View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4805_low_2 (Length: 503)
Name: NF4805_low_2
Description: NF4805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4805_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 293 - 484
Target Start/End: Complemental strand, 39445292 - 39445101
Alignment:
| Q |
293 |
aaaaatgttgatgatataattttcttgaaatttttctttagcagatgtatttggtttcatcactctttgcggcaacaacaatggatgtaatgccacagct |
392 |
Q |
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| T |
39445292 |
aaaaatgttgataatataattttcttgaaatttttctttaggtgctgtatttggtttcatcactctttgcggcaacaacaatggatgtaatgccactgct |
39445193 |
T |
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| Q |
393 |
aacaaaacttcaaaaccaaaaaagtattgttataagaagccctaatacgccaaaatcaatttccctattcatcttcaaaacatgattaaaag |
484 |
Q |
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| T |
39445192 |
aacaaaatttcaaaataaaaaaagtattgttataagaagccctaatccgccaaaatcaatttccctattcatcttcaaaacatgattaaaag |
39445101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 21 - 189
Target Start/End: Complemental strand, 39446352 - 39446184
Alignment:
| Q |
21 |
ataaccaaacatttgagctcaattgttgatgaactccaccaataacgaattttttaggagaacttgggttcaattcttaagtgaaatattttttggtcaa |
120 |
Q |
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| T |
39446352 |
ataaccaaacatttgacctcaattgttgatgaactccaccgataacaaattttttaggagaatttggattcgattctaaagtgaaacatttgttggccaa |
39446253 |
T |
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| Q |
121 |
attttacttatctcccaaccgaattcaggattacgagagcccttctcgttgaaactagagggtaaatac |
189 |
Q |
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| T |
39446252 |
attttatttctctcccaaccgaattcaggattacgagagcccttctcgttgaaaccagagggtaaatac |
39446184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 215 - 298
Target Start/End: Complemental strand, 39446166 - 39446083
Alignment:
| Q |
215 |
ctctccttagcaaatgtttgttagatttatttccaatgtcaagttctatttaatttaattcaatcctccagtatatagaaaaat |
298 |
Q |
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| T |
39446166 |
ctctccttaacaaatgtttgttagatttatttccaatgtcaagttctatttaatttaattcaatcctccaatatatagaaaaat |
39446083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 39467689 - 39467630
Alignment:
| Q |
21 |
ataaccaaacatttgagctcaattgttgatgaactccaccaataacgaattttttaggag |
80 |
Q |
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| T |
39467689 |
ataaccaaacatttgagattaattgttgatgaactccaccaaggacgatttttttaggag |
39467630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 216 - 375
Target Start/End: Complemental strand, 35314931 - 35314772
Alignment:
| Q |
216 |
tctccttagcaaatgtttgttagatttatttccaatgtcaagttctatttaatttaat-tcaatcctccagtatatagaaaaatgttgatgatataattt |
314 |
Q |
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| T |
35314931 |
tctccttaataaatgtttgttagatttatcgccaatgtaaaattctatttaatttaatatcaattctctaatattta-aaaaatgttgataatataattt |
35314833 |
T |
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| Q |
315 |
tcttgaaatttttctttagcagatgtatttggtttcatcactctttgcggcaacaacaatg |
375 |
Q |
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| T |
35314832 |
tctttgaatttttctttagcagctgtatttagtttcatcactctatgtggcaacaataatg |
35314772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 225 - 473
Target Start/End: Complemental strand, 35315858 - 35315621
Alignment:
| Q |
225 |
caaatgtttgttagatttatttccaatgtcaagttctatttaatttaat-tcaatcctccagtatatagaaaaatgttgatgatataattttcttgaaat |
323 |
Q |
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| T |
35315858 |
caaatgtttgtaagagttattgttagtgtcaaattctatttaatttaatatcaatcctccaatatttaaaaaaatgttgataatat------------at |
35315771 |
T |
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| Q |
324 |
ttttctttagcagatgtatttggtttcatcactctttgcggcaacaacaatggatgtaatgccacagctaacaaaacttcaaaaccaaaaaagtattgtt |
423 |
Q |
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| T |
35315770 |
ttttctttagcaactatatttggtttcaccgctcttagtagcaacaacaatgcatgcaatatcggtgctaacaaaatttcaaagtcgaacaagcattgtt |
35315671 |
T |
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| Q |
424 |
ataagaagccctaatacgccaaaatcaatttccctattcatcttcaaaac |
473 |
Q |
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| T |
35315670 |
ataagaaaccctaaccctccaaaatgaatctccctatttatcttaaaaac |
35315621 |
T |
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