View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4805_low_5 (Length: 398)
Name: NF4805_low_5
Description: NF4805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4805_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 10 - 395
Target Start/End: Complemental strand, 54277199 - 54276826
Alignment:
| Q |
10 |
atgaataagggaacactgagaaattaatctgtttatttgtgtaataagcactataaaactcgattataatcaacatgtgtagtaaataacacaaaatcat |
109 |
Q |
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| T |
54277199 |
atgaataagggaacactaagaaattaatctgtttatttgtgtaataagcactataaaactcgattataatcaacatgtgtagtaaataacacaaaatcat |
54277100 |
T |
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| Q |
110 |
aatatagtaaatcgcattaacaaacaagtcactaataatgataaagctagagacaacttacagcttctgcaacagggatccaatgaaaagcacgggaaaa |
209 |
Q |
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| T |
54277099 |
aatatagtaaatcgcattaacaaacaagtcactaataatgataaagctagagacaacttacagcttctgcaacagggatccaatgaaaagcacgggaaaa |
54277000 |
T |
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| Q |
210 |
atcatcattgtttgaaggaacgctgtcgtggttccaatacgtgatatcattaaacgtcgcactagtatcccacgaattagagctttcatcggatattttg |
309 |
Q |
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| T |
54276999 |
atcatcattgtttgaaggaacgctgtcgtggttccaatacgtgatatcattaaaggtcacactagtctcccacgaattagagctttca------------ |
54276912 |
T |
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| Q |
310 |
gccgaatttttctttcccaaaacaaaacctacagagcatagcaatcacgagtcatcatcacaatgcgaaagaaagagataagaaga |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
54276911 |
accgaatttttctttcccaaaacaaaacctacagagcatagcaatcatgagtcatcatcacaatgagaaagaaagagataagaaga |
54276826 |
T |
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