View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4805-Insertion-8 (Length: 326)
Name: NF4805-Insertion-8
Description: NF4805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4805-Insertion-8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 326
Target Start/End: Complemental strand, 50505434 - 50505119
Alignment:
| Q |
8 |
atacctatataagatgttcacaattaaatatgagctcgtcctatttggagtgtgaacattttcaacaactttccctttttgctaaagaagttcgacatct |
107 |
Q |
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| T |
50505434 |
atacctatataagatgttcacaattaaatatgagctcgtcctatttggaatgtgaacattttcaacaactttccctttttgctaaagaagttcgacatct |
50505335 |
T |
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| Q |
108 |
gaattagttgatgatgaacggggaaaacctgatttgaatggataacctttgtaccagatctttggtttttatatgcatggttttgactaatttttctcgt |
207 |
Q |
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| T |
50505334 |
gaattagttgatga---acggggaaaacctgatttgaatggttaacctttgtaccagatctttggtttttatatgcatggttttgactaatttttctcgt |
50505238 |
T |
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| Q |
208 |
tctccagcttccacggttggagcatgaattgttacattgagagttgcatgctttatgtattgaatgtgcacgtaccaaaatgactaccagttacgttctc |
307 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
50505237 |
tctccagcttccacggttggagcatgaattgttactttgagagttgcatgctttatgtattgaatgtgcatgtaccaaaatgactaccagttacgttctc |
50505138 |
T |
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| Q |
308 |
agcaagtagtgtcgtatga |
326 |
Q |
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| T |
50505137 |
agcaagtagtgtcgtatga |
50505119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 55280971 - 55281032
Alignment:
| Q |
131 |
aaaacctgatttgaatggataacctttgtaccagatctttggtttttatatgcatggttttg |
192 |
Q |
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| T |
55280971 |
aaaacctgatttgaatggataacctttgtaccagatctttgctttttatatttatggttttg |
55281032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 28733798 - 28733906
Alignment:
| Q |
8 |
atacctatataagatgttcacaattaaatatgagctcgtcctatttggagtgtgaacattttcaacaactttccctttttgctaaagaagttcgacatct |
107 |
Q |
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|||||||||||||||||| || |||| |||||| ||||||| | ||| |||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
28733798 |
atacctatataagatgtttactgttaattatgagttcgtcctgctgggaatgtgaacattttcaacaacttttcctttttgctaaagaagtttgacatct |
28733897 |
T |
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| Q |
108 |
gaattagtt |
116 |
Q |
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| T |
28733898 |
gaattagtt |
28733906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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