View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4805-Insertion-2 (Length: 847)
Name: NF4805-Insertion-2
Description: NF4805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4805-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-157; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 422 - 827
Target Start/End: Complemental strand, 5171810 - 5171405
Alignment:
| Q |
422 |
cttgttaaggcatctttatttccccgtgtgcatttgtggaggacaaaaacacccgcagatgccaaagacgagaaaatttaaannnnnnncaaatttcgcc |
521 |
Q |
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| T |
5171810 |
cttgttaaggcatctttatttccccgtgtacatttgtggaggacaaaaacacacgcatatgccaaagacgagaaaatttaaatttttt-caaattttgcg |
5171712 |
T |
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| Q |
522 |
aaggccacaaaccgacgcaaatgttacaccaaaacattgtcaagatagagcgtttacagacaccggttagttcaatgcctatgcattttgcggccgttta |
621 |
Q |
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| T |
5171711 |
aaggccacaaactgacgcaaatgttacaccaaaacattgtcaaaatagggcgtttaccgacactggttagttcaatgcctatgcattttgcggccgttta |
5171612 |
T |
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| Q |
622 |
aaaccatcactaatgttccagtaannnnnnnnnnnnn-aaatttcaaatatttgcatcgggaacagaccgacacaaatgtttatctggtacttctttatc |
720 |
Q |
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| T |
5171611 |
aaaccatcactaatgttccagtaatttttctttttttgaaattccaaatatttgcatcaggaacagaccgacacaaatgtttatctggtacttctttatc |
5171512 |
T |
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| Q |
721 |
cctatataaataatttcctttcatttctccattttcagtttttgttctctctacaatcgttcacactcccttctttctacatatttcttacttaattttt |
820 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5171511 |
cctatataaataatttcctttcatttctccattttcagtttttgttctccctacaatcgttcacactcccttctttctacatatttcttacttaattttt |
5171412 |
T |
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| Q |
821 |
actacaa |
827 |
Q |
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| T |
5171411 |
actacaa |
5171405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 193 - 333
Target Start/End: Complemental strand, 5171990 - 5171850
Alignment:
| Q |
193 |
ggtaagtgattgtcgtgagatttatttataactgttagcgacacataatgagacgtgttgagtggaaacttgtgctaaaagaatttcctaaatttcagcc |
292 |
Q |
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| T |
5171990 |
ggtaagtgactgtcgcgagatttatttataactgttagcgacacataatgagacatgttgagtggaaacttgtgctaaaagaatttcctaaatttcagcc |
5171891 |
T |
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| Q |
293 |
aatatttgcgatgggccaagggcccacacaaatttgcggcc |
333 |
Q |
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| T |
5171890 |
aatatttgcgatgggccaagggcccacacaaatttgcggcc |
5171850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 5172174 - 5172030
Alignment:
| Q |
8 |
taaatttcaatagcctctatttatcgcaaaaattcaaataaaaactttatatatcatttgtagtcgtaatcttaattcattacgatggtaagagttatag |
107 |
Q |
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| T |
5172174 |
taaatttcaatagcctctattgatcacaaaaattcaaataaaatctttatatatcatttgtagtcgtaatcttaattcattacgatggtaagagttatag |
5172075 |
T |
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| Q |
108 |
atcaaaatctcagtcggatgaaataaattatcgtgagatagaaga |
152 |
Q |
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| T |
5172074 |
atcaaaatctcagtcagatgaaataaattatcgtgagatagaaga |
5172030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 355 - 389
Target Start/End: Complemental strand, 5171845 - 5171811
Alignment:
| Q |
355 |
gcaaaagcctacacatatgcaaaagtcataatttt |
389 |
Q |
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| T |
5171845 |
gcaaaagcctacacatatgcaaaagtcataatttt |
5171811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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