View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4804-Insertion-3 (Length: 910)
Name: NF4804-Insertion-3
Description: NF4804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4804-Insertion-3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 788; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 788; E-Value: 0
Query Start/End: Original strand, 13 - 876
Target Start/End: Complemental strand, 4592101 - 4591240
Alignment:
| Q |
13 |
atttccaaaaacacacagcaagttataactagaaaaactaaatagccacaccaaaacagactaaggaggcagcatacaaagagaccaataaatacgattc |
112 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4592101 |
atttccaaaaatacacagcaagttataactagaaaaactaaagagccacaccaaaacagactaaggaggcagcatacaaagagaccaataaatacgattc |
4592002 |
T |
|
| Q |
113 |
tacatttcttccaattctttgattttgagtcaaagattattaaatgaaatattttgatgaaaactcctatattccaataacaaattgatacgaaaacaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4592001 |
tacatttcttccaattctttgattttgagtcaaagattattaaatgaaatattttgatgaaaactcctatattccaataacaaattgatacgaaaacaaa |
4591902 |
T |
|
| Q |
213 |
ttagccactgcgggatgagtaatatgtttgcactatggtgagaaccacgagcaaagcagctgcgacaattcctatgaatttccaaaccgtaggtatatgg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4591901 |
ttagccactgcgggatgagtaatatgtttgcactatggtgagaaccacgagcaaagcagctgcgacaattcctatgaatttccaaaccgtaggtatatgg |
4591802 |
T |
|
| Q |
313 |
tcacgtatcaaaactttgtaccaatttcgcccatagtacacataaatttcacaaattcgcctacattgatgccaagcacgtataggcaattttcgcagca |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| || |||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
4591801 |
tcacgtatcaaaactttgtaccaatttcgcccatagttcacaaaattttcactaattcgcctacattgatgccaagcacgtataggcaattttcgcaaca |
4591702 |
T |
|
| Q |
413 |
cttttgtgactttcatccccatatagtcatacacattcaaccttgcacaaatctcgctataactcaaatccatttgctcggctcctttggcaatcgtttg |
512 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4591701 |
cttttgtgactttcatccccatgtagtcatacacattcaaccttgcacaaatctcgctataactcaaatccatttgctcggctcctttggcaatcgtttg |
4591602 |
T |
|
| Q |
513 |
aaataatatcaacaaatcttcattgctcttgctcaactcatttacaataacgccttttttctggagcaattcaatgtcatgttcacaacatatcaaacca |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4591601 |
aaataatatcaacaaatcttcattgctcttgttcaactcatttacaataacaccttttttctgaagcaattcaatgtcatgttcacaacatatcaaacca |
4591502 |
T |
|
| Q |
613 |
ttaaagaaaagtgcataggatgtgtatttgcatctaatccaatttttgctttgctcccaaagcaatcaaattcctccacttcacttccgttgtttcttta |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4591501 |
ttaaagaaaagtgcataggatgtgtatttgcatctaatccaatttttgctttgctccc-aagcaatcaaattcctccacttcacttccgttgtttcttta |
4591403 |
T |
|
| Q |
713 |
atatatagcggcggaatattcaactctccataatcactaaaaccttatatcaaaatcaaatatatccaccaactcatgttgattttgatttgtgatattt |
812 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4591402 |
atatatagcggcggaatattcaactctccctaatcactaaaa-cttatatcaaaatcaaatatatccaccaactcatgttgattttgatttgtgatattt |
4591304 |
T |
|
| Q |
813 |
aatttagcagctcgaatcgttaccccagaagcccgaagcctggtagcacaatataacaattcta |
876 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| |
|
|
| T |
4591303 |
aatttagcagctcgaatcgttaccccagaagcacgaagctttgtagcacaatataacaattcta |
4591240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 129 - 820
Target Start/End: Complemental strand, 4555667 - 4554995
Alignment:
| Q |
129 |
ctttgattttgagtcaaagattattaaatgaaatattttgatgaaaactcctatattccaataacaaattgatacgaaaacaaattagccactgcgggat |
228 |
Q |
| |
|
|||||||| |||||||||||||| |||||| || |||||||| | || |||||||| ||||| |||| |||| | |||||||| |||||||| ||||| |
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|
| T |
4555667 |
ctttgattctgagtcaaagattaataaatgcaaaattttgattagaaatcctatatgccaattacaagttgagaataaaacaaactagccactacgggag |
4555568 |
T |
|
| Q |
229 |
gagtaatatgtttgcactatggtgagaaccacgagcaaagcagctgcgacaattcctatgaatttccaaaccgtaggtatatggtcacgtatcaaaactt |
328 |
Q |
| |
|
||| |||||||||||| || || || || | ||||| | || |||||| ||||||| ||||| |||||||||||||||||| ||||||||||||| | |
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|
| T |
4555567 |
gagcaatatgtttgcatgatagtaaggacgaggagcacaacaactgcgattattcctacgaatt-ccaaaccgtaggtatatgctcacgtatcaaaatat |
4555469 |
T |
|
| Q |
329 |
tgtaccaatttcgcccatagtacacataaatttcacaaattcgcctacattgatgccaagcacgtataggcaattttcgcagcacttttgtgactttcat |
428 |
Q |
| |
|
||||||| |||||||| ||||| ||| || | ||| |||| | ||||||||||||||||| | ||||| |||||||| | |||||||| |||||||| |
|
|
| T |
4555468 |
tgtaccagtttcgcccgtagtaaacacaactatcaaaaatacacctacattgatgccaagagcatatagccaattttctgaaaacttttgttactttcat |
4555369 |
T |
|
| Q |
429 |
ccccatatagtcatacacattcaaccttgcacaaatctcgctataactcaaatccatttgctcggctcctttggcaatcgtttgaaataatatcaacaaa |
528 |
Q |
| |
|
|||| | ||||||||||||||||| ||| ||||||||| ||||||||||||||||| ||||| |||| ||||||||| ||| | |
|
|
| T |
4555368 |
ccccttgcagtcatacacattcaactttgtacaaatctcactataactcaaatccatgtgctcagctcttttggcaat----------------aactca |
4555285 |
T |
|
| Q |
529 |
tcttcattgctcttgctcaactcatttacaataacgccttttttctggagcaattcaatgtcatgttcacaacatatcaaaccattaaagaaaagtgcat |
628 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| ||||||| ||| |||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4555284 |
acttcattggtcttgttcaactcatttacaataacccctttttcctgaagcatttcaatgtcatgctcacaacatatcaaaccattaaagaaaagtgcat |
4555185 |
T |
|
| Q |
629 |
aggatgtgtatttgcatctaatccaatttttgctttgctcccaaagcaatcaaattcctccacttcacttccgttgtttctttaatatatagcggcggaa |
728 |
Q |
| |
|
|||| |||||||||||| || ||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||| || | || |
|
|
| T |
4555184 |
aggaagtgtatttgcatttactccaaattttgctttgctccc-aagcaatcaaattcctccacttcacttccgttctttccttaatatatagtggtgaaa |
4555086 |
T |
|
| Q |
729 |
tattcaactctccataatcactaaaaccttatatcaaaatcaaatatatccaccaactcatgttgattttgatttgtgatatttaatttagc |
820 |
Q |
| |
|
| ||||||| ||| ||||||||||| || | |||||||||||| ||||||||||||| |||||| |||||||||| ||||||||||||| |
|
|
| T |
4555085 |
ttatcaactccccaaaatcactaaaa-ctcacatcaaaatcaaacatatccaccaacttctgttgagattgatttgtgctatttaatttagc |
4554995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 213 - 862
Target Start/End: Complemental strand, 4621433 - 4620789
Alignment:
| Q |
213 |
ttagccactgcgggatgagtaatatgtttgcactatggtgagaaccacgagcaaagcagctgcgacaattcctatgaatttccaaaccgtaggtatatgg |
312 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| |||||||| |||| ||||| ||||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
4621433 |
ttagtcactgcgggatgagtaatatgtctgcatgatggtgagtaccaggagcatagcagctgccacaattcctatgaatttccacacattaggtatatgg |
4621334 |
T |
|
| Q |
313 |
tcacgtatcaaaactttgtaccaatttcgcccatagtacacataaatttcacaaattcgcctacattgatgccaagcacgtataggcaattttcgcagca |
412 |
Q |
| |
|
|| |||||||||| || ||||| ||||| | ||||||| | || ||| ||| |||||||||||||||||| | | ||||| |||||| ||| || |
|
|
| T |
4621333 |
tcgcgtatcaaaatattataccagtttcgaacgtagtacataaggatctcaaaaactcgcctacattgatgccatgttctaataggtaatttttgcacca |
4621234 |
T |
|
| Q |
413 |
cttttgtgactttcatccccatatagtcatacacattcaaccttgcacaaatctcgctataactcaaatccatttgctcggctcctttggcaatcgtttg |
512 |
Q |
| |
|
| || ||||||||||| ||| | |||||||||||||||| | | |||||||| || ||| ||||||||||||| || || ||||| || | ||| || | |
|
|
| T |
4621233 |
ccttggtgactttcattcccttgtagtcatacacattcatcttcgcacaaatttcactaaaactcaaatccatatgttcagctccattcgaaattgtgcg |
4621134 |
T |
|
| Q |
513 |
aaataatatcaacaaatcttcattgctcttgctcaactcatttacaataacgccttttttctggagcaattcaatgtcatgttcacaacatatcaaacca |
612 |
Q |
| |
|
||||| | |||||||||||| || |||||| ||| ||||| ||||| || ||||||| || || |||||||||||||| ||||| |||||||||||| |
|
|
| T |
4621133 |
aaatagtgccaacaaatcttcgttactcttgttcatatcattcacaatgacacctttttcttgaagtaattcaatgtcatgctcacagcatatcaaacca |
4621034 |
T |
|
| Q |
613 |
ttaaagaaaagtgcataggatgtgtatttgcatctaatccaatttttgctttgctcccaaagcaatcaaattcctccacttcacttccgttgtttcttta |
712 |
Q |
| |
|
|| || ||||||||||| || ||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||| |||||||| || |
|
|
| T |
4621033 |
ttgaaaaaaagtgcataagaagtgcatttgcatctaatccaaattttgctttgctccc-aagcaatcaaattcctccacttaacttcagttgtttccttg |
4620935 |
T |
|
| Q |
713 |
atatatagcggcggaatattcaactctccataatcactaaaaccttatatcaaaatcaaatatatccaccaactcatgttgattttgatttgtgatattt |
812 |
Q |
| |
|
|||||||| || ||||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
4620934 |
atatatagtggtggaatatccaactctccagaatcactaaaa-cttatatcaaaatcaaacatatccaccaacttatgctgattttgatttgtgctattt |
4620836 |
T |
|
| Q |
813 |
aatttagcagctcgaatcgttaccccagaagcccgaagcctggtagcaca |
862 |
Q |
| |
|
||||| ||||||||| ||||||||||||| || ||| | |||||||| |
|
|
| T |
4620835 |
aattt---agctcgaattattaccccagaagcacggagctttgtagcaca |
4620789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 4e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 559 - 708
Target Start/End: Complemental strand, 14193359 - 14193211
Alignment:
| Q |
559 |
ataacgccttttttctggagcaattcaatgtcatgttcacaacatatcaaaccattaaagaaaagtgcataggatgtgtatttgcatctaatccaatttt |
658 |
Q |
| |
|
||||| ||||||| || |||||| |||||||| |||||| ||||||||||| || |||||||| ||||||||||| |||||||||||||| | ||| |
|
|
| T |
14193359 |
ataacccctttttcttgaagcaatccaatgtcagattcacagcatatcaaacctttgaagaaaagagcataggatgtatatttgcatctaatgttaattt |
14193260 |
T |
|
| Q |
659 |
tgctttgctcccaaagcaatcaaattcctccacttcacttccgttgtttc |
708 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14193259 |
tgctctgctccc-aagcaatcaaattcctccacctcacttccgttgtttc |
14193211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 583 - 713
Target Start/End: Complemental strand, 18522028 - 18521899
Alignment:
| Q |
583 |
tcaatgtcatgttcacaacatatcaaaccattaaagaaaagtgcataggatgtgtatttgcatctaatccaatttttgctttgctcccaaagcaatcaaa |
682 |
Q |
| |
|
||||||||||| | |||||||||||||||||| ||||| || ||||| || |||||||||||||| | |||| || | | || |||| ||||||||||| |
|
|
| T |
18522028 |
tcaatgtcatgcttacaacatatcaaaccattgaagaatagagcatatgaagtgtatttgcatcttacccaaattctattctgttccc-aagcaatcaaa |
18521930 |
T |
|
| Q |
683 |
ttcctccacttcacttccgttgtttctttaa |
713 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
18521929 |
ttcctccacttcacttccgttgtttccttaa |
18521899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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