View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4804-Insertion-4 (Length: 864)

Name: NF4804-Insertion-4
Description: NF4804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4804-Insertion-4
NF4804-Insertion-4
[»] chr2 (26 HSPs)
chr2 (37-864)||(8800282-8801105)
chr2 (386-466)||(32596012-32596092)
chr2 (345-471)||(33019135-33019262)
chr2 (386-464)||(5533017-5533095)
chr2 (318-466)||(6327052-6327202)
chr2 (291-367)||(15928518-15928594)
chr2 (424-471)||(16518837-16518884)
chr2 (430-546)||(9143040-9143154)
chr2 (386-471)||(33502258-33502340)
chr2 (434-473)||(40401620-40401659)
chr2 (424-466)||(680274-680316)
chr2 (425-471)||(15220840-15220886)
chr2 (489-539)||(15928371-15928421)
chr2 (424-469)||(1976845-1976890)
chr2 (422-471)||(10644660-10644709)
chr2 (364-471)||(43501123-43501229)
chr2 (394-471)||(44439283-44439360)
chr2 (289-353)||(10126019-10126083)
chr2 (388-464)||(42982567-42982643)
chr2 (424-471)||(4894136-4894183)
chr2 (411-470)||(44810421-44810480)
chr2 (291-336)||(3716750-3716795)
chr2 (492-541)||(13238927-13238976)
chr2 (424-473)||(28206736-28206785)
chr2 (424-469)||(42382399-42382444)
chr2 (491-547)||(42515950-42516007)
[»] chr6 (24 HSPs)
chr6 (288-471)||(4910830-4911014)
chr6 (291-471)||(25195345-25195524)
chr6 (346-471)||(3482026-3482152)
chr6 (395-471)||(957602-957678)
chr6 (388-460)||(17225875-17225947)
chr6 (289-466)||(28052872-28053052)
chr6 (386-471)||(46267-46354)
chr6 (491-547)||(3605728-3605784)
chr6 (424-471)||(3289804-3289850)
chr6 (424-471)||(34620945-34620992)
chr6 (424-471)||(34748382-34748429)
chr6 (346-471)||(5724609-5724735)
chr6 (411-473)||(8860550-8860612)
chr6 (386-471)||(29338576-29338659)
chr6 (428-461)||(947628-947661)
chr6 (394-471)||(1485125-1485202)
chr6 (346-466)||(16540087-16540208)
chr6 (411-471)||(882732-882792)
chr6 (424-471)||(8856366-8856413)
chr6 (489-539)||(21455946-21455997)
chr6 (422-471)||(434216-434265)
chr6 (291-336)||(2002580-2002625)
chr6 (291-336)||(2008453-2008498)
chr6 (490-539)||(32217399-32217448)
[»] chr8 (23 HSPs)
chr8 (296-471)||(37684335-37684511)
chr8 (289-451)||(13384653-13384816)
chr8 (308-471)||(32927834-32927998)
chr8 (308-460)||(38868439-38868593)
chr8 (385-471)||(26100125-26100211)
chr8 (428-471)||(9461517-9461560)
chr8 (423-474)||(27218821-27218872)
chr8 (385-471)||(35495010-35495096)
chr8 (491-541)||(41408266-41408316)
chr8 (434-471)||(43492216-43492253)
chr8 (364-471)||(32994221-32994329)
chr8 (491-539)||(36779467-36779515)
chr8 (491-542)||(29970878-29970929)
chr8 (424-471)||(32101132-32101179)
chr8 (423-471)||(32767445-32767495)
chr8 (346-459)||(36200120-36200237)
chr8 (425-471)||(2764448-2764494)
chr8 (385-471)||(4662882-4662968)
chr8 (424-470)||(18356069-18356115)
chr8 (424-469)||(13929678-13929723)
chr8 (424-473)||(32736521-32736570)
chr8 (285-334)||(32994341-32994390)
chr8 (402-471)||(38868780-38868849)
[»] chr5 (18 HSPs)
chr5 (356-464)||(6951291-6951400)
chr5 (308-455)||(31906201-31906349)
chr5 (291-466)||(18851066-18851242)
chr5 (311-466)||(42858052-42858209)
chr5 (288-336)||(22226351-22226399)
chr5 (491-542)||(2868332-2868383)
chr5 (425-471)||(14671085-14671131)
chr5 (402-471)||(9184994-9185063)
chr5 (349-456)||(9818717-9818826)
chr5 (309-471)||(10860333-10860497)
chr5 (434-472)||(11577599-11577637)
chr5 (411-473)||(34443021-34443083)
chr5 (305-462)||(36289974-36290132)
chr5 (424-469)||(12208814-12208859)
chr5 (388-449)||(15368396-15368457)
chr5 (438-471)||(36927666-36927699)
chr5 (494-539)||(38265061-38265106)
chr5 (364-471)||(38845441-38845550)
[»] chr4 (23 HSPs)
chr4 (291-471)||(35064988-35065169)
chr4 (363-471)||(8604601-8604710)
chr4 (386-466)||(32818354-32818434)
chr4 (385-473)||(53713538-53713626)
chr4 (310-464)||(53913563-53913718)
chr4 (288-471)||(33456296-33456478)
chr4 (424-477)||(55927743-55927796)
chr4 (412-464)||(43868183-43868235)
chr4 (385-465)||(45011894-45011974)
chr4 (394-450)||(52965854-52965910)
chr4 (424-463)||(16552014-16552053)
chr4 (385-471)||(21691191-21691277)
chr4 (311-455)||(39386578-39386723)
chr4 (411-463)||(44278954-44279006)
chr4 (309-470)||(22683806-22683969)
chr4 (493-539)||(1616515-1616561)
chr4 (491-541)||(5025582-5025632)
chr4 (425-471)||(33843771-33843817)
chr4 (491-541)||(39000530-39000580)
chr4 (426-460)||(42694502-42694536)
chr4 (289-334)||(2326928-2326973)
chr4 (291-336)||(21691335-21691380)
chr4 (291-336)||(49138950-49138995)
[»] scaffold0168 (1 HSPs)
scaffold0168 (291-466)||(31751-31930)
[»] chr3 (23 HSPs)
chr3 (386-466)||(31708223-31708303)
chr3 (386-471)||(31013039-31013124)
chr3 (394-468)||(40147832-40147906)
chr3 (491-547)||(44225633-44225689)
chr3 (394-469)||(35264392-35264467)
chr3 (411-473)||(43661885-43661947)
chr3 (382-451)||(52364068-52364137)
chr3 (496-541)||(53078431-53078476)
chr3 (427-474)||(4401350-4401397)
chr3 (386-457)||(4526153-4526224)
chr3 (434-469)||(5406973-5407008)
chr3 (424-471)||(35253446-35253493)
chr3 (436-470)||(7262885-7262919)
chr3 (489-539)||(21261223-21261273)
chr3 (386-440)||(39054105-39054159)
chr3 (424-474)||(46551244-46551294)
chr3 (381-471)||(46853513-46853603)
chr3 (289-335)||(52141361-52141407)
chr3 (434-471)||(30958105-30958142)
chr3 (434-471)||(30973917-30973954)
chr3 (395-471)||(33791984-33792061)
chr3 (442-471)||(41591332-41591361)
chr3 (402-451)||(54173314-54173363)
[»] chr1 (28 HSPs)
chr1 (346-471)||(38797609-38797734)
chr1 (308-471)||(28083867-28084031)
chr1 (387-471)||(34915088-34915172)
chr1 (386-468)||(3016183-3016265)
chr1 (349-472)||(1514326-1514450)
chr1 (385-471)||(7524133-7524219)
chr1 (411-464)||(2555947-2556000)
chr1 (385-462)||(11049270-11049347)
chr1 (411-456)||(30850393-30850438)
chr1 (287-455)||(47321902-47322070)
chr1 (491-547)||(4347066-4347122)
chr1 (424-471)||(30557561-30557608)
chr1 (424-471)||(35961427-35961474)
chr1 (289-336)||(36780232-36780279)
chr1 (386-460)||(14644718-14644792)
chr1 (434-471)||(213260-213297)
chr1 (426-471)||(18325087-18325132)
chr1 (345-448)||(7790644-7790748)
chr1 (402-454)||(24587949-24588001)
chr1 (433-468)||(1416203-1416238)
chr1 (412-459)||(28267900-28267947)
chr1 (424-471)||(32370010-32370057)
chr1 (303-464)||(3416017-3416179)
chr1 (291-333)||(30557441-30557483)
chr1 (426-464)||(47053465-47053503)
chr1 (424-473)||(1233364-1233413)
chr1 (434-471)||(24697577-24697614)
chr1 (434-471)||(48548993-48549030)
[»] chr7 (21 HSPs)
chr7 (294-541)||(28724963-28725209)
chr7 (346-471)||(22195844-22195970)
chr7 (434-471)||(40561737-40561774)
chr7 (385-466)||(42816452-42816533)
chr7 (387-471)||(40491600-40491684)
chr7 (404-463)||(39956266-39956325)
chr7 (402-471)||(25156237-25156306)
chr7 (394-471)||(27571891-27571968)
chr7 (491-547)||(31625560-31625616)
chr7 (411-459)||(32295230-32295278)
chr7 (435-471)||(45557435-45557471)
chr7 (424-471)||(17111904-17111951)
chr7 (411-470)||(40795969-40796028)
chr7 (364-454)||(41386811-41386902)
chr7 (392-471)||(41788343-41788422)
chr7 (424-474)||(9480585-9480635)
chr7 (433-471)||(12306791-12306829)
chr7 (289-359)||(29163417-29163487)
chr7 (493-547)||(32683694-32683748)
chr7 (385-463)||(35772278-35772356)
chr7 (444-474)||(41010035-41010065)
[»] scaffold0361 (1 HSPs)
scaffold0361 (424-471)||(14093-14140)


Alignment Details
Target: chr2 (Bit Score: 488; Significance: 0; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 37 - 864
Target Start/End: Complemental strand, 8801105 - 8800282
Alignment:
Q  37 gttggagattttttgtgttcaatcggctgatgtttgcttgcatgcttttcaatttggtg-tttgtttagttggagtatttgtttaagaaggatatactca 135  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||| ||||||||||||||    
T  8801105 gttggagattttttctgttcaatcggctgatgtttgcttgcatgtttttcaatttggtggtttgtttagttgtagtatttgtttacgaaggatatactca 8801006  T
Q  136 tcattgcttgtatcgtatgtgattttgttggtcattt----ggaagaagtgtaactcgtaggtttgctgcaacaaagagttgaatttagatgttacaaga 231  Q
    |||||||||||||     |||||||||||||   |||    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8801005 tcattgcttgtat-----gtgattttgttggatgttttattggaagaagtgtaactcgtaggtttgctgtaacaaagagttgaatttagatgttacaaga 8800911  T
Q  232 tcgtattaaacttttcttttggtgtannnnnnnncttcttcatatttttaaagggttataattgattttggaggtatagaattgattctgatatgtttgg 331  Q
    ||||||||||||||||| ||||||||         || ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8800910 tcgtattaaacttttctcttggtgtatttt-----ttgttc-tatttttagagggttataattgattttggaggtatagaattgattctgatatgtttgg 8800817  T
Q  332 ttgttattgattgtaattgattatgtctctataattgattatacttgagatatgatttgtaacttttgaatctataatcgattttaacatataaatttat 431  Q
    ||||| |||||| |||||||  ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||    
T  8800816 ttgttgttgattataattgaccatgtctccataattgattatatttgagatatgatttgtaacttttgaatctataattgattttaatatacaaatttat 8800717  T
Q  432 aattcaactcacttttacatgaatgtatccaaacataaattacatttnnnnnnnnnnttacttttaactaaaatcaattctacaaaattgattatatcaa 531  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||          |||||||||| ||||||||||||||||||||||||||||||||    
T  8800716 aattcaactcacttttacatgaacgtatccaaacataaattacatttttaaaaaaaattacttttaattaaaatcaattctacaaaattgattatatcaa 8800617  T
Q  532 aatcaattttttccac---gcaaccaaatatacgtttgatggtggttgaaatctcaagaaccgcatannnnnnnnacatttccattcgtgatggaataac 628  Q
    ||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||| ||||        ||||||||||||||||||||||||     
T  8800616 aatcaattttttccacaacgcaaccaaatatacgtttggtggtggttgaaatctcaagaaccacatattttttt-acatttccattcgtgatggaataat 8800518  T
Q  629 ccattagtatgtattgattatgccacccatgtaacgtcgtgtctcaaaaacttgtagttatgatattatgtgtggcgtgacatcgacttaaacaaatcac 728  Q
    |||||||| |||||||||||||||||| || ||| || ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  8800517 ccattagtctgtattgattatgccacc-atataatgttgtgtctcaaaaacttgtagttatgatattatgtgtggggtgacatcgatttaaacaaatcac 8800419  T
Q  729 gctatcacttaaaataacacatcaacacatctaataaaactaattaac-gagaaacattttgattgacgtaaggacatttagggggataattttatgttt 827  Q
    | ||||||||||| ||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||   ||||||||| ||||||||||||||    
T  8800418 gatatcacttaaattaacacatcaacacatctaataaaattaattaacaaagaaacattttgattgacgtaagacaatttaggggaataattttatgttt 8800319  T
Q  828 cat-aatttcgtgttcaaaattaacaattacattttca 864  Q
    ||| ||||| |||||||||| |||||||||||||||||    
T  8800318 cataaatttagtgttcaaaa-taacaattacattttca 8800282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 386 - 466
Target Start/End: Original strand, 32596012 - 32596092
Alignment:
Q  386 atttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaaca 466  Q
    ||||||||||||||| |||| ||| |||||| ||||| ||||| |||||||||||||||||||||| ||| ||||||||||    
T  32596012 atttgtaacttttgattctaaaattgatttttacatacaaattcataattcaactcacttttacataaatatatccaaaca 32596092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 345 - 471
Target Start/End: Complemental strand, 33019262 - 33019135
Alignment:
Q  345 taattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcac 443  Q
    ||||||||| || ||||| ||||||||||| |||| | ||  ||||||| ||||||  | || ||| |||||| ||| ||||||||||| ||||||||||    
T  33019262 taattgattctgcctctagaattgattatatttgaagctagaatttgtagcttttggttttagaattgattttcacacataaatttatagttcaactcac 33019163  T
Q  444 ttttacatgaatgtatccaaacataaat 471  Q
    ||||||||||||| ||||||||| ||||    
T  33019162 ttttacatgaatgcatccaaacacaaat 33019135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 386 - 464
Target Start/End: Complemental strand, 5533095 - 5533017
Alignment:
Q  386 atttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaa 464  Q
    ||||||| ||||||| |||  ||| ||||| |||| |||||||||||||||||||||| |||||||||| |||||||||    
T  5533095 atttgtagcttttgattcttaaattgatttaaacacataaatttataattcaactcacatttacatgaacgtatccaaa 5533017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 318 - 466
Target Start/End: Complemental strand, 6327202 - 6327052
Alignment:
Q  318 tctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttgaga-tatgatttgtaacttttgaatctataatcgatttt 416  Q
    ||||| ||||||||||||| ||||||  |||||||||||| |||| |||||||| ||||||| | ||  |||||||  |||||| |||| |||  ||| |    
T  6327202 tctgacatgtttggttgttgttgattaaaattgattatgtttctagaattgattctacttgaaactaaaatttgtagtttttgattctaaaattaattct 6327103  T
Q  417 aacatataaatttata-attcaactcacttttacatgaatgtatccaaaca 466  Q
    |||||||||||||| |  ||||||||||||||| | | ||| |||||||||    
T  6327102 aacatataaatttaaagtttcaactcacttttagacggatgcatccaaaca 6327052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 291 - 367
Target Start/End: Complemental strand, 15928594 - 15928518
Alignment:
Q  291 aattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataatt 367  Q
    |||||||| ||||||| ||||||||||| ||| ||||||||||||| |||| |  |||||||||| |||||||||||    
T  15928594 aattgattctggaggtgtagaattgattttgacatgtttggttgttgttgagtagaattgattatatctctataatt 15928518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 424 - 471
Target Start/End: Original strand, 16518837 - 16518884
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  16518837 aaatttatagttcaactcacttttacatgaatgtatccaaacacaaat 16518884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 430 - 546
Target Start/End: Original strand, 9143040 - 9143154
Alignment:
Q  430 ataattcaactcacttttacatgaatgtatccaaacataaattacatttnnnnnnnnnnttacttttaactaaaatcaattctacaaaattgattatatc 529  Q
    |||||||||||||| ||||||||||||||| |||||| |||   |||||          |||| |||||||||||||||||||||| |||  ||| |||     
T  9143040 ataattcaactcacatttacatgaatgtattcaaacaaaaac--catttttagtcaaaattacatttaactaaaatcaattctacataatcaattttatt 9143137  T
Q  530 aaaatcaattttttcca 546  Q
    |||||||||||||||||    
T  9143138 aaaatcaattttttcca 9143154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 386 - 471
Target Start/End: Original strand, 33502258 - 33502340
Alignment:
Q  386 atttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||||||||||| |||| ||| |||||| ||| | | ||||||| ||||||||||||||||   |||||||||||||| ||||    
T  33502258 atttgtaacttttgattctaaaattgatttttacacacatatttatagttcaactcacttttac---aatgtatccaaacacaaat 33502340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 434 - 473
Target Start/End: Complemental strand, 40401659 - 40401620
Alignment:
Q  434 ttcaactcacttttacatgaatgtatccaaacataaatta 473  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  40401659 ttcaactgacttttacatgaatgtatccaaacataaatta 40401620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 424 - 466
Target Start/End: Complemental strand, 680316 - 680274
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaaca 466  Q
    ||||||| |||||||||||||||||||||||||||| ||||||    
T  680316 aaatttagaattcaactcacttttacatgaatgtatgcaaaca 680274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 471
Target Start/End: Complemental strand, 15220886 - 15220840
Alignment:
Q  425 aatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||    
T  15220886 aatttattgttcaactcactttaacatgaatgtatccaaacataaat 15220840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 489 - 539
Target Start/End: Complemental strand, 15928421 - 15928371
Alignment:
Q  489 ttacttttaactaaaatcaattctacaaaattgattatatcaaaatcaatt 539  Q
    ||||||||||| ||||||||||||||| |||| |||||| |||||||||||    
T  15928421 ttacttttaaccaaaatcaattctacagaattaattataccaaaatcaatt 15928371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 469
Target Start/End: Complemental strand, 1976890 - 1976845
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataa 469  Q
    ||||||||  || |||||||||||||||||||||||||||||||||    
T  1976890 aaatttattgttgaactcacttttacatgaatgtatccaaacataa 1976845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 422 - 471
Target Start/End: Original strand, 10644660 - 10644709
Alignment:
Q  422 ataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||||||| ||||||||||||||| || ||||||||||||| |||||    
T  10644660 ataaatttatagttcaactcacttttatataaatgtatccaaacttaaat 10644709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 364 - 471
Target Start/End: Original strand, 43501123 - 43501229
Alignment:
Q  364 aattgattatacttgaga-tatgatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatcca 462  Q
    |||||||| ||||||| | || |||||||| ||||||| | || ||| |||| ||||| | ||  ||||||||||||||| |||||||||||||||| ||    
T  43501123 aattgattctacttgaaactaggatttgtagcttttgattttagaattgattctaacacaaaa--ttataattcaactcagttttacatgaatgtataca 43501220  T
Q  463 aacataaat 471  Q
    |||| ||||    
T  43501221 aacacaaat 43501229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 471
Target Start/End: Original strand, 44439283 - 44439360
Alignment:
Q  394 cttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||| |||| ||| ||||||||||   ||||||||  |||||||||||||||||| ||  |||||||||||||||    
T  44439283 cttttgattctaaaattgattttaacactcaaatttattgttcaactcacttttacataaacatatccaaacataaat 44439360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 289 - 353
Target Start/End: Original strand, 10126019 - 10126083
Alignment:
Q  289 ataattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgatt 353  Q
    ||||||||||| |||| ||| |||||||||||||||| |||||||||| | || || ||||||||    
T  10126019 ataattgatttgggagatattgaattgattctgatatatttggttgttgtcgaatgaaattgatt 10126083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 388 - 464
Target Start/End: Original strand, 42982567 - 42982643
Alignment:
Q  388 ttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaa 464  Q
    ||||| ||||||| || | ||| |||||| ||| | ||||||||  | |||||||||||||||||||||||||||||    
T  42982567 ttgtagcttttgattccagaattgatttttacacacaaatttattttacaactcacttttacatgaatgtatccaaa 42982643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 424 - 471
Target Start/End: Complemental strand, 4894183 - 4894136
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||||| |||||| ||||||||| ||||||||||| ||||||||||    
T  4894183 aaatttattattcaagtcacttttaaatgaatgtatctaaacataaat 4894136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 411 - 470
Target Start/End: Original strand, 44810421 - 44810480
Alignment:
Q  411 gattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaa 470  Q
    |||||||||||  |||||||| |||||| |||||||||  ||||| ||||||||||||||    
T  44810421 gattttaacattcaaatttatcattcaagtcacttttatttgaatatatccaaacataaa 44810480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 3716795 - 3716750
Alignment:
Q  291 aattgattttggaggtatagaattgattctgatatgtttggttgtt 336  Q
    |||||||||| ||||||||||||| ||||||| || ||||||||||    
T  3716795 aattgattttagaggtatagaattaattctgacatatttggttgtt 3716750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 492 - 541
Target Start/End: Original strand, 13238927 - 13238976
Alignment:
Q  492 cttttaactaaaatcaattctacaaaattgattatatcaaaatcaatttt 541  Q
    ||||||||||||||||||| ||||||||  |||  |||||||||||||||    
T  13238927 cttttaactaaaatcaattttacaaaatgaattcaatcaaaatcaatttt 13238976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 473
Target Start/End: Original strand, 28206736 - 28206785
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataaatta 473  Q
    |||||||| |||||||  ||||||||||||||||| | ||||||||||||    
T  28206736 aaatttattattcaacaaacttttacatgaatgtacctaaacataaatta 28206785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 469
Target Start/End: Complemental strand, 42382444 - 42382399
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataa 469  Q
    |||||||||||||| ||||||||| ||| ||| |||||||||||||    
T  42382444 aaatttataattcacctcacttttccataaatttatccaaacataa 42382399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 547
Target Start/End: Complemental strand, 42516007 - 42515950
Alignment:
Q  491 acttttaactaaaatcaattcta-caaaattgattatatcaaaatcaattttttccac 547  Q
    ||||||||||||||||||||||  |||| |  |||||||||||||||||||| |||||    
T  42516007 acttttaactaaaatcaattctctcaaactcaattatatcaaaatcaattttctccac 42515950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 7e-33; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 288 - 471
Target Start/End: Original strand, 4910830 - 4911014
Alignment:
Q  288 tataattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatga 386  Q
    ||||||||||| || | || ||||||||||||||| ||||||||||||  |  |||  |||||||| || ||| | |||||||| ||||||| | |||||    
T  4910830 tataattgattctgaatgtgtagaattgattctgacatgtttggttgtcgtcaattagaattgattctgcctcaaaaattgattctacttgaagctatga 4910929  T
Q  387 tttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||| ||||||| |||| ||| |||||| ||||| ||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  4910930 tttgtagcttttgattctagaattgattttcacatacaaatttatagttcgactcacttttacataaatgtatccaaacataaat 4911014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 291 - 471
Target Start/End: Complemental strand, 25195524 - 25195345
Alignment:
Q  291 aattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttgagatatgatttg 390  Q
    |||||||| |||| || || |||||||||||| ||||||||||| ||| || | ||||||||| || |||   |||||||| ||||||| |   ||||||    
T  25195524 aattgattctggatgtgtataattgattctgacatgtttggttgctatcgagtataattgattctgcctccggaattgattctacttga-agcggatttg 25195426  T
Q  391 taacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||  |||| | |||||||| |||||| | | | ||||||| |||||||||||||||||||| |||||||||||||| ||||    
T  25195425 tagtttttcattctataattgattttcatacacaaatttacaattcaactcacttttacataaatgtatccaaacacaaat 25195345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 346 - 471
Target Start/End: Original strand, 3482026 - 3482152
Alignment:
Q  346 aattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcact 444  Q
    |||||||| ||||| || |||||||||||||||| | || |||||||| | ||||| | || ||| |||||| ||| | || |||||| ||||||| |||    
T  3482026 aattgattctgtctttagaattgattatacttgaagttaagatttgtagcctttgattttagaattgattttcacacacaagtttatagttcaacttact 3482125  T
Q  445 tttacatgaatgtatccaaacataaat 471  Q
    ||||||||||||||| |||||| ||||    
T  3482126 tttacatgaatgtattcaaacacaaat 3482152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 395 - 471
Target Start/End: Complemental strand, 957678 - 957602
Alignment:
Q  395 ttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||| || |||||||||||| ||| | ||| ||| |||| |||||| ||||||||||||||||||||||||||||    
T  957678 ttttgattccataatcgatttttacacacaaacttaaaatttaactcatttttacatgaatgtatccaaacataaat 957602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 388 - 460
Target Start/End: Original strand, 17225875 - 17225947
Alignment:
Q  388 ttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatc 460  Q
    ||||| ||||||| |||| ||| |||||| ||||| ||||||||| ||||||||| |||||||||||||||||    
T  17225875 ttgtagcttttgattctagaattgatttttacatacaaatttatagttcaactcagttttacatgaatgtatc 17225947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 289 - 466
Target Start/End: Original strand, 28052872 - 28053052
Alignment:
Q  289 ataattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttg-agatatgat 387  Q
    ||||||||||  | || |||| |||||||||||| ||||||  |||||||  | | ||||||||| ||||| || ||||||||||||||| |||||  ||    
T  28052872 ataattgattcagaagttataaaattgattctgacatgtttaattgttatcaagtataattgattgtgtctatagaattgattatacttgaagatagaat 28052971  T
Q  388 ttgtaacttttgaatctataatcgattttaacatat--aaatttataattcaactcacttttacatgaatgtatccaaaca 466  Q
    |||||  | || | |||| ||| |||||| ||||||  | ||||||| || || |||||||||||| |||||||| |||||    
T  28052972 ttgtagttattaattctaaaattgattttcacatatacatatttatagtttaagtcacttttacataaatgtatcaaaaca 28053052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 386 - 471
Target Start/End: Complemental strand, 46354 - 46267
Alignment:
Q  386 atttgtaacttttgaatctataatcgattttaacatataaattt--ataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||| ||||||| |||| ||| |||| ||||| | ||||||  |||||||||||||||||| || ||||||||||||||| ||||    
T  46354 atttgtagcttttgattctagaatagattctaacaaacaaatttttataattcaactcacttttccacgaatgtatccaaacacaaat 46267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 547
Target Start/End: Complemental strand, 3605784 - 3605728
Alignment:
Q  491 acttttaactaaaatcaattctacaaaattgattatatcaaaatcaattttttccac 547  Q
    ||||||||  |||||||||||||||||||  |||||||||||||||||||| |||||    
T  3605784 acttttaatcaaaatcaattctacaaaatcaattatatcaaaatcaattttgtccac 3605728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 424 - 471
Target Start/End: Original strand, 3289804 - 3289850
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||    
T  3289804 aaatttataattcaactcacttttacat-aatgtatccaaacacaaat 3289850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 424 - 471
Target Start/End: Original strand, 34620945 - 34620992
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||||  |||||||||||||||||| |||||||||||||||||||    
T  34620945 aaatttatttttcaactcacttttacataaatgtatccaaacataaat 34620992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 424 - 471
Target Start/End: Original strand, 34748382 - 34748429
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||||  |||||||||||||||||| |||||||||||||||||||    
T  34748382 aaatttatttttcaactcacttttacataaatgtatccaaacataaat 34748429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 346 - 471
Target Start/End: Complemental strand, 5724735 - 5724609
Alignment:
Q  346 aattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcact 444  Q
    |||||||| || ||| | |||||||| ||||||| | || |||||||||||||| | |||||||| |||||| ||| | |||| ||| ||| ||||||||    
T  5724735 aattgattttgcctccaaaattgattctacttgaagctaggatttgtaactttttattctataattgatttttacacacaaatatatcatttaactcact 5724636  T
Q  445 tttacatgaatgtatccaaacataaat 471  Q
    |||| |||||  ||| |||||| ||||    
T  5724635 tttatatgaacatattcaaacacaaat 5724609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 411 - 473
Target Start/End: Original strand, 8860550 - 8860612
Alignment:
Q  411 gattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaatta 473  Q
    |||||| ||| ||||||||||  |||||||||||||| |||||||||||| ||||| ||||||    
T  8860550 gattttgacacataaatttatggttcaactcacttttgcatgaatgtatctaaacacaaatta 8860612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 386 - 471
Target Start/End: Complemental strand, 29338659 - 29338576
Alignment:
Q  386 atttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||||||| ||| | || ||| |||| |||||||  ||||| |||||||| |||||||||||| ||| |||||||||||||||    
T  29338659 atttgtaacttatgattttagaattgattctaacata--aatttttaattcaattcacttttacataaatatatccaaacataaat 29338576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 428 - 461
Target Start/End: Original strand, 947628 - 947661
Alignment:
Q  428 ttataattcaactcacttttacatgaatgtatcc 461  Q
    ||||||||||||||||||||||||||||||||||    
T  947628 ttataattcaactcacttttacatgaatgtatcc 947661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 471
Target Start/End: Complemental strand, 1485202 - 1485125
Alignment:
Q  394 cttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||| |||| ||| ||||||||||   ||||||||  |||||||||||||||||| | ||||||||||| |||||    
T  1485202 cttttgattctagaattgattttaacactcaaatttattgttcaactcacttttacataagtgtatccaaacgtaaat 1485125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 346 - 466
Target Start/End: Original strand, 16540087 - 16540208
Alignment:
Q  346 aattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcact 444  Q
    |||||||| |||||| | |||||||| ||||||| | || |||||||| ||||||| | |  ||| || ||| || || | ||||||| || ||||||||    
T  16540087 aattgattctgtctccaaaattgattctacttgaagctaggatttgtagcttttgattattgaattgagtttcacttacatatttatagttaaactcact 16540186  T
Q  445 tttacatgaatgtatccaaaca 466  Q
    ||||||| ||||||||||||||    
T  16540187 tttacatcaatgtatccaaaca 16540208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 411 - 471
Target Start/End: Original strand, 882732 - 882792
Alignment:
Q  411 gattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||| ||||  ||||||||  || ||||||||||| |||||||||||||||||||||||    
T  882732 gatttttacattcaaatttattgtttaactcacttttgcatgaatgtatccaaacataaat 882792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 424 - 471
Target Start/End: Original strand, 8856366 - 8856413
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||||  ||||||||||||| ||||||||||||||||||| ||||    
T  8856366 aaatttatgtttcaactcactttcacatgaatgtatccaaacacaaat 8856413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 539
Target Start/End: Original strand, 21455946 - 21455997
Alignment:
Q  489 ttacttttaactaaaatcaattc-tacaaaattgattatatcaaaatcaatt 539  Q
    ||||||||||||||||||||||| |||||| |  ||||||||||||||||||    
T  21455946 ttacttttaactaaaatcaattcttacaaactcaattatatcaaaatcaatt 21455997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 422 - 471
Target Start/End: Complemental strand, 434265 - 434216
Alignment:
Q  422 ataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||||| | ||||||||||||||||| |||| |||||||||| ||||    
T  434265 ataaatttaaatttcaactcacttttacacgaatatatccaaacacaaat 434216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 2002625 - 2002580
Alignment:
Q  291 aattgattttggaggtatagaattgattctgatatgtttggttgtt 336  Q
    |||||||||||||||  ||||||||||| ||| |||||||||||||    
T  2002625 aattgattttggaggcgtagaattgattttgacatgtttggttgtt 2002580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 2008498 - 2008453
Alignment:
Q  291 aattgattttggaggtatagaattgattctgatatgtttggttgtt 336  Q
    |||||||||||||||| |||||||| |||||| ||||||| |||||    
T  2008498 aattgattttggaggtgtagaattgtttctgacatgtttgattgtt 2008453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 539
Target Start/End: Original strand, 32217399 - 32217448
Alignment:
Q  490 tacttttaactaaaatcaattctacaaaattgattatatcaaaatcaatt 539  Q
    ||||||||| |||||||||||||||| |||| ||| ||||||||| ||||    
T  32217399 tacttttaattaaaatcaattctacataattcattctatcaaaataaatt 32217448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 4e-28; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 296 - 471
Target Start/End: Original strand, 37684335 - 37684511
Alignment:
Q  296 attttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatgatttgtaac 394  Q
    ||||||||||| || ||||||||| || ||||||||||||| | || |  |||||||| |||||| | |||||||| ||||||| | || |||||||  |    
T  37684335 attttggaggtgtaaaattgattccgaaatgtttggttgttgtggagtagaattgattttgtctccagaattgattctacttgaagttaggatttgtggc 37684434  T
Q  395 ttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||| |||| ||| ||||||||   | |||||||||||||||||||||||||||| |||||||||||||| ||||    
T  37684435 ttttgattctaaaattgattttaatgcaaaaatttataattcaactcacttttacataaatgtatccaaacacaaat 37684511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 289 - 451
Target Start/End: Complemental strand, 13384816 - 13384653
Alignment:
Q  289 ataattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttg-agatatgat 387  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||| | || |  ||||  || | |||| | |||||||| || ||| || ||  ||    
T  13384816 ataattgattttggaggtgtagaattgattctgacatgtttggttgttgtcgagtcgaatttgttctttctccaaaattgattctatttgaagctaaaat 13384717  T
Q  388 ttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacat 451  Q
    ||||| ||||||| |||| ||| |||||| ||| | ||||||||| ||||||||||||||||||    
T  13384716 ttgtagcttttgattctagaattgattttcacacacaaatttatagttcaactcacttttacat 13384653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 308 - 471
Target Start/End: Original strand, 32927834 - 32927998
Alignment:
Q  308 tagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctat 406  Q
    ||||||||| ||||| ||||||||||| | |  | |  |||||||| || ||| ||| |||||| ||||||| | || |||||||| ||||||| | ||     
T  32927834 tagaattgactctgacatgtttggttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatag 32927933  T
Q  407 aatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||  ||||| ||| | ||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  32927934 aattcatttttacacacaaatttatagttcaactcacttttacatgaatgtatccaaacacaaat 32927998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 308 - 460
Target Start/End: Original strand, 38868439 - 38868593
Alignment:
Q  308 tagaattgattctgatat-gtttggttgttattgattgtaattgattatgtctctataattgattatacttg-agatatgatttgtaacttttgaatcta 405  Q
    ||||||||||||||||||  |||||||||| | || |  ||||||| ||| ||||| |||||||| |||||| || || |||||||| ||||||  ||||    
T  38868439 tagaattgattctgatatattttggttgttgtcgagtaaaattgatgatgcctctaaaattgattctacttgaagctaagatttgtagcttttggttcta 38868538  T
Q  406 taatcgattttaacatataaatttataattcaactcacttttacatgaatgtatc 460  Q
    |||| |||||| ||| | ||||||||| ||||||||| |||||||  ||||||||    
T  38868539 taattgattttcacacacaaatttatagttcaactcaattttacaataatgtatc 38868593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 385 - 471
Target Start/End: Complemental strand, 26100211 - 26100125
Alignment:
Q  385 gatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||||| ||||||| |||||||| |||||| ||| | ||||||||  |||||||||||||||||| |||| ||||||||| ||||    
T  26100211 gatttgtagcttttgattctataattgatttttacacacaaatttatggttcaactcacttttacataaatgcatccaaacacaaat 26100125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 428 - 471
Target Start/End: Complemental strand, 9461560 - 9461517
Alignment:
Q  428 ttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||    
T  9461560 ttataattcaactcacttttatatgaatgtatccaaacacaaat 9461517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 423 - 474
Target Start/End: Complemental strand, 27218872 - 27218821
Alignment:
Q  423 taaatttataattcaactcacttttacatgaatgtatccaaacataaattac 474  Q
    |||||||||||||||||||| |||||||| ||| |||| |||||||||||||    
T  27218872 taaatttataattcaactcatttttacataaatttatctaaacataaattac 27218821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 35495010 - 35495096
Alignment:
Q  385 gatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||||| ||||||| |||| ||| | |||| ||| | |||| |||| ||||||| |||||||||||||| |||||||||| ||||    
T  35495010 gatttgtagcttttgattctagaattgttttttacacacaaatctatagttcaacttacttttacatgaatatatccaaacacaaat 35495096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 491 - 541
Target Start/End: Original strand, 41408266 - 41408316
Alignment:
Q  491 acttttaactaaaatcaattctacaaaattgattatatcaaaatcaatttt 541  Q
    |||| ||||||||||||||||||||||||| |||  |||||||||||||||    
T  41408266 acttctaactaaaatcaattctacaaaattaattcaatcaaaatcaatttt 41408316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 434 - 471
Target Start/End: Complemental strand, 43492253 - 43492216
Alignment:
Q  434 ttcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  43492253 ttcaacttacttttacatgaatgtatccaaacataaat 43492216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 364 - 471
Target Start/End: Complemental strand, 32994329 - 32994221
Alignment:
Q  364 aattgattatacttga-gatatgatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatcca 462  Q
    |||||||| ||||||| | |||||||| || ||||||| |||| ||| |||||| | | | ||||||||| | ||| | |||||||||||||||  ||||    
T  32994329 aattgattctacttgaagctatgatttctagcttttgagtctagaattgatttttatacacaaatttatagtgcaaatgacttttacatgaatgagtcca 32994230  T
Q  463 aacataaat 471  Q
    |||||||||    
T  32994229 aacataaat 32994221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 491 - 539
Target Start/End: Original strand, 36779467 - 36779515
Alignment:
Q  491 acttttaactaaaatcaattctacaaaattgattatatcaaaatcaatt 539  Q
    ||||||||  |||||||||||||||||||  ||||||||||||||||||    
T  36779467 acttttaatcaaaatcaattctacaaaatcaattatatcaaaatcaatt 36779515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 542
Target Start/End: Original strand, 29970878 - 29970929
Alignment:
Q  491 acttttaactaaaatcaattctacaaaattgattatatcaaaatcaattttt 542  Q
    |||||||||||||||||||| |||||| |  ||| |||||||||||||||||    
T  29970878 acttttaactaaaatcaattatacaaattcaattctatcaaaatcaattttt 29970929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 424 - 471
Target Start/End: Original strand, 32101132 - 32101179
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||||| |||||||||||||||||| |||||||||| ||| ||||    
T  32101132 aaatttatagttcaactcacttttacataaatgtatccacacacaaat 32101179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 471
Target Start/End: Original strand, 32767445 - 32767495
Alignment:
Q  423 taaatttataattcaactcacttttaca--tgaatgtatccaaacataaat 471  Q
    |||||||||  |||||||||||||||||  |||||||||||||||||||||    
T  32767445 taaatttattgttcaactcacttttacacatgaatgtatccaaacataaat 32767495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 346 - 459
Target Start/End: Complemental strand, 36200237 - 36200120
Alignment:
Q  346 aattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataatcgattttaacatata---aatttataattcaactc 441  Q
    ||||| ||||||||| | ||||||||  |||||| | ||||||||||   |||||| |||| ||| |||||| ||| ||    |||||||||||||| ||    
T  36200237 aattgtttatgtctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattc 36200138  T
Q  442 acttttacatgaatgtat 459  Q
    ||||||||||||||||||    
T  36200137 acttttacatgaatgtat 36200120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 425 - 471
Target Start/End: Complemental strand, 2764494 - 2764448
Alignment:
Q  425 aatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||||  |||||||||||||||| |||||||||||||| ||||||    
T  2764494 aatttatggttcaactcacttttacgtgaatgtatccaaatataaat 2764448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 385 - 471
Target Start/End: Complemental strand, 4662968 - 4662882
Alignment:
Q  385 gatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||||| ||||||  |||| ||| |||||| ||| | |||| |||| |||||||| ||||| | |||||||||||||||| ||||    
T  4662968 gatttgtagcttttgtttctagaattgatttttacacacaaatgtatagttcaactcgcttttccgtgaatgtatccaaacacaaat 4662882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 424 - 470
Target Start/End: Complemental strand, 18356115 - 18356069
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataaa 470  Q
    |||||||||||||||||||| |||| || ||||||||| ||||||||    
T  18356115 aaatttataattcaactcacgtttagataaatgtatccgaacataaa 18356069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 469
Target Start/End: Complemental strand, 13929723 - 13929678
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataa 469  Q
    ||||||||  |||||| |||||||||||||||||||| ||||||||    
T  13929723 aaatttatttttcaacccacttttacatgaatgtatcaaaacataa 13929678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 473
Target Start/End: Original strand, 32736521 - 32736570
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataaatta 473  Q
    ||||||||| ||||| |||||||||||||||||||| |||| | ||||||    
T  32736521 aaatttatagttcaattcacttttacatgaatgtattcaaatacaaatta 32736570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 32994390 - 32994341
Alignment:
Q  285 ggttataattgattttggaggtatagaattgattctgatatgtttggttg 334  Q
    |||| ||||||||| |||| || ||||||||||| |||||||||||||||    
T  32994390 ggttgtaattgattctggatgtgtagaattgattatgatatgtttggttg 32994341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 471
Target Start/End: Original strand, 38868780 - 38868849
Alignment:
Q  402 tctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||||| |||||| ||  | ||||||||| ||| ||||||||||||||||| |||| |||| ||||||    
T  38868780 tctataattgattttcacgcacaaatttatagttctactcacttttacatgaacgtattcaaatataaat 38868849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 6e-24; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 356 - 464
Target Start/End: Complemental strand, 6951400 - 6951291
Alignment:
Q  356 gtctctataattgattatacttga-gatatgatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaa 454  Q
    |||||||||||||||| ||||||| | || |||||||| ||||||| |||||||| |||||  ||| ||||||||||||||||| |||||||||||||||    
T  6951400 gtctctataattgattctacttgaagttaggatttgtagcttttgattctataattgatttgtacacataaatttataattcaattcacttttacatgaa 6951301  T
Q  455 tgtatccaaa 464  Q
    | ||||||||    
T  6951300 tttatccaaa 6951291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 308 - 455
Target Start/End: Original strand, 31906201 - 31906349
Alignment:
Q  308 tagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctat 406  Q
    ||||||||||| ||| ||||||| || || |||  | |||||| || |  |||||||||||||| ||||||| | ||||||||||||||||||| | |||    
T  31906201 tagaattgattatgacatgtttgattatttttgggtttaattgtttttacctctataattgattttacttgaagctatgatttgtaacttttgattatat 31906300  T
Q  407 aatcgattttaacatataaatttataattcaactcacttttacatgaat 455  Q
    ||| ||| ||  |||||||||||||| ||||||||||||||||||||||    
T  31906301 aattgatattttcatataaatttatagttcaactcacttttacatgaat 31906349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 291 - 466
Target Start/End: Complemental strand, 18851242 - 18851066
Alignment:
Q  291 aattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatgattt 389  Q
    |||||||| ||||| | ||||||||| |||||  |||||||||| |||  |||  |||||||  | || |||||||||||| ||||||| | ||||||||    
T  18851242 aattgattatggagttgtagaattgactctgacgtgtttggttgctatcaattagaattgatcctatccctataattgattctacttgaagctatgattt 18851143  T
Q  390 gtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaaca 466  Q
    ||| ||||||| | || ||| |||||| ||| | | ||||||| || ||||||||||||||||||  ||||||||||    
T  18851142 gtagcttttgattatagaattgattttcacacacatatttatagttaaactcacttttacatgaagttatccaaaca 18851066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 311 - 466
Target Start/End: Original strand, 42858052 - 42858209
Alignment:
Q  311 aattgattctgatatgtttggttgttattga-ttgtaattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataa 408  Q
    ||||||||||   ||||||||||||| |||| ||  |||| ||| || ||||| |||||||| ||||||| | || |||||| | ||||| | |||||||    
T  42858052 aattgattctagcatgtttggttgttgttgacttagaattcattttgactctagaattgattttacttgaagttaggatttggagcttttaattctataa 42858151  T
Q  409 tcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaaca 466  Q
    | |||||| ||| | ||||||||| |||||||||||||||||||||| ||| ||||||    
T  42858152 ttgattttcacacacaaatttatagttcaactcacttttacatgaatttattcaaaca 42858209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 288 - 336
Target Start/End: Complemental strand, 22226399 - 22226351
Alignment:
Q  288 tataattgattttggaggtatagaattgattctgatatgtttggttgtt 336  Q
    |||||||||||||||| || ||||||||||||||| |||||||||||||    
T  22226399 tataattgattttggacgtgtagaattgattctgacatgtttggttgtt 22226351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 491 - 542
Target Start/End: Complemental strand, 2868383 - 2868332
Alignment:
Q  491 acttttaactaaaatcaattctacaaaattgattatatcaaaatcaattttt 542  Q
    |||||||||||||||||||||||||||||| ||| ||  |||||||||||||    
T  2868383 acttttaactaaaatcaattctacaaaattaattctactaaaatcaattttt 2868332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 471
Target Start/End: Original strand, 14671085 - 14671131
Alignment:
Q  425 aatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||| || ||||||||||||||||||||| ||||||||||||||    
T  14671085 aatttatcatacaactcacttttacatgaatgcatccaaacataaat 14671131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 471
Target Start/End: Complemental strand, 9185063 - 9184994
Alignment:
Q  402 tctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||| ||| ||||||||||| |||||||||  |||||||||||| ||||| | ||||| |||||||||||    
T  9185063 tctagaattgattttaacatttaaatttatcgttcaactcacttctacataagtgtattcaaacataaat 9184994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 456
Target Start/End: Original strand, 9818717 - 9818826
Alignment:
Q  349 tgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataatcgatttta-acatataaatttataattcaactcacttt 446  Q
    ||||| || ||| |||||||||| ||||||| | ||||||||||| ||||||| |||| ||| ||||||  | | | ||||||||| |||||||||||||    
T  9818717 tgattttgcctccataattgattctacttgaagctatgatttgtagcttttgattctagaattgattttttaaacacaaatttatagttcaactcacttt 9818816  T
Q  447 tacatgaatg 456  Q
    || |||||||    
T  9818817 tatatgaatg 9818826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 309 - 471
Target Start/End: Complemental strand, 10860497 - 10860333
Alignment:
Q  309 agaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattat-acttga-gatatgatttgtaacttttgaatctat 406  Q
    |||||||||| ||| |||||||||| ||||||| | ||||||||| ||| |||| || ||||| | |||||| | ||  ||||||| ||||||  ||||     
T  10860497 agaattgattttgacatgtttggtttttattgaatataattgattttgtgtctagaagtgattctgacttgaagctagaatttgtagcttttgcctctag 10860398  T
Q  407 aatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    | | |||||| |  | |  |||||| ||| |||||||||| |||||||||||||| |||||||||    
T  10860397 agttgatttttagctttggatttatcatttaactcactttcacatgaatgtatccgaacataaat 10860333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 434 - 472
Target Start/End: Complemental strand, 11577637 - 11577599
Alignment:
Q  434 ttcaactcacttttacatgaatgtatccaaacataaatt 472  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  11577637 ttcaactcacttttacatgaatgcatccaaacacaaatt 11577599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 411 - 473
Target Start/End: Original strand, 34443021 - 34443083
Alignment:
Q  411 gattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaatta 473  Q
    |||||||||| | ||||||||  ||||| ||||||||| || ||||||| |||||||||||||    
T  34443021 gattttaacaaacaaatttatttttcaattcacttttatataaatgtattcaaacataaatta 34443083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 305 - 462
Target Start/End: Original strand, 36289974 - 36290132
Alignment:
Q  305 gtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatc 403  Q
    ||||| ||||||||||||||| |||||||||| | || |  |||| ||  ||  |  |||||||||||||||||| | || ||||||| | |||||| ||    
T  36289974 gtataaaattgattctgatatatttggttgttgtcgagtagaattaatgttgcattcataattgattatacttgaagttaagatttgttagttttgattc 36290073  T
Q  404 tataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatcca 462  Q
     ||| | |||||| | | | | ||||||| ||||||||| ||||||| |||||||||||    
T  36290074 catatttgattttcagacacatatttatagttcaactcagttttacacgaatgtatcca 36290132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 469
Target Start/End: Complemental strand, 12208859 - 12208814
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataa 469  Q
    ||||||||  |||||| |||||||||||||||||||| ||||||||    
T  12208859 aaatttatttttcaacccacttttacatgaatgtatcaaaacataa 12208814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 449
Target Start/End: Original strand, 15368396 - 15368457
Alignment:
Q  388 ttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttac 449  Q
    ||||||||||||| | || ||| |||| ||||| | ||||||||||||||||||| ||||||    
T  15368396 ttgtaacttttgattatagaattgattctaacacacaaatttataattcaactcagttttac 15368457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 471
Target Start/End: Complemental strand, 36927699 - 36927666
Alignment:
Q  438 actcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||||||||| ||||||||||||||||||||    
T  36927699 actcacttttacaggaatgtatccaaacataaat 36927666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 494 - 539
Target Start/End: Original strand, 38265061 - 38265106
Alignment:
Q  494 tttaactaaaatcaattctacaaaattgattatatcaaaatcaatt 539  Q
    |||||| |||||||||||||||||||  ||| ||||||||||||||    
T  38265061 tttaaccaaaatcaattctacaaaatcaattttatcaaaatcaatt 38265106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 471
Target Start/End: Original strand, 38845441 - 38845550
Alignment:
Q  364 aattgattatacttga-gatatgatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcactttt-acatgaatgtatcc 461  Q
    |||||||| ||||||| | || ||||||||  |||||| |||| ||| |||||| ||| | |||| |||| || ||||||||||| |||||||| |||||    
T  38845441 aattgattctacttgaagctaagatttgtagtttttgattctagaattgattttcacacacaaatatatagttaaactcactttttacatgaatatatcc 38845540  T
Q  462 aaacataaat 471  Q
    ||||| ||||    
T  38845541 aaacacaaat 38845550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 6e-24; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 291 - 471
Target Start/End: Original strand, 35064988 - 35065169
Alignment:
Q  291 aattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatgattt 389  Q
    |||||||| ||||||| ||||||||||| ||| || |||||||| | | || |  |||||||| || ||| |||||||||| ||||||| | ||  ||||    
T  35064988 aattgattatggaggtgtagaattgattatgacatttttggttgctttcgagtagaattgattttgcctcaataattgattttacttgaagctagtattt 35065087  T
Q  390 gtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    || |||||||| |||| ||| |||||| ||| | |||||||||  || ||||||||||||||||||||||||||||| ||||    
T  35065088 gtgacttttgattctagaattgatttttacacacaaatttatatctccactcacttttacatgaatgtatccaaacacaaat 35065169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 363 - 471
Target Start/End: Complemental strand, 8604710 - 8604601
Alignment:
Q  363 taattgattatacttga-gatatgatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatcc 461  Q
    ||||||||| ||||||| | || |||||||| |||| || |||| ||| |||||| ||| | ||||||||| || ||  |||||||||||||||||||||    
T  8604710 taattgattctacttgaagctaagatttgtagctttcgattctagaattgattttcacacacaaatttatagttgaatgcacttttacatgaatgtatcc 8604611  T
Q  462 aaacataaat 471  Q
    ||||||||||    
T  8604610 aaacataaat 8604601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 386 - 466
Target Start/End: Complemental strand, 32818434 - 32818354
Alignment:
Q  386 atttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaaca 466  Q
    ||||||| ||||||| |||| ||| ||||||  || | ||||||||| ||||||| |||||||||||||||||||||||||    
T  32818434 atttgtagcttttgattctagaattgatttttgcacacaaatttatagttcaactaacttttacatgaatgtatccaaaca 32818354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 385 - 473
Target Start/End: Complemental strand, 53713626 - 53713538
Alignment:
Q  385 gatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaatta 473  Q
    |||||||| ||||||| |||||||| || ||  ||||| | || |||| |||||||||||||||||||||||| |||||||| ||||||    
T  53713626 gatttgtagcttttgattctataattgacttccacataaatatatatagttcaactcacttttacatgaatgtgtccaaacacaaatta 53713538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 310 - 464
Target Start/End: Complemental strand, 53913718 - 53913563
Alignment:
Q  310 gaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataa 408  Q
    |||||||||| || ||||||| ||||| | || |  |||||||| || || ||||||||||| ||||| | |||||||||| | | || ||| |||||||    
T  53913718 gaattgattccgacatgtttgtttgttgtcgagtagaattgattttgcctttataattgattttacttaaagatatgatttatcatttgtgattctataa 53913619  T
Q  409 tcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaa 464  Q
    | |||||| ||| ||||||||||| || |||||||| | |||| ||||||| ||||    
T  53913618 ttgattttcacacataaatttatagttaaactcactataacataaatgtatgcaaa 53913563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 288 - 471
Target Start/End: Original strand, 33456296 - 33456478
Alignment:
Q  288 tataattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttgaga-tatga 386  Q
    |||||||||||||| | || ||||||||||| ||| || ||| |||| | | || |  ||||||||  ||||||| |||| ||| || || | | |||||    
T  33456296 tataattgattttgaatgtgtagaattgattatgacatattttgttggtgtcgactagaattgattccgtctctagaatttattctatttaaaactatga 33456395  T
Q  387 tttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||| ||||||| |||||||| ||||||  || |||||| |||| ||||| |||||||||||  || |||| |||||||||||    
T  33456396 tttgtagcttttgattctataattgatttt--cacataaatctatagttcaattcacttttacacaaaagtattcaaacataaat 33456478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 55927796 - 55927743
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataaattacatt 477  Q
    ||||||||  ||||| |||||||||||||||||||||||||||||||| |||||    
T  55927796 aaatttattgttcaagtcacttttacatgaatgtatccaaacataaatcacatt 55927743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 412 - 464
Target Start/End: Original strand, 43868183 - 43868235
Alignment:
Q  412 attttaacatataaatttataattcaactcacttttacatgaatgtatccaaa 464  Q
    ||||| |||||||||||||||||| || |||||||||||| ||||||||||||    
T  43868183 atttttacatataaatttataatttaagtcacttttacataaatgtatccaaa 43868235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 385 - 465
Target Start/End: Original strand, 45011894 - 45011974
Alignment:
Q  385 gatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaac 465  Q
    |||||||| ||||||| |||| ||| |||||| ||| | ||||||||||||  ||||||||||| |||||||||| |||||    
T  45011894 gatttgtagcttttgattctagaattgattttcacacacaaatttataattttactcacttttatatgaatgtattcaaac 45011974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 394 - 450
Target Start/End: Complemental strand, 52965910 - 52965854
Alignment:
Q  394 cttttgaatctataatcgattttaacatataaatttataattcaactcacttttaca 450  Q
    ||||||| |||| ||| |||| ||||| |||||||||||||||||||||||||||||    
T  52965910 cttttgattctaaaattgattctaacacataaatttataattcaactcacttttaca 52965854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 424 - 463
Target Start/End: Original strand, 16552014 - 16552053
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaa 463  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  16552014 aaatttatagttcaactcacttttacatgaatgtatccaa 16552053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 385 - 471
Target Start/End: Complemental strand, 21691277 - 21691191
Alignment:
Q  385 gatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||||| ||||||  | || ||| |||||| ||| | ||||||||| |||||| ||||||||||||||| |||||||||| ||||    
T  21691277 gatttgtagcttttggttgtagaattgattttcacacacaaatttatagttcaacacacttttacatgaatatatccaaacacaaat 21691191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 311 - 455
Target Start/End: Original strand, 39386578 - 39386723
Alignment:
Q  311 aattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataat 409  Q
    |||||||| |||||||||||||||||    | |  |||||||| |||||||| |||||||| ||||| | | ||  |||| |||| ||| | ||||||||    
T  39386578 aattgattatgatatgtttggttgttgacaagtagaattgattctgtctctaaaattgattctacttaaagctaaaatttataacatttaattctataat 39386677  T
Q  410 cgattttaacatataaatttataattcaactcacttttacatgaat 455  Q
     |||||| ||| | | ||||| | ||||||||||||||||||||||    
T  39386678 tgattttcacacacatatttaaagttcaactcacttttacatgaat 39386723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 411 - 463
Target Start/End: Complemental strand, 44279006 - 44278954
Alignment:
Q  411 gattttaacatataaatttataattcaactcacttttacatgaatgtatccaa 463  Q
    |||| ||||| |||||||| |||||||| ||| ||||||||||||||||||||    
T  44279006 gattctaacacataaatttttaattcaaatcatttttacatgaatgtatccaa 44278954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 470
Target Start/End: Original strand, 22683806 - 22683969
Alignment:
Q  309 agaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattata-cttga-gatatgatttgtaacttttgaatctat 406  Q
    |||||||||| ||| ||||| | ||||| |||| |  |||||||| || ||| | |||| |||||| ||||| | |||||| |||| ||||||| ||||     
T  22683806 agaattgattttgacatgttggtttgtttttgagtaaaattgattttgcctccagaattaattataacttgaagctatgatctgtagcttttgagtctaa 22683905  T
Q  407 aatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaa 470  Q
    |   |||||| ||||  ||||||||  |||||||| ||||||||| ||||| ||||||||||||    
T  22683906 acgtgatttttacattgaaatttattgttcaactcgcttttacataaatgtgtccaaacataaa 22683969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 493 - 539
Target Start/End: Original strand, 1616515 - 1616561
Alignment:
Q  493 ttttaactaaaatcaattctacaaaattgattatatcaaaatcaatt 539  Q
    ||||||| |||||||||||||||||||  ||| ||||||||||||||    
T  1616515 ttttaaccaaaatcaattctacaaaatcaattctatcaaaatcaatt 1616561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 491 - 541
Target Start/End: Original strand, 5025582 - 5025632
Alignment:
Q  491 acttttaactaaaatcaattctacaaaattgattatatcaaaatcaatttt 541  Q
    |||| ||||||||||||||||||||||||  |||  |||||||||||||||    
T  5025582 acttctaactaaaatcaattctacaaaatcaattcaatcaaaatcaatttt 5025632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 425 - 471
Target Start/End: Original strand, 33843771 - 33843817
Alignment:
Q  425 aatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||||  ||||||||||| |||||||||| |||||||||||||||    
T  33843771 aatttattgttcaactcactattacatgaatatatccaaacataaat 33843817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 491 - 541
Target Start/End: Complemental strand, 39000580 - 39000530
Alignment:
Q  491 acttttaactaaaatcaattctacaaaattgattatatcaaaatcaatttt 541  Q
    ||||||||||||| |||||||||||||||  |||  |||||||||||||||    
T  39000580 acttttaactaaactcaattctacaaaatcaattcaatcaaaatcaatttt 39000530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 426 - 460
Target Start/End: Complemental strand, 42694536 - 42694502
Alignment:
Q  426 atttataattcaactcacttttacatgaatgtatc 460  Q
    |||||||||||||||||||||||||||||| ||||    
T  42694536 atttataattcaactcacttttacatgaatatatc 42694502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 334
Target Start/End: Complemental strand, 2326973 - 2326928
Alignment:
Q  289 ataattgattttggaggtatagaattgattctgatatgtttggttg 334  Q
    |||||| ||| ||||||||||||||||||| ||| |||||||||||    
T  2326973 ataattaattatggaggtatagaattgattatgacatgtttggttg 2326928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 21691380 - 21691335
Alignment:
Q  291 aattgattttggaggtatagaattgattctgatatgtttggttgtt 336  Q
    |||||||| ||||||| ||||||||||||||| || ||||||||||    
T  21691380 aattgattctggaggtgtagaattgattctgacatatttggttgtt 21691335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 49138995 - 49138950
Alignment:
Q  291 aattgattttggaggtatagaattgattctgatatgtttggttgtt 336  Q
    |||||||| | ||||| ||||||||||||||| |||||||||||||    
T  49138995 aattgattctagaggtgtagaattgattctgacatgtttggttgtt 49138950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 291 - 466
Target Start/End: Original strand, 31751 - 31930
Alignment:
Q  291 aattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttg-agatatgattt 389  Q
    |||||||| | ||||| ||||||||||||||| ||||||||||||| | || |  |||||||| || ||| | ||||||||||||||| || || |||||    
T  31751 aattgattctagaggtgtagaattgattctgacatgtttggttgttgtcgagtaaaattgattctgcctccaaaattgattatacttgaagctaggattt 31850  T
Q  390 gtaacttttgaatctataatcgattttaacatataaatttataatt---caactcacttttacatgaatgtatccaaaca 466  Q
    ||| ||||||| | |  ||| |||||| ||||| | ||||||| ||   |||||||||||||||| ||||||||||||||    
T  31851 gtagcttttgattattgaattgattttcacatacatatttatagttaaacaactcacttttacataaatgtatccaaaca 31930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 6e-21; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 386 - 466
Target Start/End: Complemental strand, 31708303 - 31708223
Alignment:
Q  386 atttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaaca 466  Q
    ||||||| ||||||| |||| ||| |||| ||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  31708303 atttgtagcttttgattctagaattgattctaacacacaaatttataattcaactcacttttacatgaatgtatccaaaca 31708223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 386 - 471
Target Start/End: Original strand, 31013039 - 31013124
Alignment:
Q  386 atttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||| | |||||||||| ||| |||| ||||| | ||||||| |||||||||||||| |||||||||| ||||||||| ||||    
T  31013039 atttgtagcctttgaatctagaattgattctaacacacaaatttagaattcaactcacttgtacatgaatgcatccaaacacaaat 31013124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 394 - 468
Target Start/End: Complemental strand, 40147906 - 40147832
Alignment:
Q  394 cttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacata 468  Q
    ||||||| |||| ||| ||||| ||||  | ||||||| ||||||||||||||||||| ||||||||||||||||    
T  40147906 cttttgattctagaattgatttcaacacttgaatttatcattcaactcacttttacattaatgtatccaaacata 40147832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 547
Target Start/End: Original strand, 44225633 - 44225689
Alignment:
Q  491 acttttaactaaaatcaattctacaaaattgattatatcaaaatcaattttttccac 547  Q
    ||||||||| |||||||||||||||||||  ||||||| |||||||||||| |||||    
T  44225633 acttttaacgaaaatcaattctacaaaatcaattatattaaaatcaattttctccac 44225689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 394 - 469
Target Start/End: Complemental strand, 35264467 - 35264392
Alignment:
Q  394 cttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataa 469  Q
    ||||||| |||| ||| ||||||||||  |||||||||  ||||| ||| ||||||||||||||| ||||||||||    
T  35264467 cttttgattctagaattgattttaacacttaaatttattgttcaagtcatttttacatgaatgtacccaaacataa 35264392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 411 - 473
Target Start/End: Original strand, 43661885 - 43661947
Alignment:
Q  411 gattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaatta 473  Q
    |||||| ||| |||||| |||  ||||||||||||||||||||||||||  ||||||||||||    
T  43661885 gattttcacacataaatgtattgttcaactcacttttacatgaatgtataaaaacataaatta 43661947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 451
Target Start/End: Original strand, 52364068 - 52364137
Alignment:
Q  382 tatgatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacat 451  Q
    |||||||| || ||||||| |||||||| |||||| | | ||||||||| | ||||||||||||||||||    
T  52364068 tatgatttatagcttttgattctataattgattttcaaacataaatttacagttcaactcacttttacat 52364137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 496 - 541
Target Start/End: Original strand, 53078431 - 53078476
Alignment:
Q  496 taactaaaatcaattctacaaaattgattatatcaaaatcaatttt 541  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||    
T  53078431 taactaaaatcaattctacaaaattaattcaatcaaaatcaatttt 53078476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 474
Target Start/End: Complemental strand, 4401397 - 4401350
Alignment:
Q  427 tttataattcaactcacttttacatgaatgtatccaaacataaattac 474  Q
    |||||||||||||| | ||||||||||||||||| | |||||||||||    
T  4401397 tttataattcaacttatttttacatgaatgtatctatacataaattac 4401350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 457
Target Start/End: Original strand, 4526153 - 4526224
Alignment:
Q  386 atttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgt 457  Q
    ||||||||||||||| | || ||| |||||| ||| | ||||||||| |||||| ||||||||||| |||||    
T  4526153 atttgtaacttttgattttaaaattgatttttacacacaaatttatagttcaacacacttttacataaatgt 4526224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 434 - 469
Target Start/End: Original strand, 5406973 - 5407008
Alignment:
Q  434 ttcaactcacttttacatgaatgtatccaaacataa 469  Q
    ||||| ||||||||||||||||||||||||||||||    
T  5406973 ttcaaatcacttttacatgaatgtatccaaacataa 5407008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 424 - 471
Target Start/End: Complemental strand, 35253493 - 35253446
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||||| ||||||||||||||||||||| ||| |||||| ||||||    
T  35253493 aaatttatcattcaactcacttttacatgattgtttccaaatataaat 35253446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 7262885 - 7262919
Alignment:
Q  436 caactcacttttacatgaatgtatccaaacataaa 470  Q
    ||||||||||||||||||||||||| |||||||||    
T  7262885 caactcacttttacatgaatgtatcaaaacataaa 7262919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 489 - 539
Target Start/End: Complemental strand, 21261273 - 21261223
Alignment:
Q  489 ttacttttaactaaaatcaattctacaaaattgattatatcaaaatcaatt 539  Q
    ||||||||||| ||||||||||||||| |||  ||| ||||||||||||||    
T  21261273 ttacttttaaccaaaatcaattctacataatcaattttatcaaaatcaatt 21261223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 386 - 440
Target Start/End: Complemental strand, 39054159 - 39054105
Alignment:
Q  386 atttgtaacttttgaatctataatcgattttaacatataaatttataattcaact 440  Q
    |||| |||||||| | |||| ||| ||||||||||||||||||||||||| ||||    
T  39054159 atttataacttttaattctagaattgattttaacatataaatttataatttaact 39054105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 424 - 474
Target Start/End: Complemental strand, 46551294 - 46551244
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataaattac 474  Q
    |||||||||  |||||||||||||| |||||||||| |||||| |||||||    
T  46551294 aaatttatagctcaactcacttttatatgaatgtattcaaacaaaaattac 46551244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 381 - 471
Target Start/End: Complemental strand, 46853603 - 46853513
Alignment:
Q  381 atatgatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||||| | | ||||||| |||| ||| ||||||||||   ||||||||  |||||||||||||||||| ||| |||||  ||||||||    
T  46853603 atatgattcggagcttttgattctagaattgattttaacactcaaatttattgttcaactcacttttacataaatatatcctgacataaat 46853513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 289 - 335
Target Start/End: Complemental strand, 52141407 - 52141361
Alignment:
Q  289 ataattgattttggaggtatagaattgattctgatatgtttggttgt 335  Q
    |||||||||||| ||||| |||||| ||||||||||||||| |||||    
T  52141407 ataattgatttttgaggtgtagaatagattctgatatgtttagttgt 52141361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 434 - 471
Target Start/End: Original strand, 30958105 - 30958142
Alignment:
Q  434 ttcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  30958105 ttcaattcacttttacatgaatatatccaaacataaat 30958142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 434 - 471
Target Start/End: Original strand, 30973917 - 30973954
Alignment:
Q  434 ttcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  30973917 ttcaattcacttttacatgaatatatccaaacataaat 30973954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 395 - 471
Target Start/End: Complemental strand, 33792061 - 33791984
Alignment:
Q  395 ttttgaatctataatcgattttaacatataaatttataattcaa-ctcacttttacatgaatgtatccaaacataaat 471  Q
    |||||| | |||||| |||||| ||| ||||||||||  || || ||||||||||||||||| |||||||||| ||||    
T  33792061 ttttgattttataattgatttttacacataaatttattgtttaaactcacttttacatgaatctatccaaacacaaat 33791984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 442 - 471
Target Start/End: Complemental strand, 41591361 - 41591332
Alignment:
Q  442 acttttacatgaatgtatccaaacataaat 471  Q
    ||||||||||||||||||||||||||||||    
T  41591361 acttttacatgaatgtatccaaacataaat 41591332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 451
Target Start/End: Complemental strand, 54173363 - 54173314
Alignment:
Q  402 tctataatcgattttaacatataaatttataattcaactcacttttacat 451  Q
    ||||||||  ||||| ||| ||||||||||| ||||||||||||||||||    
T  54173363 tctataattaatttttacaaataaatttatagttcaactcacttttacat 54173314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 346 - 471
Target Start/End: Complemental strand, 38797734 - 38797609
Alignment:
Q  346 aattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcact 444  Q
    ||||| ||||| |||  ||||||||||||||||| | ||||||||||||||| | |||| | ||| |||||| ||| | ||||||||| |||||||||||    
T  38797734 aattggttatgcctccttaattgattatacttgaagttatgatttgtaacttctaaatcaagaattgattttcacacacaaatttatagttcaactcact 38797635  T
Q  445 tttacatgaatgtatccaaacataaat 471  Q
    |||| || ||||||| |||||||||||    
T  38797634 tttaaat-aatgtatgcaaacataaat 38797609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 308 - 471
Target Start/End: Complemental strand, 28084031 - 28083867
Alignment:
Q  308 tagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctat 406  Q
    ||||||||||||||| || |||||||||| | || |  |||||||| |||||   ||||||||| ||||||| | ||  ||||||| ||||||| |||||    
T  28084031 tagaattgattctgacatatttggttgttttcgagtagaattgattttgtcttcgtaattgattctacttgaagctagaatttgtagcttttgattctat 28083932  T
Q  407 aatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||  ||||| ||| | ||||||  | |||| ||||||||||||||||| |||||||||| ||||    
T  28083931 aattaatttttacacacaaatttcaagttcagctcacttttacatgaatatatccaaacacaaat 28083867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 387 - 471
Target Start/End: Original strand, 34915088 - 34915172
Alignment:
Q  387 tttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||| ||||||| |||| ||| |||| ||||| |  | ||||||||||||||||||||||||||||||||| |||||||||||    
T  34915088 tttgtagcttttgattctagaattgattctaacacaccattttataattcaactcacttttacatgaatgtattcaaacataaat 34915172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 386 - 468
Target Start/End: Original strand, 3016183 - 3016265
Alignment:
Q  386 atttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacata 468  Q
    ||||||| ||||||| |||| ||| ||| || ||| |||||||||   |||||||||||||||||||||||||||||||||||    
T  3016183 atttgtagcttttgattctagaattgatgtttacacataaatttacggttcaactcacttttacatgaatgtatccaaacata 3016265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 349 - 472
Target Start/End: Original strand, 1514326 - 1514450
Alignment:
Q  349 tgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcactttt 447  Q
    ||||| |||||| | |||| ||| ||||||| | || |||||||| ||||| | | |||||| |||||| ||| | ||||||||  ||||||||| ||||    
T  1514326 tgattctgtctccaaaatttattctacttgaagctaggatttgtagctttttattatataattgatttttacacacaaatttattgttcaactcattttt 1514425  T
Q  448 acatgaatgtatccaaacataaatt 472  Q
    ||||||||||||||||||| |||||    
T  1514426 acatgaatgtatccaaacacaaatt 1514450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 7524133 - 7524219
Alignment:
Q  385 gatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||||| ||||||| | || ||| |||||| ||| | ||||||||| |||||||||||||||||| ||||| |||||||| ||||    
T  7524133 gatttgtagcttttgattatagaattgatttttacacacaaatttatagttcaactcacttttacataaatgtgtccaaacacaaat 7524219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 411 - 464
Target Start/End: Original strand, 2555947 - 2556000
Alignment:
Q  411 gattttaacatataaatttataattcaactcacttttacatgaatgtatccaaa 464  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||  |||||||    
T  2555947 gattctaacatacaaatttataattcaactcacttttacatgaatacatccaaa 2556000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 385 - 462
Target Start/End: Original strand, 11049270 - 11049347
Alignment:
Q  385 gatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatcca 462  Q
    |||||||| ||||||| |||| ||| |||||| ||| | ||||||||| ||||| |||||||||| ||||||||||||    
T  11049270 gatttgtagcttttgattctaaaattgatttttacacacaaatttatagttcaagtcacttttacgtgaatgtatcca 11049347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 411 - 456
Target Start/End: Complemental strand, 30850438 - 30850393
Alignment:
Q  411 gattttaacatataaatttataattcaactcacttttacatgaatg 456  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||    
T  30850438 gattttaacatacaaatttatagttcaactcacttttacatgaatg 30850393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 287 - 455
Target Start/End: Complemental strand, 47322070 - 47321902
Alignment:
Q  287 ttataattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttg-agatatg 385  Q
    |||||||| ||| ||||||| ||||||||||| ||| |||||| |||||| | || |  |||||||| ||  |||||||||||||||||||| || ||      
T  47322070 ttataatttattgtggaggtgtagaattgattttgacatgttttgttgttgtcgagtagaattgattctgcttctataattgattatacttgaagctaga 47321971  T
Q  386 atttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaat 455  Q
    |||||  | |||| | |||| ||| |||||| | | | ||||||||| ||||| ||||||||||||||||    
T  47321970 atttg-cagttttaattctagaattgattttcatacacaaatttatagttcaattcacttttacatgaat 47321902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 547
Target Start/End: Original strand, 4347066 - 4347122
Alignment:
Q  491 acttttaactaaaatcaattctacaaaattgattatatcaaaatcaattttttccac 547  Q
    ||||||||| |||||||||||||||||||  ||| || |||||||||||||||||||    
T  4347066 acttttaaccaaaatcaattctacaaaatcaattctaccaaaatcaattttttccac 4347122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 424 - 471
Target Start/End: Original strand, 30557561 - 30557608
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||||| ||||||||||||||| ||||||||||||||||| ||||    
T  30557561 aaatttatagttcaactcacttttatatgaatgtatccaaacacaaat 30557608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 424 - 471
Target Start/End: Original strand, 35961427 - 35961474
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||| ||||||||||||||||||||||||||||  ||||||||||    
T  35961427 aaatttaaaattcaactcacttttacatgaatgtatagaaacataaat 35961474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 289 - 336
Target Start/End: Complemental strand, 36780279 - 36780232
Alignment:
Q  289 ataattgattttggaggtatagaattgattctgatatgtttggttgtt 336  Q
    |||||||||| ||||||| ||||||||||| |||||||||||||||||    
T  36780279 ataattgattatggaggtgtagaattgattttgatatgtttggttgtt 36780232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 386 - 460
Target Start/End: Original strand, 14644718 - 14644792
Alignment:
Q  386 atttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatc 460  Q
    |||||||  ||||||  |||||||||||||| |||  ||| |||| |||||||||||||||||||| ||||||||    
T  14644718 atttgtagtttttgatcctataatcgatttttacaagtaattttaaaattcaactcacttttacatcaatgtatc 14644792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 434 - 471
Target Start/End: Complemental strand, 213297 - 213260
Alignment:
Q  434 ttcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  213297 ttcaactcacttttacatgcatgtatccaaacataaat 213260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 18325132 - 18325087
Alignment:
Q  426 atttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||| ||||||| |||||||||||||||||||||| ||||||||    
T  18325132 atttattattcaacccacttttacatgaatgtatccatacataaat 18325087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 345 - 448
Target Start/End: Complemental strand, 7790748 - 7790644
Alignment:
Q  345 taattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcac 443  Q
    ||||||||  ||||| || |||||||| ||||||| | |||||||||||  ||| || |||||||| |||||| ||| | ||||||||  ||||||||||    
T  7790748 taattgatattgtctttagaattgattctacttgaagttatgatttgtagatttagattctataattgatttttacacacaaatttattgttcaactcac 7790649  T
Q  444 tttta 448  Q
    |||||    
T  7790648 tttta 7790644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 402 - 454
Target Start/End: Original strand, 24587949 - 24588001
Alignment:
Q  402 tctataatcgattttaacatataaatttataattcaactcacttttacatgaa 454  Q
    |||||||| ||||||||||   |||||||| ||||||||||||||||||||||    
T  24587949 tctataattgattttaacactcaaatttattattcaactcacttttacatgaa 24588001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 468
Target Start/End: Complemental strand, 1416238 - 1416203
Alignment:
Q  433 attcaactcacttttacatgaatgtatccaaacata 468  Q
    ||||||||||||||||||||||||||| ||||||||    
T  1416238 attcaactcacttttacatgaatgtattcaaacata 1416203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 412 - 459
Target Start/End: Complemental strand, 28267947 - 28267900
Alignment:
Q  412 attttaacatataaatttataattcaactcacttttacatgaatgtat 459  Q
    ||||||||  ||||||||||||||||| | ||||||||||||||||||    
T  28267947 attttaacgcataaatttataattcaagttacttttacatgaatgtat 28267900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 424 - 471
Target Start/End: Complemental strand, 32370057 - 32370010
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||||||||| ||||  |||||||||||||||||||||||| ||||    
T  32370057 aaatttataattgaacttgcttttacatgaatgtatccaaacacaaat 32370010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 303 - 464
Target Start/End: Original strand, 3416017 - 3416179
Alignment:
Q  303 aggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatactt-gagatatgatttgtaacttttgaa 401  Q
    |||| |||| |||||||||| ||||||| ||||  |||| |  ||||||||| |  |||| ||||||||||||||  || || ||||||||  |||| |     
T  3416017 aggtgtagagttgattctgagatgtttgattgtcgttgagtagaattgattacgcatctaaaattgattatacttaaagttaagatttgtagttttttat 3416116  T
Q  402 tctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaa 464  Q
    | || ||| |||||| ||| | ||||||||| || |||||| ||||| ||| |||||||||||    
T  3416117 tttagaattgatttttacacacaaatttatagtttaactcaattttatatggatgtatccaaa 3416179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 30557441 - 30557483
Alignment:
Q  291 aattgattttggaggtatagaattgattctgatatgtttggtt 333  Q
    |||||||| ||||||| ||||||||||||||| ||||||||||    
T  30557441 aattgattctggaggtgtagaattgattctgacatgtttggtt 30557483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 426 - 464
Target Start/End: Original strand, 47053465 - 47053503
Alignment:
Q  426 atttataattcaactcacttttacatgaatgtatccaaa 464  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  47053465 atttatagtttaactcacttttacatgaatgtatccaaa 47053503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 473
Target Start/End: Original strand, 1233364 - 1233413
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataaatta 473  Q
    ||||||||  || |||||||||| ||||||||||||| ||||||||||||    
T  1233364 aaatttattgttgaactcactttcacatgaatgtatctaaacataaatta 1233413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 434 - 471
Target Start/End: Complemental strand, 24697614 - 24697577
Alignment:
Q  434 ttcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||||||||||||||| || ||||||||||||||||    
T  24697614 ttcaactcacttttacataaacgtatccaaacataaat 24697577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 434 - 471
Target Start/End: Complemental strand, 48549030 - 48548993
Alignment:
Q  434 ttcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  48549030 ttcaactcacttttacataaatgtatcaaaacataaat 48548993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 294 - 541
Target Start/End: Complemental strand, 28725209 - 28724963
Alignment:
Q  294 tgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtctctataattgattatacttga-gatatgatttgta 392  Q
    ||||||| ||| | |||||||||||  || ||||||||||||| | | ||  ||||||||  | ||| |  ||||||||||||||| | ||  |||||||    
T  28725209 tgatttttgagatgtagaattgatttagacatgtttggttgttttcgtttagaattgattcagcctccaatattgattatacttgaagctagaatttgta 28725110  T
Q  393 acttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaattacatttnnnnnnnnnnttac 492  Q
     ||||||| |||||||| |||| | |||  || ||||| | |||| || ||||||||||  ||||||| ||||| ||||||  |||          ||||    
T  28725109 gcttttgattctataattgattctcacacgtatatttaaagttcagcttacttttacatagatgtatctaaacacaaatta--tttttagttagaattac 28725012  T
Q  493 ttttaactaaaatcaattctacaaaattgattatatcaaaatcaatttt 541  Q
    |||||||||||||||| |||||| ||| |||||||||||||| ||||||    
T  28725011 ttttaactaaaatcaactctacataatcgattatatcaaaataaatttt 28724963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 346 - 471
Target Start/End: Original strand, 22195844 - 22195970
Alignment:
Q  346 aattgattatgtctctataattgattatacttga-gatatgatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcact 444  Q
    |||||||||||||   | |||||||| ||||| | | ||||||||||||||||||| |||| ||| |||||| ||||  | ||||||| || || |||||    
T  22195844 aattgattatgtcctcaaaattgattttactttaagctatgatttgtaacttttgattctaaaattgattttcacatgcatatttatagtttaattcact 22195943  T
Q  445 tttacatgaatgtatccaaacataaat 471  Q
    |||||||  ||||||||||||| ||||    
T  22195944 tttacattcatgtatccaaacacaaat 22195970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 434 - 471
Target Start/End: Complemental strand, 40561774 - 40561737
Alignment:
Q  434 ttcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40561774 ttcaactcacttttacatgaatgtatccaaacataaat 40561737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 385 - 466
Target Start/End: Complemental strand, 42816533 - 42816452
Alignment:
Q  385 gatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaaca 466  Q
    ||||| |||||||| | |||| ||| |||||| ||| | ||||||||||||||| |||||| ||||||||||||| ||||||    
T  42816533 gatttataacttttaattctagaattgattttcacacacaaatttataattcaattcacttctacatgaatgtatgcaaaca 42816452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 387 - 471
Target Start/End: Original strand, 40491600 - 40491684
Alignment:
Q  387 tttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||| ||||||| |||| ||| || ||| ||| | ||||||| | || |||||||||||||||||||||||||||| ||||||    
T  40491600 tttgtagcttttgattctagaattgacttttacacacaaatttaaagtttaactcacttttacatgaatgtatccaaaaataaat 40491684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 404 - 463
Target Start/End: Original strand, 39956266 - 39956325
Alignment:
Q  404 tataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaa 463  Q
    |||||| ||| || ||| |||||||||||||||||||||||||||  |||||||||||||    
T  39956266 tataattgatcttcacacataaatttataattcaactcacttttatgtgaatgtatccaa 39956325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 471
Target Start/End: Original strand, 25156237 - 25156306
Alignment:
Q  402 tctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||| ||| |||||| ||| ||||||| |||| |||||||||||||| |||||||||| |||||| ||||    
T  25156237 tctagaattgatttttacacataaattaataaatcaactcacttttatatgaatgtattcaaacacaaat 25156306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 471
Target Start/End: Original strand, 27571891 - 27571968
Alignment:
Q  394 cttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||| |||| ||| ||||||||||   || ||||| ||||||||||| ||||||| ||||||||||| |||||||    
T  27571891 cttttgattctagaattgattttaacactcaagtttattattcaactcacatttacataaatgtatccaaccataaat 27571968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 491 - 547
Target Start/End: Original strand, 31625560 - 31625616
Alignment:
Q  491 acttttaactaaaatcaattctacaaaattgattatatcaaaatcaattttttccac 547  Q
    ||||||||| ||||||||||||||| |||| ||| |||||||||| ||| |||||||    
T  31625560 acttttaaccaaaatcaattctacagaattaattctatcaaaatcgattatttccac 31625616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 411 - 459
Target Start/End: Original strand, 32295230 - 32295278
Alignment:
Q  411 gattttaacatataaatttataattcaactcacttttacatgaatgtat 459  Q
    |||| ||||| | |||||||||||||||||||||||||||| |||||||    
T  32295230 gattctaacacacaaatttataattcaactcacttttacataaatgtat 32295278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 435 - 471
Target Start/End: Original strand, 45557435 - 45557471
Alignment:
Q  435 tcaactcacttttacatgaatgtatccaaacataaat 471  Q
    |||||||||||||||||||||||||||||||| ||||    
T  45557435 tcaactcacttttacatgaatgtatccaaacacaaat 45557471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 424 - 471
Target Start/End: Original strand, 17111904 - 17111951
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||||||||| ||||| ||||||||||||| ||||||||| ||||    
T  17111904 aaatttataattctactcatttttacatgaatgcatccaaacacaaat 17111951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 411 - 470
Target Start/End: Complemental strand, 40796028 - 40795969
Alignment:
Q  411 gattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaa 470  Q
    ||||||||||   |||||||  |||||| |||||||||||||||||||||||| ||||||    
T  40796028 gattttaacactcaaatttactattcaaatcacttttacatgaatgtatccaatcataaa 40795969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 454
Target Start/End: Complemental strand, 41386902 - 41386811
Alignment:
Q  364 aattgattatacttga-gatatgatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaa 454  Q
    |||||||| ||||||| | || |||||||| ||||| | |||| ||| ||| || ||| | |||||||||||||||||||||||| ||||||    
T  41386902 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatatttacacacaaatttataattcaactcacttttgcatgaa 41386811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 392 - 471
Target Start/End: Original strand, 41788343 - 41788422
Alignment:
Q  392 aacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||||| |||||||| ||||||||||   ||||||    ||||||||||||||| || ||||||| |||||||||||    
T  41788343 aacttttgagtctataattgattttaacactcaaatttgctgttcaactcacttttatattaatgtatacaaacataaat 41788422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 424 - 474
Target Start/End: Complemental strand, 9480635 - 9480585
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataaattac 474  Q
    |||||||||||| |||||||||||| |||||||||| ||| || |||||||    
T  9480635 aaatttataatttaactcacttttaaatgaatgtattcaatcacaaattac 9480585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 433 - 471
Target Start/End: Original strand, 12306791 - 12306829
Alignment:
Q  433 attcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  12306791 attcaactcacttttacatgaatctagccaaacataaat 12306829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 289 - 359
Target Start/End: Original strand, 29163417 - 29163487
Alignment:
Q  289 ataattgattttggaggtatagaattgattctgatatgtttggttgttattgattgtaattgattatgtct 359  Q
    |||||||||||||||||| |||||||||| |||| ||||||  ||||| |||| | | ||||||| |||||    
T  29163417 ataattgattttggaggtgtagaattgatcctgacatgtttaattgttgttgagtatgattgattctgtct 29163487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 493 - 547
Target Start/End: Original strand, 32683694 - 32683748
Alignment:
Q  493 ttttaactaaaatcaattctacaaaattgattatatcaaaatcaattttttccac 547  Q
    ||||||||||||||||||||||| |||  |||  |||||||||||||||| ||||    
T  32683694 ttttaactaaaatcaattctacataatcaattcaatcaaaatcaatttttcccac 32683748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 385 - 463
Target Start/End: Original strand, 35772278 - 35772356
Alignment:
Q  385 gatttgtaacttttgaatctataatcgattttaacatataaatttataattcaactcacttttacatgaatgtatccaa 463  Q
    ||||||||  |||||| | || ||| |||||| ||| ||||||||||||||||| | ||||||| || |||||||||||    
T  35772278 gatttgtagtttttgattttagaattgattttcacaaataaatttataattcaatttacttttatataaatgtatccaa 35772356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 444 - 474
Target Start/End: Original strand, 41010035 - 41010065
Alignment:
Q  444 ttttacatgaatgtatccaaacataaattac 474  Q
    |||||||||||||||||||||||||||||||    
T  41010035 ttttacatgaatgtatccaaacataaattac 41010065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 424 - 471
Target Start/End: Complemental strand, 14140 - 14093
Alignment:
Q  424 aaatttataattcaactcacttttacatgaatgtatccaaacataaat 471  Q
    ||||||||  ||||||||||||| ||||||||||||||||||||||||    
T  14140 aaatttatttttcaactcactttcacatgaatgtatccaaacataaat 14093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University