View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4804-Insertion-7 (Length: 698)
Name: NF4804-Insertion-7
Description: NF4804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4804-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 7 - 377
Target Start/End: Complemental strand, 32610888 - 32610518
Alignment:
| Q |
7 |
attcttatggttattcagtttgttatgttccttattagatatgtcaaaaggacaaacacaacacatttatatacatttaatattgattcaaagtttatga |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32610888 |
attcttatggttattcagtttgttatgttccttattagatatgtcaaagggacaaacacaacacatttatatacatttaatattgattcaaagtttatga |
32610789 |
T |
|
| Q |
107 |
tttatgaaggggtgttacatctttgtaagtgttaagaactatttaattgtttttaggagtgtgccagctttacagtctataaacagataaaattatattc |
206 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
32610788 |
tttatgaaggggtgttacagctttgtaagtattaagaactatttaattgtttttaggagagtgccagctttacactctataaacagataaaattatattc |
32610689 |
T |
|
| Q |
207 |
aactttttacatgcaaataagaaaaaatatgactaaaattatcaaatttgtttatgtgatgagtacatttctttccttatttcttgtcgcaacggtatct |
306 |
Q |
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| T |
32610688 |
aactttttacatgcaaataagaaaaaatatgactaaaattatcaaatttgtttatgtgatgagtacatttctttccttatttcttgtcgcaacggtatct |
32610589 |
T |
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| Q |
307 |
ggtaagcannnnnnncatccttttcaaattacattatttactttgtagttcgtaaatcatacacaatagat |
377 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32610588 |
ggtaagcaattttttcatccttttcaaattacattatttactttgtagtttgtaaatcatacacaatagat |
32610518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 424 - 681
Target Start/End: Complemental strand, 32610472 - 32610212
Alignment:
| Q |
424 |
cagcacataatccttgtaaaacggttgttggttgtccacctc---atccgtatagttttgttgttactgttaagtgtgttcgtcgcttgtgtatatataa |
520 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32610472 |
cagcacataatccttgtaaaacggttgttgattgtccacctcctcatccgtatggttttgttgttgctgttaagtgtgttcgtcgcttgtgtatatataa |
32610373 |
T |
|
| Q |
521 |
tgtacatcttcatacttgaaagtttaatctatgtatacgagactcaagagagtccaaaaatgccatgcagaaaattatgagttcttgtgcgagaaatata |
620 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32610372 |
tgtacatcttcatacttgaaagttgaatctatgtatacgagactcaagagagtccaaaaatgccatgcagaaaattatgagttcttgtgcgagaaatata |
32610273 |
T |
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| Q |
621 |
ccgtacactagaatattacataatttaatcattttattattgtgtttgcacctaataattg |
681 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32610272 |
ccgtacgctagaatattacataatctaatcattttattattgtgtttgcacctaataattg |
32610212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 299
Target Start/End: Complemental strand, 32573729 - 32573613
Alignment:
| Q |
183 |
ctataaacagataaaattatattcaactttttacatgcaaataagaaaaaatatgactaaaattatcaaatttgtttatgtgatgagtacatttctttcc |
282 |
Q |
| |
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||||||| |||||||| ||||||||| ||||||||||||| | |||| |||| || |||||||||| ||||||||||| | || | |||||||| | |
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| T |
32573729 |
ctataaaatgataaaatcatattcaaccttttacatgcaaagagaaaaagttatggctgaaattatcaattttgtttatgtcacgattctatttcttttc |
32573630 |
T |
|
| Q |
283 |
ttatttcttgtcgcaac |
299 |
Q |
| |
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|| |||| ||||||||| |
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| T |
32573629 |
ttctttcatgtcgcaac |
32573613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 32573907 - 32573835
Alignment:
| Q |
7 |
attcttatggttattcagtttgttatgttccttattagatatgtcaaaaggacaaacacaacacatttatata |
79 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||| |||| |||||| ||| ||||||||||| ||||| |
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| T |
32573907 |
attcttatggttagtcactttgttatgttccttattaagaatgttaaaagggcaagcacaacacattgatata |
32573835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 299
Target Start/End: Complemental strand, 32581107 - 32580991
Alignment:
| Q |
183 |
ctataaacagataaaattatattcaactttttacatgcaaataagaaaaaatatgactaaaattatcaaatttgtttatgtgatgagtacatttctttcc |
282 |
Q |
| |
|
||||||| |||||||| ||||||||| ||||||||||||| | |||| |||||| ||||||| || ||||||||||| | || | |||||||||| |
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|
| T |
32581107 |
ctataaagtgataaaatcatattcaacattttacatgcaaagagaaaaagcaatgactgaaattattaattttgtttatgtcacgattctatttctttcc |
32581008 |
T |
|
| Q |
283 |
ttatttcttgtcgcaac |
299 |
Q |
| |
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|| |||| ||||||||| |
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| T |
32581007 |
ttgtttcgtgtcgcaac |
32580991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 32392576 - 32392627
Alignment:
| Q |
242 |
aaattatcaaatttgtttatgtgatgagtacatttctttccttatttcttgt |
293 |
Q |
| |
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|||||||||||||||||||||| |||| | |||||||| |||||||||||| |
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| T |
32392576 |
aaattatcaaatttgtttatgttatgattttatttcttttcttatttcttgt |
32392627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 17503510 - 17503465
Alignment:
| Q |
210 |
tttttacatgcaaataagaaaaaatatgactaaaattatcaaattt |
255 |
Q |
| |
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||||||||| |||| |||||||||||||||||||||| |||||||| |
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| T |
17503510 |
tttttacatacaaagaagaaaaaatatgactaaaattctcaaattt |
17503465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 246
Target Start/End: Original strand, 19320139 - 19320172
Alignment:
| Q |
213 |
ttacatgcaaataagaaaaaatatgactaaaatt |
246 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
19320139 |
ttacatgcaaatgagaaaaaatatgactaaaatt |
19320172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 29684100 - 29684020
Alignment:
| Q |
213 |
ttacatgcaaataagaaaaaatatgactaaaattatcaaatttgtttatgtgatgagtacatttctttccttatttcttgt |
293 |
Q |
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|||||||||||| ||||||||||||||||| | | |||||| ||||||| |||| | |||||| ||| |||||||||| |
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|
| T |
29684100 |
ttacatgcaaatggaaaaaaatatgactaaaactcttaaatttatttatgttatgattttatttctctccctatttcttgt |
29684020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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