View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4805-Insertion-7 (Length: 663)
Name: NF4805-Insertion-7
Description: NF4805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4805-Insertion-7 |
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| [»] chr1 (5 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 595; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 8 - 663
Target Start/End: Complemental strand, 36396381 - 36395726
Alignment:
| Q |
8 |
gactggtggtggctgaattgttgacgggcttgatgggaagctcaataacagctttgcttgtagctgatgtagtgtccacagtcataggaagttgatgacc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36396381 |
gactggtggtggctgaattgttgacgggcttgatgggaagctcaataacagctttgcttgtagctgatgcagtgtccacagtcataggaagttgatgacc |
36396282 |
T |
|
| Q |
108 |
agtttcactggcagctgatatagtgccaacagcctgactaggtaatggtgcatcatcggacacatccatgttagaagagcaaggtaggagaagggttctg |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36396281 |
agtttcactggcagctgatatagtgccaacagcctgactaggtaatggtgcatcatcggacgcatccatgttagaagagcaaggtaggagaagggttctg |
36396182 |
T |
|
| Q |
208 |
tttgagcaaccagaagccgatgcctcattgggaccatttcctgtattaccctctatcaaacaatccttcacacatagcaatacaagagcacagaccatta |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36396181 |
tttgagcaaccagaagccgatgcctcattgggaccatttcctggattaccctctatcaaacaatccttcacacatagcaatacaagagcacagaccatta |
36396082 |
T |
|
| Q |
308 |
ttagtcaaaattctaaacgatatacagacagaacaggacattattaatcaaaattctatacgatacacagacaaaacaggacattattaatc-aaattct |
406 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
36396081 |
ttagtcaaaattctatacgatatacagacagaacaggacattattaatcaaaattctatacgatacacagacaaaacaggacattattaatcaaaattat |
36395982 |
T |
|
| Q |
407 |
ttacgatatacaggccattagattaaggagctagtaggggattttcaagaggaacactttcaaaaagataaagaaattttattggagtacgttgagcaaa |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36395981 |
ttacgatatacaggccattagattaaggagctagtaggggattttcaaaaggaacactttcaaaaagataaagaaattttattggagtactttgagcaaa |
36395882 |
T |
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| Q |
507 |
tttcatttagcctctcaagcattgttaaaatagtatatgaatgtctcaaaattataacatgttgattaaccatactaggaggttggagctaataatcttt |
606 |
Q |
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| T |
36395881 |
tttcatttagcctctcaagcattgttaaaatagtatatgaatgtctcaaaattataacatgttgattaaccatactaggaggttggagctaataatcttt |
36395782 |
T |
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| Q |
607 |
cttnnnnnnntgaatgagtataatttgaagttaacattgagattaaaaagaagaaac |
663 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36395781 |
ctt-aaaaaatgaatgagtataatttgaagttaacattgagattaaaaagaagaaac |
36395726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 2944157 - 2944237
Alignment:
| Q |
107 |
cagtttcactggcagctgatatagtgccaacagcctgactaggtaatggtgcatcatcggacacatccatgttagaagagc |
187 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2944157 |
cagtttcactggctgctgatatagtgccaacagcctgactaggtaatggtgcatcatcggacacgtccatgttagaagagc |
2944237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 623 - 663
Target Start/End: Complemental strand, 11060242 - 11060202
Alignment:
| Q |
623 |
agtataatttgaagttaacattgagattaaaaagaagaaac |
663 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11060242 |
agtataatttgaagttaaccttgagattaaaaagaagaaac |
11060202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 623 - 663
Target Start/End: Complemental strand, 44719989 - 44719949
Alignment:
| Q |
623 |
agtataatttgaagttaacattgagattaaaaagaagaaac |
663 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44719989 |
agtataatttgaagttaacatcgagattaaaaagaagaaac |
44719949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 626 - 658
Target Start/End: Complemental strand, 1408271 - 1408239
Alignment:
| Q |
626 |
ataatttgaagttaacattgagattaaaaagaa |
658 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
1408271 |
ataatttgaagttaacattgagaataaaaagaa |
1408239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 247 - 295
Target Start/End: Original strand, 10781701 - 10781749
Alignment:
| Q |
247 |
cctgtattaccctctatcaaacaatccttcacacatagcaatacaagag |
295 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10781701 |
cctggattaccctctatcaaacaatccttcacacataggaatacaagag |
10781749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 623 - 663
Target Start/End: Original strand, 33986917 - 33986957
Alignment:
| Q |
623 |
agtataatttgaagttaacattgagattaaaaagaagaaac |
663 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
33986917 |
agtataatttgaagttaacattgagattaaaaagaagaaac |
33986957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 623 - 663
Target Start/End: Original strand, 23772983 - 23773023
Alignment:
| Q |
623 |
agtataatttgaagttaacattgagattaaaaagaagaaac |
663 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
23772983 |
agtataatttgaagttaacattgagattaaaaagaagaaac |
23773023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 623 - 663
Target Start/End: Original strand, 28864780 - 28864820
Alignment:
| Q |
623 |
agtataatttgaagttaacattgagattaaaaagaagaaac |
663 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||| |
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| T |
28864780 |
agtatgatttgaagttaacattgaaattaaaaagaagaaac |
28864820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 623 - 662
Target Start/End: Original strand, 24753026 - 24753065
Alignment:
| Q |
623 |
agtataatttgaagttaacattgagattaaaaagaagaaa |
662 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
24753026 |
agtataatttgaagttaacattgagattaaaaagaagaaa |
24753065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 623 - 663
Target Start/End: Original strand, 24745549 - 24745589
Alignment:
| Q |
623 |
agtataatttgaagttaacattgagattaaaaagaagaaac |
663 |
Q |
| |
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|||| ||||| || ||||||||||||||||||||||||||| |
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| T |
24745549 |
agtacaatttaaaattaacattgagattaaaaagaagaaac |
24745589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 623 - 663
Target Start/End: Complemental strand, 28525399 - 28525359
Alignment:
| Q |
623 |
agtataatttgaagttaacattgagattaaaaagaagaaac |
663 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
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| T |
28525399 |
agtataatttgaagttaacattaagattaaaaagaagaaac |
28525359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 625 - 663
Target Start/End: Original strand, 9625975 - 9626013
Alignment:
| Q |
625 |
tataatttgaagttaacattgagattaaaaagaagaaac |
663 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |
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|
| T |
9625975 |
tataatttgaagttaacattaagattaaaaagaagaaac |
9626013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 623 - 663
Target Start/End: Complemental strand, 31074632 - 31074592
Alignment:
| Q |
623 |
agtataatttgaagttaacattgagattaaaaagaagaaac |
663 |
Q |
| |
|
||||||||||||||||||| | ||||||| ||||||||||| |
|
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| T |
31074632 |
agtataatttgaagttaacgtcgagattataaagaagaaac |
31074592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 623 - 663
Target Start/End: Original strand, 330515 - 330555
Alignment:
| Q |
623 |
agtataatttgaagttaacattgagattaaaaagaagaaac |
663 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
330515 |
agtataatttgaagttaacattgaaattaaaaagaagaaac |
330555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 623 - 663
Target Start/End: Original strand, 26585816 - 26585856
Alignment:
| Q |
623 |
agtataatttgaagttaacattgagattaaaaagaagaaac |
663 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
26585816 |
agtataatttaaagttgacattgagattaaaaagaagaaac |
26585856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 627 - 662
Target Start/End: Complemental strand, 14886974 - 14886939
Alignment:
| Q |
627 |
taatttgaagttaacattgagattaaaaagaagaaa |
662 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14886974 |
taatttgaagttaacattgagattaaaaaggagaaa |
14886939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 623 - 663
Target Start/End: Complemental strand, 18675701 - 18675661
Alignment:
| Q |
623 |
agtataatttgaagttaacattgagattaaaaagaagaaac |
663 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
18675701 |
agtataacctgaagttaatattgagattaaaaagaagaaac |
18675661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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