View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4805-Insertion-1 (Length: 849)
Name: NF4805-Insertion-1
Description: NF4805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4805-Insertion-1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 697; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 8 - 844
Target Start/End: Complemental strand, 8844291 - 8843461
Alignment:
| Q |
8 |
aactctttccaagctggctagttttccatcattgaagagtcatgagaaatgtggttttgttttcattcattcttttgtttgctcttctcatcttttgtgc |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8844291 |
aactctttccaagctggctagttttccatcattgaagagtcatgagaaatgtggttttgttttcattcattcttttgtttgctcttctcatcttttgtgc |
8844192 |
T |
|
| Q |
108 |
taatagaaccatcaaaagtgaagaaagatcatggatagttaatgaagcacaatctttttattaccatgtcaaagctaatgaacatgtttggccagtaagt |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8844191 |
taatagaaccatcaaaagtgaagaaagatcatggatagttaatgaagcacaatctttttattaccatgtcaaagctaatgaacatgtttggccagtaagt |
8844092 |
T |
|
| Q |
208 |
gttttgcatccattacaattatttccttttgaatacaatatctcttctactttgccatataataattctctcaagtgtctatttccttatataaatgtgt |
307 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8844091 |
gttttgcatctattacaattatttccttttgaatacaatatctcttctactttgctatataataattctctcaagtgtctatttccttatataaatgtgt |
8843992 |
T |
|
| Q |
308 |
gttattgtgtatagaatttgattgtttaatcattaataggatataagacttggatggcaaatcattgttggtaccttgattggaatctttggagcttcat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8843991 |
gttattgtgtatagaatttgattgtttaatcattaataggatataagacttggatggcaaatcattgttggtaccttgattggaatctttggagcttcat |
8843892 |
T |
|
| Q |
408 |
ttggaagtgtaggtggagttggtggtggtggcatctttgttccaatgctaatcttgattattggatttgatgcaaaatcagccactgctatttcaaaatg |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8843891 |
ttggaagtgtaggtggagttggtggtggtggcatctttgttccaatgctaatcttgattattggatttgatgcaaaatcagcaactgctatttcaaaatg |
8843792 |
T |
|
| Q |
508 |
taagagtctctatagttgttcatgacaaagtcaatagatatccatcacaattatcctctttagaaactgatttttctcaatggatctttgaaattgagat |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8843791 |
taagagtctctatagttgttcatgacaaagtcaatagatatccatcacaattatcctctttagaaactgatttttctcaatggatctttgaaattgagat |
8843692 |
T |
|
| Q |
608 |
ttctttgaaaatatttnnnnnnntaagtttttacatcgattgaagttttaatcgatgtaaaaagatgtnnnnnnnntgtaacaaagtttggtcctgttgg |
707 |
Q |
| |
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| T |
8843691 |
ttctttgaaaatatttaaaaaaataagtttttacatcgattgaagttttaatcgatgtaaaaaga-----------tgtaaaaaa---cggtcctgttgg |
8843606 |
T |
|
| Q |
708 |
taaggag---------aacccataaggccaccagagtctggggttcaattctcattatcagcgtgaaaattttgttcgtggataatatgtaagtactttt |
798 |
Q |
| |
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| T |
8843605 |
taaggagttcactcataacccataaggccaccagagtct-gggttcaattctcattattagcgtgaaaattttattcgtggataatatgtaagtactttt |
8843507 |
T |
|
| Q |
799 |
gtcagtgccctctgagttttgaagtttaccctgaccctagtgagct |
844 |
Q |
| |
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||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
8843506 |
gtcagtgccctctgagttttgaagtttgccctgactctagtgagct |
8843461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 22 - 163
Target Start/End: Complemental strand, 8846503 - 8846365
Alignment:
| Q |
22 |
tggctagttttccatcattgaagagtcatgagaaatgtggtttt-gttttcattcattcttttgtttgctcttctcatcttttgtgctaatagaaccatc |
120 |
Q |
| |
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||||||| ||||||||||| ||| ||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||| ||| |||||||| | | |
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| T |
8846503 |
tggctagctttccatcattaaag-gtcatgagaaacgtggtttttgttttcatacattcttttgtttgttcttctcatctttggtgttaatagaagtacc |
8846405 |
T |
|
| Q |
121 |
aaaagtgaagaaagatcatggatagttaatgaagcacaatctt |
163 |
Q |
| |
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|||| ||| ||| ||||||||||| ||||||||||||||| |
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| T |
8846404 |
aaaattgaggaatcatcatggatag---atgaagcacaatctt |
8846365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 404 - 512
Target Start/End: Complemental strand, 36476583 - 36476475
Alignment:
| Q |
404 |
tcatttggaagtgtaggtggagttggtggtggtggcatctttgttccaatgctaatcttgattattggatttgatgcaaaatcagccactgctatttcaa |
503 |
Q |
| |
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|||||||| | |||||| || ||||| || |||||||| ||||| || ||||| | | | ||| |||||||||||||||||||||| || || || |||| |
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| T |
36476583 |
tcatttggcactgtaggaggtgttggcgggggtggcatatttgtgcccatgcttaccctaattgttggatttgatgcaaaatcagcaacggcaatatcaa |
36476484 |
T |
|
| Q |
504 |
aatgtaaga |
512 |
Q |
| |
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||||||||| |
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| T |
36476483 |
aatgtaaga |
36476475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 396 - 512
Target Start/End: Complemental strand, 36466297 - 36466184
Alignment:
| Q |
396 |
ttggagcttcatttggaagtgtaggtggagttggtggtggtggcatctttgttccaatgctaatcttgattattggatttgatgcaaaatcagccactgc |
495 |
Q |
| |
|
||||| |||||||||| | || || || |||||||| |||||||| |||||| ||||| | | | ||||||||||| |||||||||||||| || || |
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| T |
36466297 |
ttggatcttcatttgggacggtgggaggtgttggtgggggtggcat---tgttcccatgcttacccttattattggattcgatgcaaaatcagcaacagc |
36466201 |
T |
|
| Q |
496 |
tatttcaaaatgtaaga |
512 |
Q |
| |
|
|| ||||||||||||| |
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|
| T |
36466200 |
aatatcaaaatgtaaga |
36466184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 407 - 512
Target Start/End: Original strand, 50747432 - 50747537
Alignment:
| Q |
407 |
tttggaagtgtaggtggagttggtggtggtggcatctttgttccaatgctaa-tcttgattattggatttgatgcaaaatcagccactgctatttcaaaa |
505 |
Q |
| |
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||||||||||| || || || |||||||||||||| || ||||| ||||| | |||| ||||||||||||||| | |||||| | |||||||| || ||| |
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| T |
50747432 |
tttggaagtgttggaggtgtaggtggtggtggcatattcgttcctatgctcagtctt-attattggatttgatcctaaatcatcgactgctatctccaaa |
50747530 |
T |
|
| Q |
506 |
tgtaaga |
512 |
Q |
| |
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||||||| |
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|
| T |
50747531 |
tgtaaga |
50747537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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