View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4805_low_4 (Length: 463)

Name: NF4805_low_4
Description: NF4805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4805_low_4
NF4805_low_4
[»] chr2 (1 HSPs)
chr2 (121-419)||(12891643-12891942)


Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 121 - 419
Target Start/End: Original strand, 12891643 - 12891942
Alignment:
Q  121 gcccctttagccaaaattcctatagttcgaaaatgaaatgtacatgttcattatataattgagtaattattggggtcacttttgtttcaactctaatcgc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12891643 gcccctttagccaaaattcctatagttcgaaaatgaaatgtacatgttcattatataattgagtaattattggggtcacttttgtttcaactctaatcgc 12891742  T
Q  221 aaatctcatttcagctgtgcctttagaggaaactgagtacaaggataat-aattaattaattaggcgaactggtaaagcgacacatcaaagcctaaaatc 319  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12891743 aaatctcatttcagctgtgcctttagaggaaactaagtacaaggataattaattaattaattaggctaactggtaaagcgacacatcaaagcctaaaatc 12891842  T
Q  320 gttcacaactatctttcaacatgcacaatatatatccagcatgaaaaatttgatttaggaaatgccaccagacacattattggcattgtgaagaacataa 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12891843 gttcacaactatctttcaacatgcacaatatatatccagcatgaaaaatttgatttaggaaatgccaccagacacattattggcattgtgaagaacataa 12891942  T

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