View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4805_high_8 (Length: 250)
Name: NF4805_high_8
Description: NF4805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4805_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 161509 - 161752
Alignment:
| Q |
1 |
tgggattgcttttcttgtttacactgcattcaactttgtacgtcttgccaagattctcttctagtagagaaacttgaaaatgtataattcgtggtttgga |
100 |
Q |
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| T |
161509 |
tgggattgcttttcttgtttacactgcattcaactttgtacgtcttgccaagattctcttctagtagagaaacttgaaaatgtataattcgtggtttgga |
161608 |
T |
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| Q |
101 |
ttattatcataactagattga--tgagtgttatgtgtatttatttattttggtctaagtatagttgttaagattcacccttaaagtgaataagtgggtaa |
198 |
Q |
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| T |
161609 |
ttattatcataactagattgatgtgtgtgttatgtgtatttatttattttggtctaagtatagttgttaagattcacccttaaagtgaataagtgggtaa |
161708 |
T |
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| Q |
199 |
tttagagttcgaaatcccactggtatatactatagtgtctctgc |
242 |
Q |
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| T |
161709 |
tttagagttcgaaatcccactggtatatactatagtgtctctgc |
161752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 153032 - 153159
Alignment:
| Q |
1 |
tgggattgcttttcttgtttacactgcattcaactttgtacgtcttgccaagattctcttctagtagagaaacttgaaaatgtataattcgtggtttgga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| ||||||| | |
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| T |
153032 |
tgggattgcttttcttgtttacactgcattcaactttgtacgtcttgccaagattcttttctactagacaaacttgaaaatgtataattcatggtttgaa |
153131 |
T |
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| Q |
101 |
ttattatcataactagattgatgagtgt |
128 |
Q |
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| T |
153132 |
ttattatcataactagatttatgtgtgt |
153159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 33687504 - 33687468
Alignment:
| Q |
175 |
cccttaaagtgaataagtgggtaatttagagttcgaa |
211 |
Q |
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| T |
33687504 |
cccttaaggtgaataagtggggaatttagagttcgaa |
33687468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 33704510 - 33704474
Alignment:
| Q |
175 |
cccttaaagtgaataagtgggtaatttagagttcgaa |
211 |
Q |
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| T |
33704510 |
cccttaaggtgaataagtggggaatttagagttcgaa |
33704474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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