View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4804-Insertion-5 (Length: 736)
Name: NF4804-Insertion-5
Description: NF4804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4804-Insertion-5 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 7 - 732
Target Start/End: Complemental strand, 28594334 - 28593610
Alignment:
| Q |
7 |
aattttaacattgatataacacttagtgatgaaattagagataatttcgnnnnnnnn-catataaaatattttatttcgttaaatcgattttatattcct |
105 |
Q |
| |
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||||||||| |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28594334 |
aattttaacgttgatataacacttagcgatgaaattagatataatttcgtttttttttcatataaaatattttatttcgttaaatcgattttatattcct |
28594235 |
T |
|
| Q |
106 |
aatgatattgattttgtggaaatttattatgcaggtagatcacggaaacaacgtgataaggaagaaagcttgtgtaagaagccaaacgtaaatgaagaat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28594234 |
aatgatattgattttgtggaaatttattatgcaggtagatcacggaaacaacttgataaggaagaaagcttgtgtaagaagccaaacgtaaatgaagaat |
28594135 |
T |
|
| Q |
206 |
atctggaaacatttagaacaaagtcttatattgaaatatgcaacaaagcacaagggcaatttgggaagacaatcaacaccaaaagactctcttcatcttg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28594134 |
atctggaaacatttagaacaaagtcttatattgaaatatgcaacaaagcacaagggcaatttgggaagacaatcaacaccaaaagactctcttcatcttg |
28594035 |
T |
|
| Q |
306 |
ttcaacatcttctcctcttcctcctatatgcctgaatctcaccgagtctttgctcgaaccccgacatgaagtcataacaaacatgacacgaaactttaag |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
28594034 |
ttcaacatcttctcctcttcctcctatatgcctgaatctcaccgagtctttgctcgaaccccgacatgaaatcataacaaacatgagacgaaactttaag |
28593935 |
T |
|
| Q |
406 |
gtgcatcatcttctagttaactatttcgacgctagcttagaagcaagtcgttgttgtgacacaatccttgaaggaatccactcaacaagaatttcttata |
505 |
Q |
| |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28593934 |
gtgcatgatcttctagttaactatttcgatgctagcttagaagcaagtcgttgttgtgacacaatccttgaaggaatccactcaacaagaatttcttata |
28593835 |
T |
|
| Q |
506 |
caagaatcacacaagttgttaagttaagcaaaagggtgctaaatgaacaaacaaagaaagatatctatagagagcttgcttcattttcatcaaaagtaca |
605 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28593834 |
caagaatcacacgagttgttaagttaagcaaaagggtgctaaatgaacaaacaaagaaagatatctatagagagcttgcttcattttcatcaaaagtaca |
28593735 |
T |
|
| Q |
606 |
aaacaaccctttgtccgttattagtacaatgcaattcgataatattcacaatagggtacattgaacttcttcatagactaacatcaaagagaaagaaaat |
705 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28593734 |
aaacaaccctttgtccgttattagtacaatgcaattcgataatattcacaata-ggtacattgaacttcttcatagactaacatcaaagagaaagaaaat |
28593636 |
T |
|
| Q |
706 |
tcaaagaagaattagcattgattaggg |
732 |
Q |
| |
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||||||||| ||||||||||||||||| |
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|
| T |
28593635 |
tcaaagaag-attagcattgattaggg |
28593610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 113 - 730
Target Start/End: Original strand, 8357364 - 8357973
Alignment:
| Q |
113 |
ttgattttgtggaaatttattatgcaggtagatcacggaaacaacgtgataaggaagaaagcttgtgtaagaagccaaacgtaaatgaagaatatctgga |
212 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||| || ||||||| || |||||||||| |||| |||| ||||||||||||||| | || |
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| T |
8357364 |
ttgattttgtggaaataaattaagcaggtagatcacggaaacaatgtcataaggatgatagcttgtgtaggaagtcaaatgtaaatgaagaatattttga |
8357463 |
T |
|
| Q |
213 |
aacatttagaacaaagtcttatattgaaatatgcaacaaagcacaagggcaatttgggaagacaatcaacaccaaaagactctcttcatcttgttcaaca |
312 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||||| | |||||||||||| |
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| T |
8357464 |
agcatttagaacaaagtcttatattgaaatatgcaacaaagcaaaagtgcaatttgagaagacaatcagcaccaaaagactctctacctcttgttcaaca |
8357563 |
T |
|
| Q |
313 |
tcttctcctcttcctcctatatgcctgaatctcaccgagtctttgctcgaaccccgacatgaagtcataacaaacatgacacgaaactttaaggtgcatc |
412 |
Q |
| |
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||| ||||||||||||||| | ||||||||||||| |||||||||||||||||| ||| | |||||||||||||||| ||| ||||||||||||| |
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|
| T |
8357564 |
tct------cttcctcctatatgcattaatctcaccgagtatttgctcgaaccccgacaagaaataataacaaacatgacacaaaattttaaggtgcatc |
8357657 |
T |
|
| Q |
413 |
atcttctagttaactatttcgacgctagcttagaagcaagtcgttgttgtgacacaatccttgaaggaatccactcaacaagaatttcttatacaagaat |
512 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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|
| T |
8357658 |
atcttctagttgactatttcgaagctagcttagaagcatgtcgttgttgtgacacaatccttgaaggaatccacgcaacaagactttcttatacaagaac |
8357757 |
T |
|
| Q |
513 |
cacacaagttgttaagttaagcaaaagggtgctaaatgaacaaacaaagaaagatatctatagagagcttgcttcattttcatcaaaagtacaaaacaac |
612 |
Q |
| |
|
| || | ||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||| ||||||| |||| |||||||| |||||||||| |
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|
| T |
8357758 |
taaacgatttgttaagttaagcaaaagggtgattaatgaaccaacaaagaaagatatctatagagaacttgctttatttccatcaaaattacaaaacaat |
8357857 |
T |
|
| Q |
613 |
cctttgtccgttattagtacaatgcaattcgataatattcacaatagggtacattgaacttcttcatagactaacatcaaagagaaagaaaattcaaaga |
712 |
Q |
| |
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|||||||| ||||||||||||||||||||| || | |||| ||||| ||||||| ||||||||||| | ||||||||||||||||| ||||||||||||| |
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| T |
8357858 |
cctttgtctgttattagtacaatgcaattccatgacattcgcaata-ggtacatggaacttcttcaaaaactaacatcaaagagaaggaaaattcaaaga |
8357956 |
T |
|
| Q |
713 |
agaattagcattgattag |
730 |
Q |
| |
|
|| |||| |||||||||| |
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|
| T |
8357957 |
ag-attaacattgattag |
8357973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 399 - 479
Target Start/End: Original strand, 53447179 - 53447259
Alignment:
| Q |
399 |
ctttaaggtgcatcatcttctagttaactatttcgacgctagcttagaagcaagtcgttgttgtgacacaatccttgaagg |
479 |
Q |
| |
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|||||||||||||||||||||||| |||| || || || |||||||||||| || |||||| |||| ||||||| |||| |
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| T |
53447179 |
ctttaaggtgcatcatcttctagtggactactttgaagccagcttagaagcatatctttgttgcgacaaaatccttcaagg |
53447259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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