View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4805-Insertion-4 (Length: 824)
Name: NF4805-Insertion-4
Description: NF4805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4805-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 577; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 20 - 807
Target Start/End: Original strand, 37892122 - 37892896
Alignment:
| Q |
20 |
ttctcacctgagttaaaactgaaaccgaagagtaaatttgtttctagaaagaaatttcaaaagacagagtctagaaaaaggaaagcacggaagaggtaaa |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37892122 |
ttctcacctgagttaaaactgaaaccgaagagtaaatttgtttctagaaagaaatttcaaaagacagagtctagaaaaaggaaagcacggaagaggtaaa |
37892221 |
T |
|
| Q |
120 |
gttatagcatgttatctcaaaatcgaattcaaaagttgagcttgtagtgttactgtgccttttaactgtgtatgcaacttaagatataagagtaatatat |
219 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37892222 |
gttatagcatgttgtctcaaaatcgaattcaaaagttgagcttgtagtgttactgtgccttttaactgtgtatgcaacttaagatataagagtaatatat |
37892321 |
T |
|
| Q |
220 |
tgaaattgattgatcttttgttatttttccctgaaatggtatccacttatgccatacatactgttgtggaagtaaactcctagaaacaggacttaccttc |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37892322 |
tgaaattgattgatcttttgttatttttccctgaaatggtatccacttatgccatacatactgttgtggaagtaaactcctagaaacaggacttaccttc |
37892421 |
T |
|
| Q |
320 |
aaattgtagttcaaattatgtttggttaggttttttaga-------gtttagggtttagacggaacgatttctttattcttacagatgtcaaagtttggt |
412 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
37892422 |
aaattgtagttcaaattatgtttggttagtttttttagagtttagggtttagggtttagaccggacgatttctttattcttacagatgtcaaagtttggt |
37892521 |
T |
|
| Q |
413 |
agctcaaacctcttaccattagaacttgtttggtagttaagatacgataatgatggtatataatagttctatcttgttttaatttatgatttaatttaat |
512 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37892522 |
agctcaaacctcttaccattagaacttgtttggtagtcaagataagataatgatggtatataatagttctatcttgttttaatttataatttaatttaat |
37892621 |
T |
|
| Q |
513 |
gacgcatgaacatgatattgatcatattaccttattaaactctcttgatttannnnnnnctttcatcaaatgctgtaatcaatttttactgctcaataat |
612 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
37892622 |
gacgcatgaacatgatattgatcatatcaccttatt-acctctcttgatttatttttttctttcatcaaatgctgtaatcaatttttactgctcaatatt |
37892720 |
T |
|
| Q |
613 |
aacttaagcatccttgaaggggttatatatattcccacgaagatgtaaaatagaaatgactttagaaattcaagtatactatactatattcaaaaggttg |
712 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
37892721 |
aacttacgcatccttgaa------------attcccacgaagatgtaaaatagaaatgactttagaaattcaag-----tatactatattc-aaaggttg |
37892802 |
T |
|
| Q |
713 |
acttgcaaaactttgttaacagggagaata-tgttattgtttaaagataatattggaaaagaaatatac-aaaccctcaccaaaagaacagttggaa |
807 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||| ||||||||||| ||||||||||||||| |
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| T |
37892803 |
acttgc-aaactttgttaacagggagaatattgttattgtttaaagataatatt-gagaagaataatacaaaaccctcacc-aaagaacagttggaa |
37892896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 37187271 - 37187574
Alignment:
| Q |
20 |
ttctcacctgagttaaaactgaaaccgaagagtaaatttgtttctagaaagaaatttcaaaagacagagtctagaaaaaggaaagcacggaagaggtaaa |
119 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||| |
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| T |
37187271 |
ttctcacctgagttaaaactgaaaccaaagagtaaatttgtttctagaaagaaatttcaaaagacggagtctagaagaaggaaagcacgaaagaggtaaa |
37187370 |
T |
|
| Q |
120 |
gttatagcatgttatctcaaaatcgaattcaaaagttgagcttgtagtgttactgtgccttttaactgtgtatgcaacttaagatataagagtaatatat |
219 |
Q |
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|||||||| |||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37187371 |
gttatagcctgttgtctcaaaatcgaattcagaagttgagcttgtaatgttactgtgccttttaactgtgtatgcaacttaatgtataagagtaatatat |
37187470 |
T |
|
| Q |
220 |
tgaaattgattgatcttttgttatttttccctgaaatggtatccacttatgccatacatactgttgtggaagtaaactcctagaaacaggacttaccttc |
319 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37187471 |
tgaaattgattggtcttttgttatttttccctgaaatggtatccacttatgccatacatactgttatggaagtaaactcctagaaacaggacttaccttc |
37187570 |
T |
|
| Q |
320 |
aaat |
323 |
Q |
| |
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|||| |
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| T |
37187571 |
aaat |
37187574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 614 - 817
Target Start/End: Original strand, 37187812 - 37188016
Alignment:
| Q |
614 |
acttaagcatccttgaaggggttatatatattcccacgaagatgtaaaatagaaatgactttagaaattcaagtatactatactata-----ttcaaaag |
708 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
37187812 |
acttaagcatccttgaaggg-ttatatatattcccaccaagatgtaaaatagaaatgactttagaaattcaagtatactatactatactatattcaaa-g |
37187909 |
T |
|
| Q |
709 |
gttgacttgcaaaactttgttaacagggagaatatgttattgtttaaagataatattggaaaagaaatatac-aaaccctcaccaaaagaacagttggaa |
807 |
Q |
| |
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|||||||||||| |||||||||| |||||||||||||||||||||||||||||||| || ||||| |||| ||||||||||| ||||||||||||||| |
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| T |
37187910 |
tttgacttgcaaa-ctttgttaacggggagaatatgttattgtttaaagataatatt-gagaagaataatacaaaaccctcacc-aaagaacagttggaa |
37188006 |
T |
|
| Q |
808 |
attaaatcct |
817 |
Q |
| |
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|||||||||| |
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| T |
37188007 |
attaaatcct |
37188016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 396 - 626
Target Start/End: Original strand, 37187575 - 37187796
Alignment:
| Q |
396 |
agatgtcaaagtttggtagctcaaacctcttaccattagaacttgtttggtagttaagatacgataatga---tggtatataatagttctatcttgtttt |
492 |
Q |
| |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||| |||||| | | |||||||||||||||||| |||||| |
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| T |
37187575 |
agatgtcaaagttggacagctcaaacctcttaccattagaacttgtttggtagtcaagataagataattatagttgtatataatagttctatcatgtttt |
37187674 |
T |
|
| Q |
493 |
aatttatgatttaatttaatgacgcatgaacatgatattgatcatattaccttattaaactctcttgatttannnnnnnctttcatcaaatgctgtaatc |
592 |
Q |
| |
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| |||| ||||||||||| ||||| | || || ||||||| |||||||| ||||| ||||||| |||||||||||||||||||| |
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| T |
37187675 |
agttta-----taatttaatgaggcatg-atat----ttaatcatatcaccttatt-aactcagttgattt-tttttttctttcatcaaatgctgtaata |
37187762 |
T |
|
| Q |
593 |
aatttttactgctcaataataacttaagcatcct |
626 |
Q |
| |
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| |||||||||||||| ||| ||||||||||||| |
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| T |
37187763 |
attttttactgctcaaaaatgacttaagcatcct |
37187796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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