View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4804-Insertion-15 (Length: 175)
Name: NF4804-Insertion-15
Description: NF4804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4804-Insertion-15 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (5 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 11806979 - 11807147
Alignment:
| Q |
7 |
acattctttggaattgttttagcaaatggaaaaggatacctataagcacctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcacct |
106 |
Q |
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| T |
11806979 |
acattctttggaattgttttagcaaatggaaaaggatacctataagctcctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcacct |
11807078 |
T |
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| Q |
107 |
tcaaatttaatccaacttgtttagatttttccttagcattttcagcttcctctatctccatacttctta |
175 |
Q |
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| T |
11807079 |
tcaaatttaatccaacttgtttagatttttccttagcattttcagcttcctctatctccatacttctta |
11807147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 4e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 4e-55
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 44248061 - 44248229
Alignment:
| Q |
7 |
acattctttggaattgttttagcaaatggaaaaggatacctataagcacctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcacct |
106 |
Q |
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| T |
44248061 |
acattctttggaacccttttagcaaatggaaaaggattcatataagctcctgcatgaccatctggtctcaataatgccaactttgttatatcaagcacct |
44248160 |
T |
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| Q |
107 |
tcaaatttaatccaacttgtttagatttttccttagcattttcagcttcctctatctccatacttctta |
175 |
Q |
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| T |
44248161 |
ccaaatttaatccaatttgttgagcttttactttagcattttcagcttcctctatctcaatacttctta |
44248229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 2e-47; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 28 - 175
Target Start/End: Complemental strand, 15284478 - 15284331
Alignment:
| Q |
28 |
gcaaatggaaaaggatacctataagcacctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcaccttcaaatttaatccaacttgtt |
127 |
Q |
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| T |
15284478 |
gcaaatggaaaaggattcatataagcaccagcatgaccatctggtctcaacaatgccaattttgttatatcaagcacctctaaatttaatccaaattgtt |
15284379 |
T |
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| Q |
128 |
tagatttttccttagcattttcagcttcctctatctccatacttctta |
175 |
Q |
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| T |
15284378 |
tagcttttgccctagcattttccacttcctctatctcaacacttctta |
15284331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 15256766 - 15256839
Alignment:
| Q |
28 |
gcaaatggaaaaggatacctataagcacctgcatgaccatctggtctcaacaatgccaattttgttatatcaag |
101 |
Q |
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| T |
15256766 |
gcaaatggaaaagggtacatataaggacctggatgaccatctggtctcaacaatgccaatttagttacatcaag |
15256839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 15265294 - 15265357
Alignment:
| Q |
31 |
aatggaaaaggatacctataagcacctgcatgaccatctggtctcaacaatgccaattttgtta |
94 |
Q |
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| T |
15265294 |
aatggaaaaggattcatataaggacctggatgaccatctggtcttaacaaagccaattttgtta |
15265357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 15262983 - 15262929
Alignment:
| Q |
34 |
ggaaaaggatacctataagcacctgcatgaccatctggtctcaacaatgccaatt |
88 |
Q |
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| T |
15262983 |
ggaaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgccaatt |
15262929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 15287437 - 15287503
Alignment:
| Q |
28 |
gcaaatggaaaaggatacctataagcacctgcatgaccatctggtctcaacaatgccaattttgtta |
94 |
Q |
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| T |
15287437 |
gcaaatggaaaaggattcatgtaaggacctggatgaccatctggtctcaataatgccaatttagtta |
15287503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 9e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 9e-41
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 51383684 - 51383516
Alignment:
| Q |
7 |
acattctttggaattgttttagcaaatggaaaaggatacctataagcacctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcacct |
106 |
Q |
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|||| |||||||||| ||||||||||||||||||| | | || || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51383684 |
acatactttggaattccattagcaaatggaaaaggattcatgtaggctcctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcacct |
51383585 |
T |
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| Q |
107 |
tcaaatttaatccaacttgtttagatttttccttagcattttcagcttcctctatctccatacttctta |
175 |
Q |
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| T |
51383584 |
ccaaattaaatcccaattgttcagcttttgacttagcatttttcacttcctctatctcaatacttctta |
51383516 |
T |
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