View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4804-Insertion-13 (Length: 198)
Name: NF4804-Insertion-13
Description: NF4804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4804-Insertion-13 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 4e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 8 - 172
Target Start/End: Original strand, 54692836 - 54693000
Alignment:
| Q |
8 |
aattcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgtttgtagacaagatgttataatatttggtagtgtccttcaaatt |
107 |
Q |
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| T |
54692836 |
aattcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgtttgtagacaagatgttataatatttggtagtgcccttcaaatt |
54692935 |
T |
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| Q |
108 |
tgtcaaggctttggaaatggcctttttcactaccttaatttctagatatcaagaatttctttgcc |
172 |
Q |
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| T |
54692936 |
tgtcaaggctttggaaatggcctttttcactaccttaatttctagatatcaagaatttctttgcc |
54693000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 54700196 - 54700375
Alignment:
| Q |
10 |
ttcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgtttgtagacaagatgttataatatttggtagtgtccttcaaatttg |
109 |
Q |
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| T |
54700196 |
ttcaacatcttgtaataagctaatcaaagccact-----gtttgatggtcattgtttgtagataagatgttgctatgtttggtatttcccttcaaatttg |
54700290 |
T |
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| Q |
110 |
tcaaggctttggaaatggcctttttcactaccttaatttctagatatcaagaatttctttgcctctgctgtgagctccaatccacctcc |
198 |
Q |
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| T |
54700291 |
ccaaggctttggagatggcctttttcactacc----tttcttgatgtcatgaatttcttagcctctgcagtgagctccaatccatctcc |
54700375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 54688251 - 54688379
Alignment:
| Q |
10 |
ttcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgtttgtagacaagatgttataatatttggtagtgtccttcaaatttg |
109 |
Q |
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| T |
54688251 |
ttcaacatcttgtaataagttaatcaaagccact-----gtttgatggtctttgtttgtagataagatgttgctatttttggcatttcccttcaaattta |
54688345 |
T |
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| Q |
110 |
tcaaggctttggaaatggcctttttcactacctt |
143 |
Q |
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| T |
54688346 |
ccaaggttttggagattgactttctcactacctt |
54688379 |
T |
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