View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4804-Insertion-12 (Length: 121)
Name: NF4804-Insertion-12
Description: NF4804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4804-Insertion-12 |
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| [»] chr8 (5 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 7e-59; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 7e-59
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 25548336 - 25548450
Alignment:
| Q |
7 |
accttcctgttcagtcgacgccgccgaggtagataggaaaggcagcccttgtcacaggtcgcctaaaaatcagtgatatatgacaggttgtatctttcta |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25548336 |
accttcctgttcagtcgacgccgccgaggtagataggaaaggcagcccttgtcacaggtcgcctaaaaatcagtgatatatgacaggttgtatctttcta |
25548435 |
T |
|
| Q |
107 |
ttgttttttgattaa |
121 |
Q |
| |
|
||||||||||||||| |
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|
| T |
25548436 |
ttgttttttgattaa |
25548450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 7e-56
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 2089 - 1976
Alignment:
| Q |
8 |
ccttcctgttcagtcgacgccgccgaggtagataggaaaggcagcccttgtcacaggtcgcctaaaaatcagtgatatatgacaggttgtatctttctat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2089 |
ccttcctgttcagtcgacgccgccgaggtagataggaaaggcagcccttgtcacaggtcgcctaaagatcagtgatatatgacaggttgtatctttctat |
1990 |
T |
|
| Q |
108 |
tgttttttgattaa |
121 |
Q |
| |
|
|||||||||||||| |
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|
| T |
1989 |
tgttttttgattaa |
1976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 31709342 - 31709414
Alignment:
| Q |
8 |
ccttcctgttcagtcgacgccgccgaggtagataggaaaggcagcccttgtcacaggtcgcctaaaaatcagt |
80 |
Q |
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|||||||| || ||||||||||||||| |||||||||||||||||||||||| | |||||||||| |||||| |
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|
| T |
31709342 |
ccttcctgctccgtcgacgccgccgagatagataggaaaggcagcccttgtcgtaagtcgcctaaatatcagt |
31709414 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 14673688 - 14673758
Alignment:
| Q |
8 |
ccttcctgttcagtcgacgccgccgaggtagataggaaaggcagcccttgtcacaggtcgcctaaaaatca |
78 |
Q |
| |
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|||||||| || ||||||||||||||| |||||||||||| ||||||||||| | |||||||||| |||| |
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| T |
14673688 |
ccttcctgctccgtcgacgccgccgagatagataggaaagccagcccttgtcgtaagtcgcctaaatatca |
14673758 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 18973608 - 18973679
Alignment:
| Q |
8 |
ccttcctgttcagtcgacgccgccgaggtagataggaaaggcagcccttgtcacaggtcgcctaaaaatcagt |
80 |
Q |
| |
|
|||||||| || ||||||||||||||| |||||||||||||||| ||||||| | |||||||||| |||||| |
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|
| T |
18973608 |
ccttcctgctccgtcgacgccgccgagatagataggaaaggcag-ccttgtcgtaagtcgcctaaatatcagt |
18973679 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 3e-58; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 20012201 - 20012088
Alignment:
| Q |
8 |
ccttcctgttcagtcgacgccgccgaggtagataggaaaggcagcccttgtcacaggtcgcctaaaaatcagtgatatatgacaggttgtatctttctat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20012201 |
ccttcctgttcagtcgacgccgccgaggtagataggaaaggcagcccttgtcacaggtcgcctaaaaatcagtgatatatgacaggttgtatctttctat |
20012102 |
T |
|
| Q |
108 |
tgttttttgattaa |
121 |
Q |
| |
|
|||||||||||||| |
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|
| T |
20012101 |
tgttttttgattaa |
20012088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 12208789 - 12208717
Alignment:
| Q |
8 |
ccttcctgttcagtcgacgccgccgaggtagataggaaaggcagcccttgtcacaggtcgcctaaaaatcagt |
80 |
Q |
| |
|
|||||||| || ||||||||||||||| |||||||||||||||||||||||| | |||||||||| |||||| |
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| T |
12208789 |
ccttcctgctcggtcgacgccgccgagatagataggaaaggcagcccttgtcgtaagtcgcctaaatatcagt |
12208717 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 19808095 - 19808024
Alignment:
| Q |
8 |
ccttcctgttcagtcgacgccgccgaggtagataggaaaggcagcccttgtcacaggtcgcctaaaaatcagt |
80 |
Q |
| |
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|||||||| || ||||||||||||||| |||||||||||||||| ||||||| | |||||||||| |||||| |
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| T |
19808095 |
ccttcctgctccgtcgacgccgccgagatagataggaaaggcag-ccttgtcgtaagtcgcctaaatatcagt |
19808024 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 2e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 15157798 - 15157685
Alignment:
| Q |
8 |
ccttcctgttcagtcgacgccgccgaggtagataggaaaggcagcccttgtcacaggtcgcctaaaaatcagtgatatatgacaggttgtatctttctat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15157798 |
ccttcctgttcagtcgacgccgccgaggtagataggaaaggcagcccttgtcactggtcgcctaaagatcagtgatatatgacaggttgtatctttctat |
15157699 |
T |
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| Q |
108 |
tgttttttgattaa |
121 |
Q |
| |
|
|||||||||||||| |
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| T |
15157698 |
tgttttttgattaa |
15157685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 4e-51; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 4e-51
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 22622316 - 22622203
Alignment:
| Q |
8 |
ccttcctgttcagtcgacgccgccgaggtagataggaaaggcagcccttgtcacaggtcgcctaaaaatcagtgatatatgacaggttgtatctttctat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22622316 |
ccttcctgttcagtcgacgccgccgaggtagataggaaaggcagcccttgttgcaggtcgcctaaaaatcagtgatatatgacaggttgtatctttctat |
22622217 |
T |
|
| Q |
108 |
tgttttttgattaa |
121 |
Q |
| |
|
||||||||||||| |
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|
| T |
22622216 |
ggttttttgattaa |
22622203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 34335576 - 34335463
Alignment:
| Q |
8 |
ccttcctgttcagtcgacgccgccgaggtagataggaaaggcagcccttgtcacaggtcgcctaaaaatcagtgatatatgacaggttgtatctttctat |
107 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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|
| T |
34335576 |
ccttcctgctccgtcgacgccgccgaggtagataggaaaggcagcccttgtcacaggtcgcctaaagatcagtgatatatggcaggttgtatctttctat |
34335477 |
T |
|
| Q |
108 |
tgttttttgattaa |
121 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
34335476 |
tgttttttgattaa |
34335463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 4282515 - 4282443
Alignment:
| Q |
8 |
ccttcctgttcagtcgacgccgccgaggtagataggaaaggcagcccttgtcacaggtcgcctaaaaatcagt |
80 |
Q |
| |
|
|||||||| || ||||||||||||||| |||||||||||||||||||||||| | ||| |||||| |||||| |
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|
| T |
4282515 |
ccttcctgctctgtcgacgccgccgagatagataggaaaggcagcccttgtcgtaagtcacctaaatatcagt |
4282443 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 98; Significance: 1e-48; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 135505 - 135392
Alignment:
| Q |
8 |
ccttcctgttcagtcgacgccgccgaggtagataggaaaggcagcccttgtcacaggtcgcctaaaaatcagtgatatatgacaggttgtatctttctat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||| |||||||||||||||||| |
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| T |
135505 |
ccttcctgttcagtcgacgccgccgaggtagataggaaaggcagcccttgttacaggtctcctaaagatcagtgatatatggcaggttgtatctttctat |
135406 |
T |
|
| Q |
108 |
tgttttttgattaa |
121 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
135405 |
tgttttttgattaa |
135392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 2e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 2e-46
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 8998733 - 8998846
Alignment:
| Q |
8 |
ccttcctgttcagtcgacgccgccgaggtagataggaaaggcagcccttgtcacaggtcgcctaaaaatcagtgatatatgacaggttgtatctttctat |
107 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||| |
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|
| T |
8998733 |
ccttcctgctccgtcgacgccgccgaggtagataggaaaggcagcccttgtcacaggtcgcctaaagatcagtgatagatggcaggttgtatctttctat |
8998832 |
T |
|
| Q |
108 |
tgttttttgattaa |
121 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8998833 |
tgttttttgattaa |
8998846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 5332254 - 5332195
Alignment:
| Q |
20 |
gtcgacgccgccgaggtagataggaaaggcagcccttgtcacaggtcgcctaaaaatcagt |
80 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||| | |||||||||| |||||| |
|
|
| T |
5332254 |
gtcgacgccgccgagatagataggaaaggcag-ccttgtcgtaagtcgcctaaatatcagt |
5332195 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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