View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4804-Insertion-8 (Length: 680)
Name: NF4804-Insertion-8
Description: NF4804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4804-Insertion-8 |
 | |
|
| [»] chr6 (6 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 414; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 132 - 680
Target Start/End: Complemental strand, 4824830 - 4824298
Alignment:
| Q |
132 |
taaattaactccgtagcatgaattaagctcttttttgttaggaaattatgtgtgtgagtnnnnnnncaaactatgattgttaaaagatatttttatccac |
231 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4824830 |
taaattaactccgtagcatgaattgagctcttttttgttaggaaattatgtgtgtgagtaaaaaaacaaactatgattgttaaaagatatttttatccac |
4824731 |
T |
|
| Q |
232 |
aattttccggactaaaacttcaaagtgactattgtttaaacacctagataggttagaaaagaaaaaacggtgaagatttgttgcattagtgctggatatg |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4824730 |
aattttccggactaaaacttcaaagtgactattgtttaaacacctagataggttagaaaagaaaaaacggtgaagatttgttgcattagtgctggatatg |
4824631 |
T |
|
| Q |
332 |
ttgccggttcaacaatggcagccattgcattaaaatttccatcaaccgttgtaatggtcgttgatatcacaaaatcgtgcattgtagcatggtacaacga |
431 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||| | ||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4824630 |
ttgccggttcaacgatggcagccattgcattaaaatttacatcaactgatgtaacggtcgttgatatcacaaaatcgcgcattgtagcatggtacaacga |
4824531 |
T |
|
| Q |
432 |
tcaaattcctatctatcagccaggttttgatggtttagtaaagcaatgtcgcatcaaaaacctcttcttcggcaccaatgtttaaaaacatgtctacgaa |
531 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4824530 |
tcaaattcctatctatcagccaggttttgatggtttagtaaagcaatgtcgcatcaaaaacctcttcttcggcaccaatgtttaaaaacatg-------- |
4824439 |
T |
|
| Q |
532 |
gctgacattgtgtttatatcagtcaacacaacgacgaaaactagtggtctcggagttggcaaaagccggagatttggacgtattggggatagtgcggctt |
631 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
4824438 |
---gacattgtgtttatatcagtcaacacaacgacgaaaactagtggtctcggagttgg-aaaagccggagattt-gacgtatt-gggatagtgcggctt |
4824345 |
T |
|
| Q |
632 |
gggatgatcaccgatgtctcaagtccgacaaaaatttttgtagagaaat |
680 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
4824344 |
-gaatgatcaccgatgtctcaagtccgac-aaaattgttgtagagaaat |
4824298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 4824996 - 4824872
Alignment:
| Q |
8 |
ccttgtaatgcaattcaatacagtttctttgtaatgtttagaagactatannnnnnngtatttaattgacatgttacttttcagtttcatgataaatact |
107 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |||||| | ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4824996 |
ccttgtaatgcaattcaatacagtttcgttgtaatgtttaaaagactgtctctttttgtatttaattgacatgttaattttcagtttcatgataaatact |
4824897 |
T |
|
| Q |
108 |
actttctgttgcaaggaactagatt |
132 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
4824896 |
actttctgttgcaaggaactagatt |
4824872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 431 - 546
Target Start/End: Complemental strand, 4804024 - 4803909
Alignment:
| Q |
431 |
atcaaattcctatctatcagccaggttttgatggtttagtaaagcaatgtcgcatcaaaaacctcttcttcggcaccaatgtttaaaaacatgtctacga |
530 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||| | |||||||||||||||| ||| |||| ||||| ||| ||||| ||||||||||||| || |
|
|
| T |
4804024 |
atcaacttcctatctatgagccaggtattgatgatgtagtaaagcaatgtcgatgcaagtaccttgtcttcaacactgatgttgaaaaacatgtctatga |
4803925 |
T |
|
| Q |
531 |
agctgacattgtgttt |
546 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4803924 |
agctgacattgtgttt |
4803909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 388 - 560
Target Start/End: Complemental strand, 4819664 - 4819492
Alignment:
| Q |
388 |
gtcgttgatatcacaaaatcgtgcattgtagcatggtacaacgatcaaattcctatctatcagccaggttttgatggtttagtaaagcaatgtcgcatca |
487 |
Q |
| |
|
|||||||||||| | |||||| | |||| || ||| ||||| ||||| ||||||||||| || | ||| |||||| | ||||||||||||||||| || |
|
|
| T |
4819664 |
gtcgttgatatctcgaaatcgcgtattgcagtgtggcacaacaatcaagttcctatctatgagtccggtcttgatgatgtagtaaagcaatgtcgcggca |
4819565 |
T |
|
| Q |
488 |
aaaacctcttcttcggcaccaatgtttaaaaacatgtctacgaagctgacattgtgtttatatcagtcaacac |
560 |
Q |
| |
|
| | | | |||||| ||| | ||| |||||||||||||||||| ||| || |||| | |||| |||||||| |
|
|
| T |
4819564 |
agagctttttcttcagcattcaagttgaaaaacatgtctacgaagttgaaatagtgtctgtatccgtcaacac |
4819492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 551
Target Start/End: Original strand, 4797943 - 4798069
Alignment:
| Q |
425 |
acaacgatcaaattcctatctatcagccaggttttgatggtttagtaaagcaatgtcgcatcaaaaacctcttcttcggcaccaatgtttaaaaacatgt |
524 |
Q |
| |
|
|||| |||||| || | |||||| | |||||| |||||| | |||||||||||| |||| ||| ||||| |||||| |||| ||||| |||||||||| |
|
|
| T |
4797943 |
acaatgatcaacttgccatctatgaaccaggtcttgatgatgtagtaaagcaatatcgcggcaagaaccttttcttcagcactgatgttaaaaaacatgt |
4798042 |
T |
|
| Q |
525 |
ctacgaagctgacattgtgtttatatc |
551 |
Q |
| |
|
| | |||||||||| |||||| |||| |
|
|
| T |
4798043 |
ccatgaagctgacacagtgtttgtatc |
4798069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 559
Target Start/End: Complemental strand, 10779452 - 10779288
Alignment:
| Q |
394 |
gatatcacaaaatcgtgcattgtagcatggtacaacgatcaaattcctatctatcagccaggttttgatggtttagtaaagcaatgtcgcatcaaaaacc |
493 |
Q |
| |
|
|||||| | |||||| |||||| || ||| ||||| ||||| ||||||||||| ||| | | ||||| | |||||||| ||||||||| ||| | || |
|
|
| T |
10779452 |
gatatctcgaaatcgcgcattgcagtgtggaacaacaatcaacttcctatctatgagcaaaatcttgattatgtagtaaagtaatgtcgcagcaaga-cc |
10779354 |
T |
|
| Q |
494 |
tcttcttcggcaccaatgtttaaaaacatgtctacgaagctgacattgtgtttatatcagtcaaca |
559 |
Q |
| |
|
| |||||| |||| ||||| ||||||||||||| |||||| | ||||||||| ||| ||||||| |
|
|
| T |
10779353 |
ttttcttcagcactgatgttgaaaaacatgtctatgaagctaaaattgtgtttgtatttgtcaaca |
10779288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 467 - 594
Target Start/End: Complemental strand, 18937667 - 18937540
Alignment:
| Q |
467 |
tagtaaagcaatgtcgcatcaaaaacctcttcttcggcaccaatgtttaaaaacatgtctacgaagctgacattgtgtttatatcagtcaacacaacgac |
566 |
Q |
| |
|
|||||||| |||||| | ||||||||| ||||| ||| ||||| |||| ||| ||||||||| ||||||||| || |||| |||||||||||||| |
|
|
| T |
18937667 |
tagtaaagtaatgtcacggcaaaaaccttttctttagcattgatgttgaaaagcatttctacgaagttgacattgttattgtatccgtcaacacaacgac |
18937568 |
T |
|
| Q |
567 |
gaaaactagtggtctcggagttggcaaa |
594 |
Q |
| |
|
| |||| | ||||| |||||||||||| |
|
|
| T |
18937567 |
tagaacttgcggtctaggagttggcaaa |
18937540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 19327414 - 19327355
Alignment:
| Q |
291 |
agaaaaaacggtgaagatttgttgcattagtgctggatatgttgccggttcaacaatggc |
350 |
Q |
| |
|
|||||||| ||||||||||||||||||| | ||||| ||||||| ||| |||||||||| |
|
|
| T |
19327414 |
agaaaaaatggtgaagatttgttgcattggagctggctatgttggtggtccaacaatggc |
19327355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 3665277 - 3665212
Alignment:
| Q |
295 |
aaaacggtgaagatttgttgcattagtgctggatatgttgccggttcaacaatggcagccattgca |
360 |
Q |
| |
|
|||| |||||||||||| |||||| |||| |||||||| | ||| |||||||||||| ||||||| |
|
|
| T |
3665277 |
aaaatggtgaagatttgctgcattggtgccggatatgtcggtggtccaacaatggcagtcattgca |
3665212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University