View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806-Insertion-1 (Length: 875)
Name: NF4806-Insertion-1
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 610; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 174 - 865
Target Start/End: Complemental strand, 12640111 - 12639421
Alignment:
| Q |
174 |
tgttaaaaataatatcattgttttttaattaattcaccaaattttctaaatcaaagtcctttttctgtcaaacttttaatacatttttatcataaaaaac |
273 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12640111 |
tgttaaaaataatatcattgttttttaattaattgaccaaattttctaaatcaaagtcctttttctgtcaaacttttaatacatttttatcataaaaaac |
12640012 |
T |
|
| Q |
274 |
gaaacagagtaagaaattaaaataatgcaactgaaatcagcttaaacacactacactagtactataaattttcttttttagggtaaccatattattaatg |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12640011 |
gaaacagagtaagaaattaaaataatgcaactgaaatcagcttaaacacactacactagtactataaattttcttttttagggtaaccatattattaatg |
12639912 |
T |
|
| Q |
374 |
taaaatgtctattacctttgttaata-aagtaaaaactaatctttgttagtagattctcttctttcaatcatttttcttcatgtaataaaatctaacttg |
472 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12639911 |
taaaatgtctattacctttgttaatactagtaaaaactaatctttgttagtagattctcttctttcaatcatttttcttcatgtaataaaatctaacttg |
12639812 |
T |
|
| Q |
473 |
agatcttacttaaagatctgtatctagtagatagaaaatatgtaaaataaactnnnnnnnncagcataattatacctgcattggtgttaaacgtgcatta |
572 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12639811 |
agatcttacttaaagatctgtatctagtagatagaaaatatgtaaaataaactaaaaaaaacagcataattatacctgcattggtgttaaacgtgcatta |
12639712 |
T |
|
| Q |
573 |
aagaagtcctgagccatacgaaaactttgattcaactcaccacacatgtttgtttgactaagacaacttctaatagcatcccacttaaaagaacttctaa |
672 |
Q |
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| T |
12639711 |
aagaagtcctgagccatacgaaaactttgattcaactcaccacacatgtttgtttgactaagacaacttctaatagcatcccacttaaaagaacttctaa |
12639612 |
T |
|
| Q |
673 |
ctcttcttttcaaaaacccagaaaaatcatccaaacggtattccaaataagccctattaggttcaatcataccatgaccacgaagagtaaccatgtaaac |
772 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12639611 |
ctcttcttttcaaaaacccagaaaaatcatccaaacggtattccaaataagccctattaggttcaatcataccatgaccacgaagagtaaccatgtaaac |
12639512 |
T |
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| Q |
773 |
aaaaataacc-aacgaactagcaagataataaagcacaagcatagcaactaggtaaaaatattaggagacatggagattctctaaaaggaacca |
865 |
Q |
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|||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| ||||||||| ||||||||||| |
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| T |
12639511 |
aaaaataaccaaacaaactagcaagataat-aagcacaagcatagcaactaggt-agaatattaggagacat-gagattctccaaaaggaacca |
12639421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 12640793 - 12640675
Alignment:
| Q |
8 |
gtatgcacattgtgttggtggtttgcagcacccagactgaaaataattaaagaaaaatttattggcaaaatatatgttagtgaagaagaaagtgatagaa |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
12640793 |
gtatgcacattgtgttggtggtttgcagcacccagactgaaaataattaaagaaaaatttattggcaaaatatatgtaagt---gaagaaagtgatagaa |
12640697 |
T |
|
| Q |
108 |
tttaattaagtgtgtttcataa |
129 |
Q |
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|||||||||||||||||||||| |
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| T |
12640696 |
tttaattaagtgtgtttcataa |
12640675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 12640190 - 12640145
Alignment:
| Q |
132 |
gaaaaaacatagatacatgggtctaattgagaggaaataaaatgtt |
177 |
Q |
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| T |
12640190 |
gaaaaaacatagatacatgggtctaattgagaggaaataaaatgtt |
12640145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 567 - 640
Target Start/End: Complemental strand, 27778548 - 27778475
Alignment:
| Q |
567 |
gcattaaagaagtcctgagccatacgaaaactttgattcaactcaccacacatgtttgtttgactaagacaact |
640 |
Q |
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||||||||||| || ||||| || | | ||||||||||||||||| ||||||| |||| | |||||||||||| |
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| T |
27778548 |
gcattaaagaaatcttgagcaattctataactttgattcaactcagcacacatatttgatgaactaagacaact |
27778475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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