View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4803_low_4 (Length: 237)
Name: NF4803_low_4
Description: NF4803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4803_low_4 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 59960 - 60179
Alignment:
| Q |
1 |
tagagtgaaagaacggcctgaattgccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatcttctcacgattagcctttggattaa |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59960 |
tagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatcttctcacgattagcctttggattaa |
60059 |
T |
|
| Q |
101 |
gaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaatcttttccatgtcatcccaattgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60060 |
gaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaatcttttccatgtcatcccaattgct |
60159 |
T |
|
| Q |
201 |
aacaataccatgctcaattg |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
60160 |
aacaataccatgctcaattg |
60179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 4 - 218
Target Start/End: Complemental strand, 8689036 - 8688822
Alignment:
| Q |
4 |
agtgaaagaacggcctgaattgccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatcttctcacgattagcctttggattaagag |
103 |
Q |
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|||||||||||||||||||| || |||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||| ||||| || || |||| |
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| T |
8689036 |
agtgaaagaacggcctgaatagcaacatacatagcaggggtattaaaagtctcaaacatgatttgagtcatcttctcacgattggccttagggttgagag |
8688937 |
T |
|
| Q |
104 |
gagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaatcttttccatgtcatcccaattgctaac |
203 |
Q |
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| T |
8688936 |
gagcctcagttaaaagcactgggtgttcttctggggcgacacgaagctcattgtagaaggtgtgatgccaaatcttttccatgtcatcccagttgctaac |
8688837 |
T |
|
| Q |
204 |
aataccatgctcaat |
218 |
Q |
| |
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|| ||||| ||||| |
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| T |
8688836 |
gattccatgttcaat |
8688822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 37051162 - 37051363
Alignment:
| Q |
19 |
tgaattgccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatcttctcacgattagcctttggattaagaggagcttctgttaaga |
118 |
Q |
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||||| || |||||||||||||| | |||||| |||||||||||||| || ||||| ||||||||||||||||| ||||||||||| ||||| || | | |
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| T |
37051162 |
tgaatagcaacatacatagcaggagtattgaatgtctcaaacatgatctgagtcattttctcacgattagccttaggattaagaggtgcttcagtaagaa |
37051261 |
T |
|
| Q |
119 |
gaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaatcttttccatgtcatcccaattgctaacaataccatgctcaat |
218 |
Q |
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| || || || ||||| || || |||||||| ||||| ||||| ||||||||||| ||||| ||||| ||||||||||| |||||||| ||||||||||| |
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| T |
37051262 |
ggacagggtgttcttcaggagcaacacgaagttcattgtagaaagtatgatgccagatcttctccatatcatcccaattactaacaatcccatgctcaat |
37051361 |
T |
|
| Q |
219 |
tg |
220 |
Q |
| |
|
|| |
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|
| T |
37051362 |
tg |
37051363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 67379 - 67166
Alignment:
| Q |
7 |
gaaagaacggcctgaattgccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatcttctcacgattagcctttggattaagaggag |
106 |
Q |
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||||| || |||||||| || ||||||||||| || |||||||| ||||||||||| || || ||||| ||||||||||||||||| |||||||| || | |
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| T |
67379 |
gaaagcacagcctgaatggcaacatacatagctggagcattgaaggtctcaaacataatctgagtcattttctcacgattagccttaggattaagtggtg |
67280 |
T |
|
| Q |
107 |
cttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaatcttttccatgtcatcccaattgctaacaat |
206 |
Q |
| |
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|||| || | ||||| ||||| ||||| || || |||||||||||||| ||||| || |||||||| ||||||||||| |||||||| || |||||||| |
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| T |
67279 |
cttcagtgagaagaacaggatgttcttcaggagccacacgaagctcattgtagaaagtgtgatgccagatcttttccatatcatcccagttactaacaat |
67180 |
T |
|
| Q |
207 |
accatgctcaattg |
220 |
Q |
| |
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||||||||||||| |
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| T |
67179 |
tccatgctcaattg |
67166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 41387848 - 41387629
Alignment:
| Q |
1 |
tagagtgaaagaacggcctgaattgccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatcttctcacgattagcctttggattaa |
100 |
Q |
| |
|
||||| || |||||||||||||| || |||||||||||||| | ||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||| | |
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| T |
41387848 |
tagagcgatagaacggcctgaatagcaacatacatagcaggtgtgttgaatgtctcaaacataatttgtgtcattttctcacgattagcctttggattga |
41387749 |
T |
|
| Q |
101 |
gaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaatcttttccatgtcatcccaattgct |
200 |
Q |
| |
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| || ||||| || | | ||| || ||||| || ||||| ||||| || ||||| || |||||||||||||||||||| |||||||||||||| || || |
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| T |
41387748 |
gcggtgcttcagtgagcaaaaccgggtgctcctctggggccacacggagttcattgtaaaaggtatgatgccaaatcttctccatgtcatcccagttact |
41387649 |
T |
|
| Q |
201 |
aacaataccatgctcaattg |
220 |
Q |
| |
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||||||||||| ||||||| |
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| T |
41387648 |
cacaataccatgttcaattg |
41387629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 28 - 215
Target Start/End: Original strand, 1263001 - 1263188
Alignment:
| Q |
28 |
acatacatagcaggggcattgaaagtctcaaacatgatttgggtcatcttctcacgattagcctttggattaagaggagcttctgttaagagaactggat |
127 |
Q |
| |
|
|||||||| ||||| ||||||||||||| ||||| || ||||||||||| || | ||| || || ||||| || ||||| || || | || || || | |
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| T |
1263001 |
acatacattgcaggcacattgaaagtctcgaacataatctgggtcatcttttctctattggctttaggattgagtggagcctcagtaagaagcacagggt |
1263100 |
T |
|
| Q |
128 |
gctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaatcttttccatgtcatcccaattgctaacaataccatgctc |
215 |
Q |
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| T |
1263101 |
gttcttcgggagcaacacgaagctcattataaaatgtgtgatgccaaatcttttccatatcgtcccagttactaactataccatgctc |
1263188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 43647609 - 43647811
Alignment:
| Q |
16 |
gcctgaattgccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatcttctcacgattagcctttggattaagaggagcttctgtta |
115 |
Q |
| |
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||||| || ||||||||||| ||||| ||||||| ||||| |||||||||||||||||||| || | || |||||||||||||| ||||| || |||| |
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| T |
43647609 |
gcctggatggccacatacatggcaggcacattgaaggtctcgaacatgatttgggtcatcttttctctgttggcctttggattaagtggagcctcagtta |
43647708 |
T |
|
| Q |
116 |
agagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaatcttttccatgtcatcccaattgctaacaataccatgctc |
215 |
Q |
| |
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|| ||||| ||||| ||||| || ||||| | ||||| || || || |||||||| ||||| |||||||||||||| || || |||||||| ||||| |
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| T |
43647709 |
gaagtactgggtgctcctcgggagcaacacgcaattcattgtaaaatgtgtgatgccagatcttctccatgtcatcccagttactgacaataccgtgctc |
43647808 |
T |
|
| Q |
216 |
aat |
218 |
Q |
| |
|
||| |
|
|
| T |
43647809 |
aat |
43647811 |
T |
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