View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4804_low_1 (Length: 584)

Name: NF4804_low_1
Description: NF4804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4804_low_1
NF4804_low_1
[»] chr3 (13 HSPs)
chr3 (19-580)||(36001718-36002279)
chr3 (344-392)||(23446685-23446733)
chr3 (345-392)||(23453461-23453508)
chr3 (345-392)||(23477985-23478032)
chr3 (345-392)||(23498434-23498481)
chr3 (345-392)||(23351382-23351429)
chr3 (204-254)||(23351520-23351570)
chr3 (204-252)||(23404231-23404279)
chr3 (204-252)||(23462850-23462898)
chr3 (199-254)||(23471958-23472013)
chr3 (345-391)||(23385721-23385767)
chr3 (204-241)||(23385871-23385908)
chr3 (199-252)||(23439424-23439477)
[»] chr4 (1 HSPs)
chr4 (137-564)||(12897349-12897779)
[»] chr2 (2 HSPs)
chr2 (123-449)||(16337865-16338191)
chr2 (123-449)||(16120973-16121299)


Alignment Details
Target: chr3 (Bit Score: 522; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 19 - 580
Target Start/End: Complemental strand, 36002279 - 36001718
Alignment:
Q  19 aatgtgtttgtatatacttgttatttttattttgttgaggtgcatttatataagctcattcatagaatcgcgccagagcaaagacccatgcattattatg 118  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36002279 aatgtgtttatatatacttgttatttttattttgttgaggtgcatttatataagctcattcatagaatcgcgccagagcaaagacccatgcattattatg 36002180  T
Q  119 attgaatttagtgctttctgaacactgtgatgtttcttttatgctacagaaactagacaatttaatgaaaattgcgcttgattattccaaagacctggtt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  36002179 attgaatttagtgctttctgaacactgtgatgtttcttttatgctacagaaactagacaatttgatgaaaattgagcttgattattccaaagacctggtt 36002080  T
Q  219 gagatcccagacttatctagggcgccaaatcttgaactagtatctctttcctattgtgagaatctctgtaaactccatgaatccattttgactgccccca 318  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36002079 gagataccagacttatctagggcgccaaatcttgaactagtatctctttcctattgtgagaatctctgtaaactccatgaatccattttgactgccccca 36001980  T
Q  319 agcttagttatctacgtttagacggctgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctcttaaatcactcagtctcaatgattgttc 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  36001979 agcttagttatctacgtttagacggctgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctcttgaatcactcagtctcaataattgttc 36001880  T
Q  419 atctcttgtggaattttctgtgacatcagaaaatatgactgggttgtatttatcttgtactgctatacaagaattaccctcatccatgtggcataataga 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  36001879 atctcttgtggaattttctgtgacatcagaaaatatgactgggttgtatttatcttgtaccgctatacaagaattaccctcatccatgtggcgtaataga 36001780  T
Q  519 aaactgactcatctcaatctaagtaaatgtaagaagcttaacattgctgagaataatctacc 580  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  36001779 aaactgactcatctcaatctaagtaaatgtaagaagcttaacattgctgagaagaatttacc 36001718  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 23446733 - 23446685
Alignment:
Q  344 ctgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctctt 392  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  23446733 ctgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctctt 23446685  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 392
Target Start/End: Complemental strand, 23453508 - 23453461
Alignment:
Q  345 tgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctctt 392  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  23453508 tgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctctt 23453461  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 392
Target Start/End: Complemental strand, 23478032 - 23477985
Alignment:
Q  345 tgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctctt 392  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  23478032 tgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctctt 23477985  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 392
Target Start/End: Complemental strand, 23498481 - 23498434
Alignment:
Q  345 tgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctctt 392  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  23498481 tgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctctt 23498434  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 392
Target Start/End: Complemental strand, 23351429 - 23351382
Alignment:
Q  345 tgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctctt 392  Q
    |||| ||||||| ||||||| |||||||||||||||||||||||||||    
T  23351429 tgcataaagattgaaagccttaaaaccaacattcattcaaaatctctt 23351382  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 23351570 - 23351520
Alignment:
Q  204 tccaaagacctggttgagatcccagacttatctagggcgccaaatcttgaa 254  Q
    |||||||| ||| |||||||||||||||||||||||||  |||||||||||    
T  23351570 tccaaagatctgattgagatcccagacttatctagggctacaaatcttgaa 23351520  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 23404279 - 23404231
Alignment:
Q  204 tccaaagacctggttgagatcccagacttatctagggcgccaaatcttg 252  Q
    |||||||| ||| |||||||||||||||||||||||||  |||||||||    
T  23404279 tccaaagatctgattgagatcccagacttatctagggctacaaatcttg 23404231  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 23462898 - 23462850
Alignment:
Q  204 tccaaagacctggttgagatcccagacttatctagggcgccaaatcttg 252  Q
    |||||||| ||| |||||||||||||||||||||||||  |||||||||    
T  23462898 tccaaagatctgattgagatcccagacttatctagggctacaaatcttg 23462850  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 23472013 - 23471958
Alignment:
Q  199 attattccaaagacctggttgagatcccagacttatctagggcgccaaatcttgaa 254  Q
    |||| |||||||| ||| ||||||||||| |||||||||||||  |||||||||||    
T  23472013 attactccaaagatctgattgagatcccaaacttatctagggctacaaatcttgaa 23471958  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 23385767 - 23385721
Alignment:
Q  345 tgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctct 391  Q
    |||| ||||||| ||||||| ||| ||||||||||||||||||||||    
T  23385767 tgcataaagattgaaagccttaaatccaacattcattcaaaatctct 23385721  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 23385908 - 23385871
Alignment:
Q  204 tccaaagacctggttgagatcccagacttatctagggc 241  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  23385908 tccaaagatctgattgagatcccagacttatctagggc 23385871  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 23439477 - 23439424
Alignment:
Q  199 attattccaaagacctggttgagatcccagacttatctagggcgccaaatcttg 252  Q
    |||| |||||||| ||| |||||||||| ||||||||||||||  |||||||||    
T  23439477 attactccaaagatctgattgagatccccgacttatctagggctacaaatcttg 23439424  T

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Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 137 - 564
Target Start/End: Original strand, 12897349 - 12897779
Alignment:
Q  137 tgaacactgtgatgtttcttttatgctacagaaactagacaatttaatgaaaattgcgcttgattattccaaagacctggttgagatcccagacttatct 236  Q
    |||||| ||||||||||||||| | |||||||| || |||||||| ||||  |||  ||||||||| ||||||||| || ||||||||||||||||||||    
T  12897349 tgaacaatgtgatgtttcttttttcctacagaagcttgacaatttgatgattattatgcttgattactccaaagacttgattgagatcccagacttatct 12897448  T
Q  237 agggcgccaaatcttgaactagtatctctttcctattgtgagaatctctgtaaactccatgaatccattttgactgcccccaagcttagttatctacgtt 336  Q
    | ||||||||| |||||||||||||||||||| ||||| |||| ||||||  ||||||||  ||||||||| |||||||| ||||||||  | |||  ||    
T  12897449 aaggcgccaaaacttgaactagtatctctttcttattgcgagagtctctgccaactccatccatccattttcactgccccgaagcttagagaactatatt 12897548  T
Q  337 tagacggctgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctcttaaatcactcagtctcaatgattgttcatctcttgtggaattttc 436  Q
    || | || |||||||||||| ||||||||||||| ||||||||||||||||||||   | |||||   |||| |||||||||||||||   ||| |||||    
T  12897549 taaaaggttgcaaaaagattgaaagcctgaaaactaacattcattcaaaatctctccgaacactcgagctcactgattgttcatctctcaaggagttttc 12897648  T
Q  437 tgtgacatcagaaaatatgactgggttgtatttatcttgtactgctatacaagaattaccctcatccatgtggcataatagaaaactgac---tcatctc 533  Q
     |||||||||||  | ||||    |||||  |||| | | ||||||||||| ||| | |||||||| || ||||  ||| | ||||| ||   || |||     
T  12897649 ggtgacatcagaggaaatgatgtcgttgtcgttatgtggcactgctatacacgaacttccctcatcaatttggcgcaattggaaactcacttatcgtctt 12897748  T
Q  534 aatctaagtaaatgtaagaagcttaacattg 564  Q
     |||||||| |||||||||||||||||||||    
T  12897749 gatctaagtgaatgtaagaagcttaacattg 12897779  T

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Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 123 - 449
Target Start/End: Original strand, 16337865 - 16338191
Alignment:
Q  123 aatttagtgctttctgaacactgtgatgtttcttttatgctacagaaactagacaatttaatgaaaattgcgcttgattattccaaagacctggttgaga 222  Q
    |||||| || |||||||||| ||||||||||||||  | |||||||| || ||||||||||  |  |||   |||||| | ||  |||||||| ||||||    
T  16337865 aatttaatgatttctgaacaatgtgatgtttctttcttcctacagaagcttgacaatttaacaatcattaaacttgataactctgaagacctgattgaga 16337964  T
Q  223 tcccagacttatctagggcgccaaatcttgaactagtatctctttcctattgtgagaatctctgtaaactccatgaatccattttgactgcccccaagct 322  Q
    | || |||||||| || || || |||||| || || |||||||| | ||||||| || ||||  | ||||||||   |||||||| | ||||||||||||    
T  16337965 ttccggacttatcaagagcaccgaatcttaaaatattatctcttgcttattgtgtgagtctccatcaactccatccttccattttcagtgcccccaagct 16338064  T
Q  323 tagttatctacgtttagacggctgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctcttaaatcactcagtctcaatgattgttcatct 422  Q
    |||  | ||| | ||| | || || ||||||||| |||||||   |||  |||||||||||||||||||  ||  |||   ||||| ||||||||||||     
T  16338065 tagagaactatgcttaaaaggttgtaaaaagattgaaagccttgtaactgacattcattcaaaatctctccaaagactggatctcactgattgttcatcc 16338164  T
Q  423 cttgtggaattttctgtgacatcagaa 449  Q
    || ||  |||||| |||||||||||||    
T  16338165 ctcgtacaattttgtgtgacatcagaa 16338191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 123 - 449
Target Start/End: Complemental strand, 16121299 - 16120973
Alignment:
Q  123 aatttagtgctttctgaacactgtgatgtttcttttatgctacagaaactagacaatttaatgaaaattgcgcttgattattccaaagacctggttgaga 222  Q
    |||||| || |||||||||| ||||||||||||||  | |||||||| || ||||||||||  |  |||   |||||| | ||  |||||||| ||||||    
T  16121299 aatttaatgatttctgaacaatgtgatgtttctttcttcctacagaagcttgacaatttaacaatcattaaacttgataactctgaagacctgattgaga 16121200  T
Q  223 tcccagacttatctagggcgccaaatcttgaactagtatctctttcctattgtgagaatctctgtaaactccatgaatccattttgactgcccccaagct 322  Q
    | || |||||||| || || || |||||| || || |||||||| | |||||||  | ||||  | ||||||||  ||||||||| | ||||||||||||    
T  16121199 ttccggacttatcaagagcaccgaatcttaaaatattatctcttgcttattgtgtaagtctccatcaactccatccatccattttcagtgcccccaagct 16121100  T
Q  323 tagttatctacgtttagacggctgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctcttaaatcactcagtctcaatgattgttcatct 422  Q
    |||  | ||| | ||| | || || | ||||||| |||||||   |||  |||||||||||||||||||   | ||||   ||||| ||||||||||||     
T  16121099 tagagaactatgcttaaaaggttgtacaaagattgaaagccttgtaactgacattcattcaaaatctctcctaacactggatctcactgattgttcatcc 16121000  T
Q  423 cttgtggaattttctgtgacatcagaa 449  Q
    || ||  |||||| |||||||||||||    
T  16120999 ctcgttcaattttgtgtgacatcagaa 16120973  T

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