View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4805_low_11 (Length: 241)
Name: NF4805_low_11
Description: NF4805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4805_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 33077431 - 33077650
Alignment:
| Q |
5 |
tacccgactgtttttgcggctctgctgttccggtattttgccaagtttcacacctttgattaaccagtttcaagttttaaccctaatcactcgtatttat |
104 |
Q |
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| T |
33077431 |
tacccgactgtttttgcggctctgctgttccggtattttgctaagtttcacacctttgattaaccagtttcaagttttaaccctaatcactcgtatttat |
33077530 |
T |
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| Q |
105 |
tgaatccctgtaggattatactataattacatacaacagtatacaagtttctatatatgcat---ataataactcgggcattagtgatatttacactata |
201 |
Q |
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| T |
33077531 |
tgaatccctgtagaattatactataattacatacaacagtatacaagtttctatatatgcatataataataactcaggcattagtgatatttacactata |
33077630 |
T |
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| Q |
202 |
cgcataatcaacaaacatag |
221 |
Q |
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| T |
33077631 |
cgcataatcaacaaacatag |
33077650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 46 - 209
Target Start/End: Original strand, 41500949 - 41501108
Alignment:
| Q |
46 |
caagtttcacacctttgattaaccagtttcaagttttaaccctaatcactcgtatttattgaatccctgtaggattatactataattacatacaacagta |
145 |
Q |
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| T |
41500949 |
caagtttcacacctttaattaaccagtttcaagttttaaccctaatcactcatatttattgaatccttgtaggattatactataa----ctacaacagta |
41501044 |
T |
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| Q |
146 |
tacaagtttctatatatgcatataataactcgggcattagtgatatttacactatacgcataat |
209 |
Q |
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| T |
41501045 |
tacaagtttctgtatatgcatataatacctcatgcattagtgatatttacactatacacataat |
41501108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 41505703 - 41505816
Alignment:
| Q |
46 |
caagtttcacacctttgattaaccagtttcaagttttaaccctaatcactcgtatttattgaatccctgtaggattatactataattacatacaacagta |
145 |
Q |
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||||||||||||||| || || || |||||||||| ||||||||||||| ||| |||||| |||||||||||||||| || |||||| |||||| |
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| T |
41505703 |
caagtttcacaccttaaataaagcattttcaagtttcaaccctaatcacttttatctattgagtccctgtaggattatagtacaattacc----acagta |
41505798 |
T |
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| Q |
146 |
tacaagtttctatatatg |
163 |
Q |
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|||||| ||||| ||||| |
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| T |
41505799 |
tacaagcttctaaatatg |
41505816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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