View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4805_high_1 (Length: 574)

Name: NF4805_high_1
Description: NF4805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4805_high_1
NF4805_high_1
[»] chr4 (7 HSPs)
chr4 (16-246)||(24298081-24298311)
chr4 (16-246)||(23423433-23423663)
chr4 (20-246)||(23875290-23875516)
chr4 (16-246)||(23447933-23448163)
chr4 (40-265)||(23446603-23446828)
chr4 (23-250)||(26827838-26828065)
chr4 (411-499)||(25162540-25162628)
[»] chr8 (2 HSPs)
chr8 (26-250)||(35961620-35961844)
chr8 (461-543)||(30910748-30910830)
[»] chr1 (3 HSPs)
chr1 (89-239)||(12165045-12165197)
chr1 (406-511)||(973072-973177)
chr1 (39-172)||(30436995-30437128)
[»] chr2 (6 HSPs)
chr2 (16-180)||(41257791-41257955)
chr2 (26-180)||(41244349-41244503)
chr2 (409-517)||(2453674-2453782)
chr2 (409-506)||(21847020-21847117)
chr2 (182-246)||(41244594-41244658)
chr2 (182-246)||(41257647-41257711)
[»] chr6 (1 HSPs)
chr6 (409-512)||(10201374-10201477)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 24298311 - 24298081
Alignment:
Q  16 caaaaggattgggttaatgtttggaagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcctcacagccaacaac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  24298311 caaaaggattgggttaatgtttggaagaacaccaccatgagcaatggtaacaccattaagcaatttaccaagctcttcatcattcctaacagccaacaac 24298212  T
Q  116 acatgccttggaattattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacttcagcagcaagatattcaagaactgctgccaggt 215  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24298211 acatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacttcagcagcaagatattcaagaactgctgctaggt 24298112  T
Q  216 atactggagcaccggttccgacacgctgagc 246  Q
    |||| |||||||| |||||||||||||||||    
T  24298111 ataccggagcacctgttccgacacgctgagc 24298081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 23423433 - 23423663
Alignment:
Q  16 caaaaggattgggttaatgtttggaagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcctcacagccaacaac 115  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||    
T  23423433 caaaaggatagggttaatgtttggaagaacaccaccatgagcaatggtaacaccattaagcaatttaccaagatcttcatcattcctaacagccaacaac 23423532  T
Q  116 acatgccttggaattattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacttcagcagcaagatattcaagaactgctgccaggt 215  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||    
T  23423533 acatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacctcagcagcgagatattcaagaactgctgctaggt 23423632  T
Q  216 atactggagcaccggttccgacacgctgagc 246  Q
    ||||||||||||| || || |||||||||||    
T  23423633 atactggagcacctgtgcctacacgctgagc 23423663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 23875516 - 23875290
Alignment:
Q  20 aggattgggttaatgtttggaagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcctcacagccaacaacacat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||    
T  23875516 aggattgggttaatgtttggaagaacaccaccatgagcaatggtaacaccattaagcaatttaccaagttcttcatcattcctaacagccaacaacacat 23875417  T
Q  120 gccttggaattattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacttcagcagcaagatattcaagaactgctgccaggtatac 219  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||    
T  23875416 gccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacctcagcagcgagatattcaagaactgctgctaggtatac 23875317  T
Q  220 tggagcaccggttccgacacgctgagc 246  Q
    ||||||||| || || |||||||||||    
T  23875316 tggagcacctgtgcctacacgctgagc 23875290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 23447933 - 23448163
Alignment:
Q  16 caaaaggattgggttaatgtttggaagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcctcacagccaacaac 115  Q
    ||||||||||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||    
T  23447933 caaaaggattgggttgatgttgggaaaaacaccaccatgagcaatggtaacaccattaagcaatttaccaagttcttcatcattcctaacagccaacaac 23448032  T
Q  116 acatgccttggaattattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacttcagcagcaagatattcaagaactgctgccaggt 215  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||    
T  23448033 acatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacctcagcagcgagatattcaagaactgctgctaggt 23448132  T
Q  216 atactggagcaccggttccgacacgctgagc 246  Q
    ||||||||||||| || || |||||||||||    
T  23448133 atactggagcacctgtgcctacacgctgagc 23448163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 40 - 265
Target Start/End: Original strand, 23446603 - 23446828
Alignment:
Q  40 aagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcctcacagccaacaacacatgccttggaattattctattc 139  Q
    ||||| ||||||||||||||| || |||||   ||| | ||| ||||| |||||||| ||| | ||||| ||||||| |||||||||||| |||||||||    
T  23446603 aagaataccaccatgagcaattgtaacacctacaagtagtttcccaagttcttcatcattcataacagcaaacaacaaatgccttggaataattctattc 23446702  T
Q  140 ttcttgttatcacgtgctgcatttccagccaactcaagaacttcagcagcaagatattcaagaactgctgccaggtatactggagcaccggttccgacac 239  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23446703 ttcttgttatcacgagctgcatttccagccaactcaagaacttcagcagcaagatattcaagaactgctgccaggtatactggagcaccggttccgacac 23446802  T
Q  240 gctgagcatatatacccttcttcgaa 265  Q
    ||||||||||||||||||||||||||    
T  23446803 gctgagcatatatacccttcttcgaa 23446828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 23 - 250
Target Start/End: Complemental strand, 26828065 - 26827838
Alignment:
Q  23 attgggttaatgtttggaagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcctcacagccaacaacacatgcc 122  Q
    |||||||||||||| ||||||||||||||||||||||| || ||||||  ||||| ||| |||||||||||||| ||||| ||||||||||||| |||||    
T  26828065 attgggttaatgttcggaagaacaccaccatgagcaattgtaacaccagcaagcagttttccaagctcttcatcattcctaacagccaacaacaaatgcc 26827966  T
Q  123 ttggaattattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacttcagcagcaagatattcaagaactgctgccaggtatactgg 222  Q
    ||||||| ||||||||||||||||||||||| || || ||||| ||||| |||||||| |||||||| || |||||||||||||| || ||||| || ||    
T  26827965 ttggaatgattctattcttcttgttatcacgagcagcgtttcctgccaattcaagaacctcagcagcgaggtattcaagaactgcagctaggtaaaccgg 26827866  T
Q  223 agcaccggttccgacacgctgagcatat 250  Q
    ||||||||| ||||||||||||||||||    
T  26827865 agcaccggtgccgacacgctgagcatat 26827838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 499
Target Start/End: Original strand, 25162540 - 25162628
Alignment:
Q  411 tttggtttgacattgttatcggttttgtgaattatattttgtatcaggaattgattggttaatagcaaatcaactgtgaatttctcgtt 499  Q
    |||||||||| |||||| | ||||||||  |||||||||||||| |  ||||| ||||||||||| || | || |||||||||||||||    
T  25162540 tttggtttgatattgtttttggttttgtagattatattttgtattaataattgtttggttaatagtaattaaagtgtgaatttctcgtt 25162628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 26 - 250
Target Start/End: Complemental strand, 35961844 - 35961620
Alignment:
Q  26 gggttaatgtttggaagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcctcacagccaacaacacatgccttg 125  Q
    |||||||| || |||||||||||||||||||||||||| ||||||  ||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  35961844 gggttaatattaggaagaacaccaccatgagcaatggtaacaccagcaagcaatttcccaagctcttcatcattcctcacagccaacaacacatgccttg 35961745  T
Q  126 gaattattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacttcagcagcaagatattcaagaactgctgccaggtatactggagc 225  Q
    |||| || |||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||||||||||| || || | ||| || |||||    
T  35961744 gaataatcctattcttcttgttatcacgagcagcattaccagccaattcaagaacttcagcagcaagatattcaagaacagcggctaagtaaacaggagc 35961645  T
Q  226 accggttccgacacgctgagcatat 250  Q
    |||||| |||||||| |||||||||    
T  35961644 accggtgccgacacgttgagcatat 35961620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 461 - 543
Target Start/End: Original strand, 30910748 - 30910830
Alignment:
Q  461 ttgattggttaatagcaaatcaactgtgaatttctcgttctaagttgaattgacattttatcattgcttatcttgttatcatt 543  Q
    |||||||||||||| ||| |||| ||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||    
T  30910748 ttgattggttaataacaattcaagtgtgaatttctcgttctaaattgaattgtcattttatcattgattatcttgttatcatt 30910830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 6e-60; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 89 - 239
Target Start/End: Complemental strand, 12165197 - 12165045
Alignment:
Q  89 tcttcatcgttcctcacagccaacaacacatgccttggaattattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacttcagcag 188  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  12165197 tcttcatcgttcctaacagccaacaacacatgccttggaatgattctattcttcttgttatcacgagctgcatttccagccaactcaagaacctcagcag 12165098  T
Q  189 caagatattca--agaactgctgccaggtatactggagcaccggttccgacac 239  Q
    | |||||||||  ||||||||||| ||||||||||||||||||||||||||||    
T  12165097 cgagatattcaagagaactgctgctaggtatactggagcaccggttccgacac 12165045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 406 - 511
Target Start/End: Complemental strand, 973177 - 973072
Alignment:
Q  406 tttggtttggtttgacattgttatcggttttgtgaattatattttgtatcaggaattgattggttaatagcaaatcaactgtgaatttctcgttctaagt 505  Q
    ||||||||||||||| |||||||| |||||  || |||||||| ||||| || |||| |||| |||||| ||| |||| ||||||||| || ||| ||||    
T  973177 tttggtttggtttgatattgttattggtttcatggattatattgtgtattagtaatttattgattaataacaattcaaatgtgaatttgtcattcaaagt 973078  T
Q  506 tgaatt 511  Q
    ||||||    
T  973077 tgaatt 973072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 172
Target Start/End: Complemental strand, 30437128 - 30436995
Alignment:
Q  39 gaagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcctcacagccaacaacacatgccttggaattattctatt 138  Q
    ||||||||||||||||||||||||| || |||  | |||||||  |||||||||||| | |||| |   |||||| || ||||||||| || || ||| |    
T  30437128 gaagaacaccaccatgagcaatggtaactccagcatgcaatttttcaagctcttcattgatccttatcaccaacagcatatgccttgggataatcctagt 30437029  T
Q  139 cttcttgttatcacgtgctgcatttccagccaac 172  Q
     |||  ||| ||| | |||||||||||| |||||    
T  30437028 tttccggttgtcatgagctgcatttccaaccaac 30436995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 5e-45; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 41257955 - 41257791
Alignment:
Q  16 caaaaggattgggttaatgtttggaagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcctcacagccaacaac 115  Q
    ||||||||||||||| ||||||||||||||||| ||||| ||||| || ||||||   | |||||| ||||| |||||||||||||||||||||||||||    
T  41257955 caaaaggattgggttgatgtttggaagaacacctccatgtgcaattgtaacaccagctaacaattttccaagttcttcatcgttcctcacagccaacaac 41257856  T
Q  116 acatgccttggaattattctattcttcttgttatcacgtgctgcatttccagccaactcaagaac 180  Q
    || ||||| || || || || ||||||||||| ||||||||||||||||||||||||||||||||    
T  41257855 acgtgcctagggatgatcctgttcttcttgttgtcacgtgctgcatttccagccaactcaagaac 41257791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 41244349 - 41244503
Alignment:
Q  26 gggttaatgtttggaagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcctcacagccaacaacacatgccttg 125  Q
    ||||| ||||||||||||||||||||||| ||||| || || |||   |  ||||| || ||||||||||| |||||||| ||||||||||| |||||||    
T  41244349 gggttgatgtttggaagaacaccaccatgtgcaattgtaactccagctaataattttcctagctcttcatcattcctcactgccaacaacacgtgccttg 41244448  T
Q  126 gaattattctattcttcttgttatcacgtgctgcatttccagccaactcaagaac 180  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||    
T  41244449 gaattatcctattcttcttgttatcacgtgccgcatttccagccaattcaagaac 41244503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 409 - 517
Target Start/End: Original strand, 2453674 - 2453782
Alignment:
Q  409 ggtttggtttgacattgttatcggttttgtgaattatattttgtatcaggaattgattggttaatagcaaatcaactgtgaatttctcgttctaagttga 508  Q
    |||||||||||| |||||||| ||||||||| |||||||| ||||| |  | |||||||||||||| ||| |||| ||||||| |||||| | |||||||    
T  2453674 ggtttggtttgatattgttattggttttgtggattatattgtgtattaatagttgattggttaataacaagtcaagtgtgaatctctcgtacaaagttga 2453773  T
Q  509 attgacatt 517  Q
    |||| ||||    
T  2453774 attgtcatt 2453782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 409 - 506
Target Start/End: Complemental strand, 21847117 - 21847020
Alignment:
Q  409 ggtttggtttgacattgttatcggttttgtgaattatattttgtatcaggaattgattggttaatagcaaatcaactgtgaatttctcgttctaagtt 506  Q
    ||||||| ||||||||||| | ||||||||| |||||||| |||||||  |||||||  || || | ||| | || |||||||||||||||| |||||    
T  21847117 ggtttgggttgacattgttgttggttttgtggattatattgtgtatcaataattgataagtcaacatcaatttaagtgtgaatttctcgttcaaagtt 21847020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 41244594 - 41244658
Alignment:
Q  182 tcagcagcaagatattcaagaactgctgccaggtatactggagcaccggttccgacacgctgagc 246  Q
    ||||||||||||||||||||||| || || ||||| || |||||||| || || |||||||||||    
T  41244594 tcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagc 41244658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 41257711 - 41257647
Alignment:
Q  182 tcagcagcaagatattcaagaactgctgccaggtatactggagcaccggttccgacacgctgagc 246  Q
    ||||||||||||||||||||||| || || | ||| || |||||||| || || |||||||||||    
T  41257711 tcagcagcaagatattcaagaacagcagctaagtaaacaggagcaccagtaccaacacgctgagc 41257647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 409 - 512
Target Start/End: Complemental strand, 10201477 - 10201374
Alignment:
Q  409 ggtttggtttgacattgttatcggttttgtgaattatattttgtatcaggaattgattggttaatagcaaatcaactgtgaatttctcgttctaagttga 508  Q
    |||||||||||| || ||||| ||||||||| |||||||| ||||| |  |||||||| ||||||| ||| |||| ||||||||| ||||||||| ||||    
T  10201477 ggtttggtttgatatagttattggttttgtggattatattatgtattaataattgattagttaataacaattcaagtgtgaatttttcgttctaatttga 10201378  T
Q  509 attg 512  Q
    ||||    
T  10201377 attg 10201374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University