View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4805_high_2 (Length: 501)
Name: NF4805_high_2
Description: NF4805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4805_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 38 - 486
Target Start/End: Original strand, 36181322 - 36181768
Alignment:
| Q |
38 |
gtatgattaaaactttaatgcatacttgaagataccagggatgtggatattcatgaagtaatcttcccagtcaataattttgggatcaaagtaaaacaaa |
137 |
Q |
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| T |
36181322 |
gtatgattaaaactttaatgcatacttgaagataccagggatgtggatattcatgaagtaatcttcccagtcaataattttgggatcaaagtaaaacaaa |
36181421 |
T |
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| Q |
138 |
ttcacttctacaccttcttgttttacggctaatagcaacttttgtgtattcatatcatcaaatctgtgtgcaaaaacaaacactcttttaagttaattaa |
237 |
Q |
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| T |
36181422 |
ttcacttctacaccttcttgttttacggctaatagcaacttttgtgtattcatatcatcaaatctgtgtgcaaaaacaaacactctt--aagttaattaa |
36181519 |
T |
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| Q |
238 |
tgaaccaaatgctttagtgtgatattttaatttaggtgctaattatcaattaacttacatgccattgaagaacaagtaaggcaggtaaagatcaatcaac |
337 |
Q |
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| T |
36181520 |
tgaaccaaatgctttagtatgatattttaattaaggtgctaattatcaattaacttacatgccattgaagaacaagtaaggcaggtaaagatcaatcaac |
36181619 |
T |
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| Q |
338 |
cgcataactgtactgattttccggtttaggtcagtatatattccccgaaaatattgacacaaaattgaatttgcgacctctagtccctgttaaagcaaac |
437 |
Q |
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| T |
36181620 |
cgcataactgtactgattttccggtttaggtcagtatatattccctgaaaatattgacacaaaattgaatttgcgacctctagtccctgttaaagcaaac |
36181719 |
T |
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| Q |
438 |
tttgttagcacattgttgcgattcgggaaaattacactcacctctctgc |
486 |
Q |
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| T |
36181720 |
tttgttagcacattgttgcgattcgggaaaattacactcacctctctgc |
36181768 |
T |
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