View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4804-Insertion-9 (Length: 503)

Name: NF4804-Insertion-9
Description: NF4804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4804-Insertion-9
NF4804-Insertion-9
[»] chr3 (18 HSPs)
chr3 (8-503)||(36002275-36002770)
chr3 (243-378)||(36023603-36023737)
chr3 (243-361)||(23351901-23352019)
chr3 (18-172)||(23463039-23463193)
chr3 (248-353)||(23439874-23439979)
chr3 (242-378)||(23386234-23386370)
chr3 (242-378)||(23404608-23404744)
chr3 (8-59)||(36023380-36023431)
chr3 (18-172)||(23439668-23439822)
chr3 (248-353)||(23472409-23472514)
chr3 (18-112)||(23386037-23386131)
chr3 (18-60)||(23447048-23447090)
chr3 (18-60)||(23478348-23478390)
chr3 (19-112)||(23472204-23472297)
chr3 (20-60)||(23498829-23498869)
chr3 (18-112)||(23404408-23404502)
chr3 (18-60)||(23453818-23453860)
chr3 (242-306)||(23463239-23463303)
[»] chr2 (4 HSPs)
chr2 (8-188)||(16337574-16337754)
chr2 (8-188)||(16121414-16121594)
chr2 (242-378)||(16121612-16121747)
chr2 (242-378)||(16337421-16337556)
[»] chr4 (2 HSPs)
chr4 (8-188)||(12897074-12897254)
chr4 (242-303)||(12896971-12897032)


Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 8 - 503
Target Start/End: Original strand, 36002275 - 36002770
Alignment:
8 acattaattaatttgtacctgaattccatcccatagctttttaagtttgctattggtcatgctaagttgtacaagattttcagcacagaagcttgctggc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
36002275 acattaattaatttgtacctgaattccatcccatagctttttaagtttgctattggtcatgctaagttgtacaagattttcagcacagaagcttgctggc 36002374  T
108 aaagaattaagtgggaatgattcccatttaaggtacctcaatttatcagacaaccactcaagaccttcatgaaggtgcacaatggatccttcatttcttc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
36002375 aaagaattaagtgggaatgattcccatttaaggtacctcaatttatcagacaaccactcaagaccttcatgaaggtgcacaatggatccttcatttcttc 36002474  T
208 catttgtcagaaatatattatgtaaactattaaggatatgaagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccccaaa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
36002475 catttgtcagaaatatattatgtaaactattaaggatatgaagatatcttaagttggtcatgcttttaaatgaagcagagctcaagtatagatccccaaa 36002574  T
308 gtcacaaatatcgaaaaatataacttccacaacttcagttccctgaaaaacaaattttaaaataataattatattagccaatgttgccatacatatttca 407  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
36002575 gtcacaaatatcgaaaaatataacttcaacaacttcagttccctgaaaaacaaaatttaaaataataattatattagccaatgttgccatacatatttca 36002674  T
408 taatcaaatatatgcatgcattttttaatagaagtaattaagttttcgacttaccttgttatatttcaataaatcatacacttccttaggatccca 503  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
36002675 taatcaaatatatgcatgcattttttaatagaagtaattgagttttcgacttaccttgttatatttcaataaatcatacacttccttaggatccca 36002770  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 243 - 378
Target Start/End: Original strand, 36023603 - 36023737
Alignment:
243 atatgaagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccccaaagtcacaaatatcgaaaaatataacttccacaactt 342  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| | ||  ||  |||| ||||| |  || ||||| |||||||    
36023603 atatgaagacatcttaagttggtcatgcttttaaaggaatcagaggtcaagtatagatctctaatttctgaaatgtcgaatatgatgacttcaacaactt 36023702  T
343 cagttccctgaaaaacaaattttaaaataataatta 378  Q
    | ||||||| ||||||||| |||| |||||||||||    
36023703 cggttccctaaaaaacaaa-tttagaataataatta 36023737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 361
Target Start/End: Original strand, 23351901 - 23352019
Alignment:
243 atatgaagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccccaaagtcacaaatatcgaaaaatataacttccacaactt 342  Q
    |||| ||||||||||||||| ||||| |||||||||||| ||||  ||||||||||||||||||  ||   | ||||||| | |||| ||||||||||||    
23351901 atatcaagatatcttaagtttgtcatccttttaaaggaatcagacttcaagtatagatccccaacttctgtactatcgaatattataccttccacaactt 23352000  T
343 cagttccctgaaaaacaaa 361  Q
    ||||||||||| |||||||    
23352001 cagttccctgacaaacaaa 23352019  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 23463039 - 23463193
Alignment:
18 atttgtacctgaattccatcccatagctttttaagtttgctattggtcatgctaagttgtacaagattttcagcacagaagcttgctggcaaagaattaa 117  Q
    ||||||||||||| ||||||||| ||||||||||| |||||||   |||||| ||| | ||||||  |||||||||| ||| ||| ||||||||| | ||    
23463039 atttgtacctgaactccatcccagagctttttaagcttgctatgactcatgcaaagatatacaagcatttcagcacaaaaggttgatggcaaagactcaa 23463138  T
118 gtgggaatgattcccatttaaggtacctcaatttatcagacaaccactcaagacc 172  Q
    |   | ||  | |||||  ||| ||||||||||||||||| | ||||||||||||    
23463139 gacagtatcttacccatagaagatacctcaatttatcagaaatccactcaagacc 23463193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 353
Target Start/End: Original strand, 23439874 - 23439979
Alignment:
248 aagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccccaaagtcacaaatatcgaaaaatataacttccacaacttcagtt 347  Q
    ||||||||||||||| | ||| ||| |||||||| ||||  ||||||||||||||||||  ||   | ||||||| | |||| |||||||||||||||||    
23439874 aagatatcttaagtttgccatccttctaaaggaatcagacttcaagtatagatccccaacttccgtagtatcgaatattataccttccacaacttcagtt 23439973  T
348 ccctga 353  Q
    ||||||    
23439974 ccctga 23439979  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 242 - 378
Target Start/End: Original strand, 23386234 - 23386370
Alignment:
242 gatatgaagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccccaaagtcacaaatatcgaaaaatataacttccacaact 341  Q
    ||||| |||||||||||| || ||||| ||| |||||||| ||||  ||||||||||||||||||  ||   | |||| || | |||| |||||||||||    
23386234 gatattaagatatcttaaatttgtcatccttctaaaggaatcagacttcaagtatagatccccaacttccgtactatccaatattataccttccacaact 23386333  T
342 tcagttccctgaaaaacaaattttaaaataataatta 378  Q
    |||||||||||| ||| |||  ||| | |||||||||    
23386334 tcagttccctgacaaataaaaattagattaataatta 23386370  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 242 - 378
Target Start/End: Original strand, 23404608 - 23404744
Alignment:
242 gatatgaagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccccaaagtcacaaatatcgaaaaatataacttccacaact 341  Q
    ||||| ||||||||||||||| ||||| ||| |||||||| ||||  ||||||| | ||||||||  ||   | ||||||| | |||| |||||||||||    
23404608 gatattaagatatcttaagtttgtcatccttctaaaggaatcagacttcaagtaaatatccccaacatccgtactatcgaatattataccttccacaact 23404707  T
342 tcagttccctgaaaaacaaattttaaaataataatta 378  Q
    |||||||||||| ||| |||  ||| | |||||||||    
23404708 tcagttccctgacaaataaaaattagattaataatta 23404744  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 36023380 - 36023431
Alignment:
8 acattaattaatttgtacctgaattccatcccatagctttttaagtttgcta 59  Q
    ||||||||||||||||||||||||||||||||| |||||||| || ||||||    
36023380 acattaattaatttgtacctgaattccatcccaaagcttttttagcttgcta 36023431  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 23439668 - 23439822
Alignment:
18 atttgtacctgaattccatcccatagctttttaagtttgctattggtcatgctaagttgtacaagattttcagcacagaagcttgctggcaaagaattaa 117  Q
    ||||||||||||| |||||| || || |||||||| |||||||  ||||||||||| | ||||||  |||||||||| ||| ||| ||| ||||| | ||    
23439668 atttgtacctgaactccatctcagagatttttaagcttgctatgagtcatgctaagctctacaagcatttcagcacaaaagtttgatggaaaagactaaa 23439767  T
118 gtgggaatgattcccatttaaggtacctcaatttatcagacaaccactcaagacc 172  Q
    |     ||   ||||||| ||||||||||||||||||||| | |||||| |||||    
23439768 gacaatatccctcccattgaaggtacctcaatttatcagaaagccactcgagacc 23439822  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 353
Target Start/End: Original strand, 23472409 - 23472514
Alignment:
248 aagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccccaaagtcacaaatatcgaaaaatataacttccacaacttcagtt 347  Q
    ||||||||||||||| ||||| ||| |||||||| ||||  ||||||||||||||||||  ||   | ||||||| | |||| ||||| |||||| ||||    
23472409 aagatatcttaagtttgtcatccttctaaaggaatcagacttcaagtatagatccccaacttccgtactatcgaatattataccttccccaactttagtt 23472508  T
348 ccctga 353  Q
    ||||||    
23472509 ccctga 23472514  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 23386037 - 23386131
Alignment:
18 atttgtacctgaattccatcccatagctttttaagtttgctattggtcatgctaagttgtacaagattttcagcacagaagcttgctggcaaaga 112  Q
    ||||||||||||| ||||||||| ||||||||||| ||||| |   |||||| ||| | ||||||  |||||||||| ||| ||| |||||||||    
23386037 atttgtacctgaactccatcccagagctttttaagcttgctttgattcatgcaaagctctacaagcatttcagcacaaaaggttgatggcaaaga 23386131  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 23447048 - 23447090
Alignment:
18 atttgtacctgaattccatcccatagctttttaagtttgctat 60  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
23447048 atttgtacctgaactccatcccatagctttttaagcttgctat 23447090  T

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Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 23478348 - 23478390
Alignment:
18 atttgtacctgaattccatcccatagctttttaagtttgctat 60  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
23478348 atttgtacctgaactccatcccatagctttttaagcttgctat 23478390  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 23472204 - 23472297
Alignment:
19 tttgtacctgaattccatcccatagctttttaagtttgctattggtcatgctaagttgtacaagattttcagcacagaagcttgctggcaaaga 112  Q
    |||||||||||| ||||||||| ||||||||||| |||||||  ||||||  ||| | ||||||  |||||||||| ||| ||| ||| |||||    
23472204 tttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctctacaagcatttcagcacaaaagtttgatggaaaaga 23472297  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 23498829 - 23498869
Alignment:
20 ttgtacctgaattccatcccatagctttttaagtttgctat 60  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
23498829 ttgtacctgaactccatcccatagctttttaagcttgctat 23498869  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 23404408 - 23404502
Alignment:
18 atttgtacctgaattccatcccatagctttttaagtttgctattggtcatgctaagttgtacaagattttcagcacagaagcttgctggcaaaga 112  Q
    ||||||||||||| ||||||||| ||||||||||| ||||| |  | ||||| ||| | ||||||  |||||||||| ||  ||| |||||||||    
23404408 atttgtacctgaactccatcccagagctttttaagcttgctttgagccatgcaaagctctacaagcatttcagcacaaaaagttgatggcaaaga 23404502  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 23453818 - 23453860
Alignment:
18 atttgtacctgaattccatcccatagctttttaagtttgctat 60  Q
    ||||||||||||| ||||||||| ||||||||||| |||||||    
23453818 atttgtacctgaactccatcccagagctttttaagcttgctat 23453860  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 23463239 - 23463303
Alignment:
242 gatatgaagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccccaa 306  Q
    |||||||||||||||||| || ||||| ||| |||||||| ||||  ||||||| | ||||||||    
23463239 gatatgaagatatcttaaatttgtcatccttctaaaggaatcagacttcaagtaaatatccccaa 23463303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 16337754 - 16337574
Alignment:
8 acattaattaatttgtacctgaattccatcccatagctttttaagtttgctattggtcatgctaagttgtacaagattttcagcacagaagcttgctggc 107  Q
    |||||||||||||||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||||||| |||| |||||| ||| ||| ||||    
16337754 acattaattaatttgtacctgaattctatcccaaagctttctaagcttgctatgggtcatgctaagttgtacaaggttttgagcacaaaaggttgatggc 16337655  T
108 aaagaattaagtgggaatgattcccatttaaggtacctcaatttatcagacaaccactcaagaccttcatgaaggtgcaca 188  Q
    ||||| | |||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| || || ||||||    
16337654 aaagattcaagtggaaatgattcccaatgaaggtacctcaatttatcagacaaccactcaagaccttcttggagatgcaca 16337574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 16121414 - 16121594
Alignment:
8 acattaattaatttgtacctgaattccatcccatagctttttaagtttgctattggtcatgctaagttgtacaagattttcagcacagaagcttgctggc 107  Q
    |||||||||||||||||||||||||| |||||| |||||| |||| ||||||| |||||||||||||| |||||| |||| || ||| ||| ||| ||||    
16121414 acattaattaatttgtacctgaattctatcccaaagctttctaagcttgctatgggtcatgctaagttctacaagcttttgaggacaaaaggttgatggc 16121513  T
108 aaagaattaagtgggaatgattcccatttaaggtacctcaatttatcagacaaccactcaagaccttcatgaaggtgcaca 188  Q
    ||||| | |||||| ||||||||||| | |||||| |||||||||||||||||||||||||||||||| || || ||||||    
16121514 aaagactcaagtggaaatgattcccaatgaaggtagctcaatttatcagacaaccactcaagaccttcttggagatgcaca 16121594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 378
Target Start/End: Original strand, 16121612 - 16121747
Alignment:
242 gatatgaagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccccaaagtcacaaatatcgaaaaatataacttccacaact 341  Q
    |||||||||  ||||||||||| ||||||| | ||||||    ||||||||||||| ||| ||||  | | || |||| || | ||||||||| ||| |     
16121612 gatatgaagtaatcttaagttgatcatgctctcaaaggatctggagctcaagtatacatcaccaattttagaagtatcaaatagtataacttcaacagca 16121711  T
342 tcagttccctgaaaaacaaattttaaaataataatta 378  Q
    ||||||||||| |||||||| |||  |||||||||||    
16121712 tcagttccctg-aaaacaaaattttgaataataatta 16121747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 378
Target Start/End: Complemental strand, 16337556 - 16337421
Alignment:
242 gatatgaagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccccaaagtcacaaatatcgaaaaatataacttccacaact 341  Q
    |||||||||  ||||||||||| ||||||| | ||||||    ||||||||||||| ||| ||||  | | || |||| || | ||||||||| ||| |     
16337556 gatatgaagtaatcttaagttgatcatgctctcaaaggatctggagctcaagtatacatcaccaattttagaagtatcaaatagtataacttcaacagca 16337457  T
342 tcagttccctgaaaaacaaattttaaaataataatta 378  Q
    ||||||||||| |||||||| |||  |||||||||||    
16337456 tcagttccctg-aaaacaaaattttgaataataatta 16337421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 12897254 - 12897074
Alignment:
8 acattaattaatttgtacctgaattccatcccatagctttttaagtttgctattggtcatgctaagttgtacaagattttcagcacagaagcttgctggc 107  Q
    |||||||| ||| |||||||||||| ||| ||| ||||||||||| ||||||| |  ||||||||||||||||||   ||| ||||| ||| ||| ||||    
12897254 acattaataaatgtgtacctgaatttcattccaaagctttttaagcttgctatggcgcatgctaagttgtacaagccattcggcacaaaaggttgatggc 12897155  T
108 aaagaattaagtgggaatgattcccatttaaggtacctcaatttatcagacaaccactcaagaccttcatgaaggtgcaca 188  Q
    ||||| | ||||||||||| |||||| | ||||| ||||||||||||||||||||| |||||||||||| | |||||||||    
12897154 aaagactcaagtgggaatgcttcccaataaaggtgcctcaatttatcagacaaccattcaagaccttcaaggaggtgcaca 12897074  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 12897032 - 12896971
Alignment:
242 gatatgaagatatcttaagttggtcatgcttttaaaggaagcagagctcaagtatagatccc 303  Q
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12897032 gatatgaagatatcttaagttggtcatgtttttaaatgaatcagagctcaagtatagatccc 12896971  T

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