View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4804-Insertion-11 (Length: 256)
Name: NF4804-Insertion-11
Description: NF4804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4804-Insertion-11 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 6 - 256
Target Start/End: Original strand, 6214516 - 6214766
Alignment:
| Q |
6 |
cattattattaaataataacaaaaacaagcaatgttacatataaagaaagtgatattgataatgtctttgatgtgatattacattataaactttattacc |
105 |
Q |
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| T |
6214516 |
cattattattaaataataacaaaaacaagcattgttacacataaagaaagtgatattgataatgtctttgatgtgatattacattataaactttattacc |
6214615 |
T |
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| Q |
106 |
tgtacatccaaatgcttataccacttgatattaatccatttatagttggttgaatacttgctggactatctgtccaactcagatcactgaaaaagagcat |
205 |
Q |
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| T |
6214616 |
tgtacatccaaatgcttataccacttgatattaatccatttatagttggcagaatacttgctggactatctgtccaactcagatcactgaaaaagaccat |
6214715 |
T |
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| Q |
206 |
tagacacattaattcaggaaatactataacataattagtagtatagtatag |
256 |
Q |
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| T |
6214716 |
tagacacattaattcaggaaatactataacataattagtagtatagtatag |
6214766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 102 - 237
Target Start/End: Original strand, 6177104 - 6177239
Alignment:
| Q |
102 |
tacctgtacatccaaatgcttataccacttgatattaatccatttatagttggttgaatacttgctggactatctgtccaactcagatcactgaaaaaga |
201 |
Q |
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| T |
6177104 |
tacctgtatatccatatgcttataccacttgatattaatccatttatagttggtagaatacttgctggactatctgtccaactcagatcactgaaaaaga |
6177203 |
T |
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| Q |
202 |
gcattagacacattaattcaggaaatactataacat |
237 |
Q |
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| T |
6177204 |
ccattagacacattgattcaggaaatagtacaacat |
6177239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 102 - 211
Target Start/End: Original strand, 6206916 - 6207025
Alignment:
| Q |
102 |
tacctgtacatccaaatgcttataccacttgatattaatccatttatagttggttgaatacttgctggactatctgtccaactcagatcactgaaaaaga |
201 |
Q |
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| T |
6206916 |
tacctgtatatccatatgcttataccacttgatattaactgatttatagttggtagaatactagttggactatctgtccaacccacaccactgaaaaaga |
6207015 |
T |
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| Q |
202 |
gcattagaca |
211 |
Q |
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| T |
6207016 |
gcattagaca |
6207025 |
T |
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