View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4803_low_2 (Length: 332)
Name: NF4803_low_2
Description: NF4803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4803_low_2 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 332
Target Start/End: Complemental strand, 28533189 - 28532865
Alignment:
| Q |
17 |
acaaacaccatcttcccaactacaccacccttactcataattttacttccatttatgtatgttttttgtcttagtctctcacaaattgcatctaaaatag |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28533189 |
acaaacaccatctttccaactacaccacccttactcataattttacttccatttatgtatgttttttgtcttagtctctcacaaattgcatctaaaatag |
28533090 |
T |
|
| Q |
117 |
gctcatccatcaatgagaaaattctaatctgcacacatataattagattctaaacatttatataatgcaaaatagataagtcagaagcaaattattggtt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
28533089 |
gctcatccatcaatgagaaaattctaatctgcacacatataattagattctcaacatttatataatgcaaaagagatacgtcagaagcaaattattggtt |
28532990 |
T |
|
| Q |
217 |
tactatgcatcgattg---------aataagtgacacaaacgagttttaagaaggtttatagttcaaactctaaaatcggacctaacccgtaacttacta |
307 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28532989 |
tactatgcatcgattgatggtctaaaataagtgacacaaacgagttttaagaaggtttatagttcaaactctaaaatcggacctaacccgtaacttacta |
28532890 |
T |
|
| Q |
308 |
acatttttctatccaaattgatgct |
332 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
28532889 |
acatttttctatccaaattgatgct |
28532865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 27896854 - 27896780
Alignment:
| Q |
55 |
aattttacttccatttatgtatgttttttgtcttagtctctcacaaattgcatctaaaataggctcatccatcaa |
129 |
Q |
| |
|
|||||| ||||| || ||||| ||||||||||||||||||| ||||| || || | |||||| ||||||||||| |
|
|
| T |
27896854 |
aattttgcttcctttgatgtaaattttttgtcttagtctctcgcaaatggcgtccagaataggatcatccatcaa |
27896780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 28016615 - 28016531
Alignment:
| Q |
40 |
accacccttactcataattttacttccatttatgtatgttttttgtcttagtctctcacaaattgcatctaaaataggctcatcc |
124 |
Q |
| |
|
|||||||| ||||| |||||||||||| | |||||||| ||||| ||||| ||||| ||| |||||||| | |||||||||| |
|
|
| T |
28016615 |
accaccctgactcaaaattttacttccttcaatgtatgtcgtttgtactagtcgctcacgaatagcatctaagacaggctcatcc |
28016531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 28090656 - 28090572
Alignment:
| Q |
40 |
accacccttactcataattttacttccatttatgtatgttttttgtcttagtctctcacaaattgcatctaaaataggctcatcc |
124 |
Q |
| |
|
|||||||| ||| | |||||||||||| || |||||||| | ||| |||||||||||| ||| || ||||| ||||| |||||| |
|
|
| T |
28090656 |
accaccctgactgagaattttacttcctttaatgtatgtcgtctgtattagtctctcacgaatggcgtctaagataggttcatcc |
28090572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 1439332 - 1439248
Alignment:
| Q |
40 |
accacccttactcataattttacttccatttatgtatgttttttgtcttagtctctcacaaattgcatctaaaataggctcatcc |
124 |
Q |
| |
|
|||||||| ||||| |||| ||||||| || |||||||| | ||| |||||||||||| ||| |||||||| ||||| |||||| |
|
|
| T |
1439332 |
accaccctgactcagaattctacttcctttaatgtatgtcgtctgtattagtctctcacgaatggcatctaagataggttcatcc |
1439248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University