View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4805_low_6 (Length: 314)
Name: NF4805_low_6
Description: NF4805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4805_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 50505429 - 50505649
Alignment:
| Q |
20 |
aggtataggcttgatcttgaagtgaagtgaaataagattgagaacaaagcacctcaaatcctgcaaaaatatttagtataactaataggaataagcaaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50505429 |
aggtataggcttgatcttgaagtgaagtgaaataagattgagaacaaagcacctcaaatcctgcaaaaatatttagtataactaataggaataagcaaag |
50505528 |
T |
|
| Q |
120 |
gcattatctgataagaaaaatacaagctaaacaaaatactaacatatcatggcttcatggggaatatagaaatcattatctaaaacatgatgaaaccatt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50505529 |
gcattatctgataagaaaaatacaagctaaacaaaatactaacatatcatggcttcatggggaatatagaaatcattatctaaaacatgatgaaaccatt |
50505628 |
T |
|
| Q |
220 |
gcataacagcggacttttaaa |
240 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
50505629 |
gcataacagcggacttttaaa |
50505649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 236 - 300
Target Start/End: Original strand, 50505682 - 50505746
Alignment:
| Q |
236 |
ttaaaaccattgcataaactatatcggtgatttttaggttcgtgtatgatagtgattgatctgtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
50505682 |
ttaaaaccattgcataaactatatcggtgatttttaggttcgtgtatgatagtgattgatgtgtg |
50505746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 55280860 - 55280797
Alignment:
| Q |
23 |
tataggcttgatcttgaagtgaagtgaaataagattgagaacaaagcacctcaaatcctgcaaa |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||| |
|
|
| T |
55280860 |
tataggcttgatcttgaagtgaagtgaaataagagagaagacaaagcacttcaaatcctgcaaa |
55280797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 28733803 - 28733612
Alignment:
| Q |
20 |
aggtataggcttgatcttgaagtgaagtgaaataagattgagaacaaagcacctcaaatcctgcaaaaatatttagtataactaataggaataagcaaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| ||||||| |||| ||||| |
|
|
| T |
28733803 |
aggtataggcttgatcttgaagtgaagtgaaataagattgagaacaaagcacttcaaatcctgcaaaaatgttta---taattaataggcataaacaaag |
28733707 |
T |
|
| Q |
120 |
gcattatctgataagaaaaatacaagctaaacaaaatactaacatatcatggcttcatggggaatatagaaatcattatctaaaacatgatgaaa |
214 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
28733706 |
acattatctgataagaaaaatataagcaaaacaaaatactaacatatcatggcctcatggggaatatataaatcattatctaaaatatgatgaaa |
28733612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 28733556 - 28733499
Alignment:
| Q |
238 |
aaaaccattgcataaactatatcggtgatttttaggttcgtgtatgatagtgattgat |
295 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28733556 |
aaaaccattgcataaactatattggtgatttttaggttcgtgcatgatagtgattgat |
28733499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University