View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4805_low_12 (Length: 238)
Name: NF4805_low_12
Description: NF4805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4805_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 161266 - 161045
Alignment:
| Q |
1 |
tataagagaatcaacaagtgaaacataattgcatatataaggttgttcttgatattgacattgttctagggcaatgaggttccttaaaacacattctgtt |
100 |
Q |
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| T |
161266 |
tataagagaatcaacaagtgaaacataattgcatatataaggttgttcttgataatgacattgttctagggcaatgaggttccttaaaacacattctgtt |
161167 |
T |
|
| Q |
101 |
gtgtgatcaaccttcaattgcggaatcctaagacgcgctttgaaatgattcaaacatgaaaatgaaggtaaacaacctaagcagagaaaattacttagaa |
200 |
Q |
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| T |
161166 |
gtgtgatcaaccttcaattgcggaatcctaagacgcgctttgaaatgattcaaacataaaaatgaaggtaaacaacctaagcagagaaaattacttagaa |
161067 |
T |
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| Q |
201 |
atggtttcttctcaaatgttat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
161066 |
atggtttcttctcaaatgttat |
161045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 152789 - 152568
Alignment:
| Q |
1 |
tataagagaatcaacaagtgaaacataattgcatatataaggttgttcttgatattgacattgttctagggcaatgaggttccttaaaacacattctgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
152789 |
tataagagaatcaacaagtgaaacataattgcatatataaggttgttcttgatactgacattgttctagggcaatgaggttccttagaacgcattctgtt |
152690 |
T |
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| Q |
101 |
gtgtgatcaaccttcaattgcggaatcctaagacgcgctttgaaatgattcaaacatgaaaatgaaggtaaacaacctaagcagagaaaattacttagaa |
200 |
Q |
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| T |
152689 |
gtgtgatcaaccttcaattgcggaatcattagacgtgctttgaaattgttcaaacatgaaaaagaaggtaaacaacctaagcagagaaaataacttagaa |
152590 |
T |
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| Q |
201 |
atggtttcttctcaaatgttat |
222 |
Q |
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| T |
152589 |
actgtttcttctcaaattttat |
152568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 106515 - 106597
Alignment:
| Q |
20 |
gaaacataattgcatatataaggttgttcttgatattgacattgttctagggcaatgaggttccttaaaacacattctgttgt |
102 |
Q |
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||||||||||||||||| ||||||| | | ||| ||||||||||| | |||||||||||||| | ||||||||| ||||| |
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| T |
106515 |
gaaacataattgcatatgaaaggttggtttgaataatgacattgttccaaagcaatgaggttcctaagaacacattcagttgt |
106597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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