttggattctttgcatgaacatggtgcagttcgctgcagaaccatttgatgtaaactgaatttgagtt |
334 |
Q |
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| T |
6486616 |
gttcgatgacccttagctcactagacgagctatttggattctttgcatgtacatggtgcagttcgctgcagaaccgtttgatgtaaactgaatttgagtt |
6486517 |
T |
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| Q |
335 |
cacaaacggctctgcaatgtgctgcaccatacagagaatccaaatctaaataaaatgttattgtatcctaaaattaatcgttgctaacttataattaatt |
434 |
Q |
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| T |
6486516 |
cacaaacggctctgcaatgtgctgcaccatacagagaatccaaatctaaataaaatgttattgtatcctaaaattaatcgttgctaacttataattaatt |
6486417 |
T |
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| Q |
435 |
tgaaatttggaattcagattaagtggtgagggctcaccaatgatgatgtc |
484 |
Q |
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| T |
6486416 |
tgaaatttggaattcagattaagtggtgagggctcaccaatgatgatgtc |
6486367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 6486838 - 6486678
Alignment:
| Q |
14 |
cagcagcaacaacaataataacattcctcgtccacagtttatgcaatccgaaccccgattttccacaacagaagcctatactgacgatgactatgccatg |
113 |
Q |
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| T |
6486838 |
cagcagcaacaacaacaataacattcctcgtccacagtttatgcaatccgaaccccgattttccacaacagaagcctatactgacgatgactatgccatg |
6486739 |
T |
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| Q |
114 |
cgtagcagcagcgccgcctcccccatgagcccttactactacgaccctggaaggtctctcc |
174 |
Q |
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| T |
6486738 |
cgtagcagcagcgccgcctcccccatgagcccttactactacgaccctggaaggtctctcc |
6486678 |
T |
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