View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4805_low_13 (Length: 228)
Name: NF4805_low_13
Description: NF4805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4805_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 42171374 - 42171569
Alignment:
| Q |
15 |
atcaaccactcaattatgcgcgtatgtacctcgcagatctagttccggcaaccgctcagcgaatcatctacttcgattccgatctcatcgtcgttgatga |
114 |
Q |
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| T |
42171374 |
atcaaccactcaattacgcgcgtatgtacctcgccgatctagttccggcaaccgctcagcgaatcatctacttcgattccgatctcatcgtcgttgatga |
42171473 |
T |
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| Q |
115 |
cgtggcaaaactatggagcatcgatttaggaaatcatgtcctcggtgcgccggagtattgtcacgcgaacttcactacctacttcacgcatcggtt |
210 |
Q |
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| T |
42171474 |
cgtggcaaaactatggagcatcgatttaggaaatcatgtcctcggtgcgccggagtattgtcacgcgaacttcactacctacttcacgcatcggtt |
42171569 |
T |
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Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 48481581 - 48481678
Alignment:
| Q |
18 |
aaccactcaattatgcgcgtatgtacctcgcagatctagttccggcaaccgctcagcgaatcatctacttcgattccgatctcatcgtcgttgatgac |
115 |
Q |
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|||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
48481581 |
aaccactcaactacgcgcgtatgtacctcgccgatctagttccggccaccgctcagcgaatcatatacttcgattccgatctcatcatcgttgatgac |
48481678 |
T |
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