View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4805-Insertion-6 (Length: 717)

Name: NF4805-Insertion-6
Description: NF4805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4805-Insertion-6
NF4805-Insertion-6
[»] chr1 (1 HSPs)
chr1 (8-676)||(44222774-44223438)


Alignment Details
Target: chr1 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 8 - 676
Target Start/End: Original strand, 44222774 - 44223438
Alignment:
Q  8 gttaaagtctatggatccaaacgtcttcattaatttcaaattgacaaattaatttggacccttgcttttcattgcagctagctaaagtgctacatttgga 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  44222774 gttaaagtctatggatccaaacgtcttcattaatttcaaattgacaaattaatttggacccttgcttttcattgcagctagctaaagtgccacatttaga 44222873  T
Q  108 aactttacttttcagaatatattccactgatcgcagtttaggaccagtggttgtgaattgcttgcaaccttgcttggaagtactaactaatataagaaca 207  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44222874 aactttgcttttcagaatatattccactgatcgcagtttaggaccagtggttgtgaattgcttgcaaccttgcttggaagtactaactaatataagaaca 44222973  T
Q  208 ttgatttggaacgaatgtaccaaaattataaatattctcaatgaggaaaaatgtctcttcctaccaattgtttcttataaaatggtgattctgggtgctt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44222974 ttgatttggaacgaatgtaccaaaattataaatattctcaatgaggaaaaatgtctcttcctaccaattgtttcttataaaatggtgattctgggtgctt 44223073  T
Q  308 ttttagaagctaatatctgctatgaaattattgcatctttagaaatggtttgctggttgaaattcaactagctagggagatatttgttgaaattcatctt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44223074 ttttagaagctaatatctgctatgaaattattgcatctttagaaatggtttgctggttgaaattcaactagctagggagatatttgttgaaattcatctt 44223173  T
Q  408 tagggannnnnnnnnnnnnnnnngtatgtataaaagcagcatgtaacaacttgacaaaccaatttcatcatgtctaccaataccattttactttacgtct 507  Q
    ||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44223174 taggga--tttttttttttttttgtatgtataaaagcagcatgtaacaacttgacaaaccaatttcatcatgtctatcaataccattttactttacgtct 44223271  T
Q  508 catcttctccctgagacagtgagactcatcgcacnnnnnnngtaaaatgaattaagaagacacgtaaccacaagtatctagctacatcttcttcttattc 607  Q
    ||||||||||||||||||||||||||||||||||       |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44223272 catcttctccctgagacagtgagactcatcgcacaaaaaaagtaaaatgaactaaaaagacacgtaaccacaagtatctagctacatcttcttcttattc 44223371  T
Q  608 ttctttatttttatttacnnnnnnnnnnacgatgggctacatcataacaaaacgatcttatttaatatg 676  Q
    ||||||||||||||||||          ||||| |||||||||||||||||||||||||||||||||||    
T  44223372 ttctttatttttatttac-tttttttttacgat-ggctacatcataacaaaacgatcttatttaatatg 44223438  T

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