View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4805_low_7 (Length: 262)
Name: NF4805_low_7
Description: NF4805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4805_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 28545685 - 28545941
Alignment:
| Q |
1 |
tatataagtatatataatgttatcatgaaaggagtaccccttgtactcctataaaaacatcaatgatttgaatgaatatactagctaattcattgtttta |
100 |
Q |
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| T |
28545685 |
tatataagtatatataatgttatcatgaagggagtaccccttgtactcctataaaa-catcaatgatttgaatgaatatactagctaattcattgtttta |
28545783 |
T |
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| Q |
101 |
tatgtgtgcaatattccattttcattcaaactctatcaagtatatcttaaattaattaatt-------------aatggagtgatatgataatgtgggct |
187 |
Q |
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| T |
28545784 |
tatgtgtgcaatattccattttcattcaaactctatcaagtatatctaaaattaattaatttaattaattaatgaatggagtgatatgataatgtgggct |
28545883 |
T |
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| Q |
188 |
tgatatgattattgaaaggagggacgataagagtagaaaagataagaatctcaaagat |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28545884 |
tgatatgattattgaaaggagggacgataagagtagaaaagataagaatctaaaagat |
28545941 |
T |
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