View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4804-Insertion-6 (Length: 730)
Name: NF4804-Insertion-6
Description: NF4804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4804-Insertion-6 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 181 - 730
Target Start/End: Original strand, 45392989 - 45393534
Alignment:
| Q |
181 |
gcattattagagatttctcctttctttatccatgaatgaagttaatctcgaaagataaatagacacacaataaatatgtaattctattattagagattaa |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45392989 |
gcattattagagatttctcctttctttatccatgaatgaagttaatctcgaaagataaatagacacacaataaatatgtaattctattattagagattaa |
45393088 |
T |
|
| Q |
281 |
gtttgcatcaccaacaaatatgaattctatgttcaataaatatgattacggcataaggctctcaacaacatgatcaaacaatgtatgagtttcatgcctc |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45393089 |
gtttgcatcaccaacaaatatgaattctatgttcaataaatatgattacggcataaggctctcaacaacatgatcaaacaatgtatgagtttcatgcctc |
45393188 |
T |
|
| Q |
381 |
aagtaattattagtagcaagcactttaacgctacaataggaaagttcaatatgctagtccccatctgataagtgcagcaggatcaagcatctgcacatag |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45393189 |
aagtaattattagtagcaagcactttaacgctacaataggaaagttcaatatgctagtccccatctgataagtgcagcaggatcaagcatctgcacatag |
45393288 |
T |
|
| Q |
481 |
ttggtggcgaaaactatcaatctttcccatccaaatgcagactatgaaactcgattaccatctattaacaa--atataaaagattcctgtgcagtagtta |
578 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45393289 |
ttggtggtgaaaactatcaatctttcccatccaaatgcagactatgaaacctgattaccatctattaacaaatatataaaagattcctgtgcagtagtta |
45393388 |
T |
|
| Q |
579 |
ccacaagataacaagtttacaatcaacatcaatgaaaaaataagtgtcatgttatcatagaggttcttctattattccaatctaattgtgaaactgatct |
678 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45393389 |
ccacaagataacaagtttacaatcaacatcaatgaaaaaataag-----tgttatcatagaggttcttctattattccaatctaattgtgaaactgatct |
45393483 |
T |
|
| Q |
679 |
aagatattgggggattataaacggagttacaattgtaacaacctgttctact |
730 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45393484 |
aagatatt-ggggattataaacggagttacaattgtaacaacctgttctact |
45393534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 40 - 166
Target Start/End: Original strand, 45392876 - 45393002
Alignment:
| Q |
40 |
atattaaccatcaagcttcagctaaaacatgcaaaaaggctggctgaacatcaagcttccatttttagagtagagtcaaaacttaaaacaacatatctat |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45392876 |
atattaaccatcaagcttcagctaaaacatgcaaaaaggctggctgaacatcaagcttccatttttagagtagagtcaaaacttaaaacaacatatctat |
45392975 |
T |
|
| Q |
140 |
aaatgaagttcatgcattattagagat |
166 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
45392976 |
gaatgaagttcatgcattattagagat |
45393002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 52 - 217
Target Start/End: Original strand, 52739482 - 52739634
Alignment:
| Q |
52 |
aagcttcagctaaaacatgcaaaaaggctggctgaacatcaagcttccatttttagagtagagtcaaaacttaaaacaacatatctataaatgaagttca |
151 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||||||||||| |||||||||||| | || |||||| |||||||||||||||| ||| ||||||| |
|
|
| T |
52739482 |
aagcatcagcgaaaacatgcaaaa-ggctggctgaacaccaagcttccattataag--tagagt-------taaaacaacatatctaagaataaagttca |
52739571 |
T |
|
| Q |
152 |
tgcattattagagataataaggatcagaagcattattagagatttctcctttctttatccatgaat |
217 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||| |||| |||||||||||||||||||||||| |
|
|
| T |
52739572 |
tgcattattagagataa---ggatcagaagtattataagaggtttctcctttctttatccatgaat |
52739634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 497 - 571
Target Start/End: Original strand, 52739838 - 52739913
Alignment:
| Q |
497 |
tcaatctttcccatccaaatgcagactatgaaactcgattaccatctatt-aacaaatataaaagattcctgtgca |
571 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| || || ||||| | || |||||||||||| ||||||| |||| |
|
|
| T |
52739838 |
tcaacctttcccacccaaatgcagactatgaaattcaataaccatatgttaaacaaatataaatgattcctatgca |
52739913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 433
Target Start/End: Original strand, 52739739 - 52739789
Alignment:
| Q |
383 |
gtaattattagtagcaagcactttaacgctacaataggaaagttcaatatg |
433 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||| |||||||||||||||| |
|
|
| T |
52739739 |
gtaattattagcagcaaacactttaaaactacaacaggaaagttcaatatg |
52739789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 387 - 514
Target Start/End: Original strand, 31667166 - 31667289
Alignment:
| Q |
387 |
ttattagtagcaagcactttaacgctacaataggaaagttcaatatgctagtccccatctgataagtgcagcaggatcaagcatctgcacatagttggtg |
486 |
Q |
| |
|
||||||| ||||||||||||| ||||| ||||||||||||||||| || ||| |||||||||| |||||||||||| ||| ||||| || | |
|
|
| T |
31667166 |
ttattagcggcaagcactttaaaactacaccaggaaagttcaatatgcctgt-cccttctgataagt---gcaggatcaagcttctacacattattattt |
31667261 |
T |
|
| Q |
487 |
gcgaaaactatcaatctttcccatccaa |
514 |
Q |
| |
|
|||||||| ||||| |||| |||||||| |
|
|
| T |
31667262 |
gcgaaaacaatcaaccttttccatccaa |
31667289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University