View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4804_low_2 (Length: 246)
Name: NF4804_low_2
Description: NF4804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4804_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 31253760 - 31253976
Alignment:
| Q |
19 |
ggacagcactttccaattgctctatctacctcttcactcacctaaccaaatgaatcatataataaagtaagctttcatgagaaaattataactacataat |
118 |
Q |
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| T |
31253760 |
ggacagcactttccaattgctctatctacctcttcactcacctaaccaaatgaatcatataataaagtaagctttcatgagaaaattataactacataat |
31253859 |
T |
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| Q |
119 |
gagaaatacaagtagtattcaattaattaatgcaagattcgtagttaggtggagttggttctttgtagtatgaatagctaggcggagactgctgcaattg |
218 |
Q |
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| T |
31253860 |
gagaaatacaagtagtattcaattaattgatgcaagattcgtagttaggtggagttggttctttgtagtatgaatagctaggcggagactgctgcaattg |
31253959 |
T |
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| Q |
219 |
gagatttcatactgatg |
235 |
Q |
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| T |
31253960 |
gagatttcatactgatg |
31253976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 31244558 - 31244657
Alignment:
| Q |
130 |
gtagtattcaattaattaatgcaagattcgtagttaggtggagttggttctttgtagtatgaatagctaggcggagactgctgcaattggagatttcata |
229 |
Q |
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| T |
31244558 |
gtagtattcaaataattaatgcaagattcatagtttggtggagttggttttttgtagtatgaatagctaggcggagactactgcaattggagatttcata |
31244657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 31235295 - 31235378
Alignment:
| Q |
24 |
gcactttccaattgctctatctacctcttcactcacctaaccaaatgaatcatataataaagtaag-ctttcatgagaaaatta |
106 |
Q |
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| T |
31235295 |
gcactttccaattgctctatccacctcttcactcacctaacaaaatgaatcatataataaatgaagtttttcatgagaaaatta |
31235378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 31244437 - 31244520
Alignment:
| Q |
24 |
gcactttccaattgctctatctacctcttcactcacctaaccaaatgaatcatataataaagtaag-ctttcatgagaaaatta |
106 |
Q |
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| T |
31244437 |
gcactttccaattgctctatccacctcttcactcacctaacaaaatgaatcttataataaatgaagtttttcatgagaaaatta |
31244520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 31235419 - 31235459
Alignment:
| Q |
133 |
gtattcaattaattaatgcaagattcgtagttaggtggagt |
173 |
Q |
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| T |
31235419 |
gtattcaaataattaatgcaagattcatagttaggtggagt |
31235459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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