View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4806-Insertion-10 (Length: 335)
Name: NF4806-Insertion-10
Description: NF4806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4806-Insertion-10 |
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| [»] chr3 (9 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 7 - 335
Target Start/End: Complemental strand, 33618636 - 33618308
Alignment:
| Q |
7 |
agttcgcttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagaca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33618636 |
agttcgcttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagaca |
33618537 |
T |
|
| Q |
107 |
aaaggctaacagatccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgtt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33618536 |
aaaggctaacagatccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatatt |
33618437 |
T |
|
| Q |
207 |
gatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcact |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33618436 |
gatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcact |
33618337 |
T |
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| Q |
307 |
gatttcgcaatttctgtccacttgataag |
335 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
33618336 |
gatttcgcaatttctgtccacttgataag |
33618308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 9 - 299
Target Start/End: Complemental strand, 33609459 - 33609169
Alignment:
| Q |
9 |
ttcgcttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagacaaa |
108 |
Q |
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|||||||||||||||||||| ||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||| |||||||||| |||||||| | |
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| T |
33609459 |
ttcgcttaccaagcagacaaacatcataatacccccagttatgaacaggaatcttcgaccaaatcgatcaacaataccggcagagataacgttagacaca |
33609360 |
T |
|
| Q |
109 |
aggctaacagatccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttga |
208 |
Q |
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|||||||| |||||||||| ||||||||||| |||||| ||||| |||| || |||||||| || |||||||| |||||||| || || || ||||||| |
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| T |
33609359 |
aggctaacggatccaagtacaatggcggaaattaaagcgccgtcacgtcccaagcccacagaatggaagaggttaggtgaatagaaagcgacgatgttga |
33609260 |
T |
|
| Q |
209 |
tccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttg |
299 |
Q |
| |
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|||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33609259 |
tcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcgatactccctttttaatatggttttaaagggctcttg |
33609169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 7 - 319
Target Start/End: Complemental strand, 33627851 - 33627539
Alignment:
| Q |
7 |
agttcgcttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagaca |
106 |
Q |
| |
|
||||| |||||||||||||||| ||| ||||| ||||||| |||||||||||||||||||||| |||||||| || | || ||||| ||| |||| |
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| T |
33627851 |
agttcacttaccaagcagacaaacatgataatacccccagtaatgaacaagaatcttcgaccaaatcgatcaataacagtagaagagacgaggatagatg |
33627752 |
T |
|
| Q |
107 |
aaaggctaacagatccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgtt |
206 |
Q |
| |
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|||| ||||| ||||||||||| || |||||||||| | | |||||| || |||| ||| ||||||||| |||||||| || || | |||||| |
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| T |
33627751 |
caaggttaacaacgccaagtataatcgcagaaagtaaagaagcattgtgtcccaaccccaaagatctaaagaggttaggtgaatagaaagcaataatgtt |
33627652 |
T |
|
| Q |
207 |
gatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcact |
306 |
Q |
| |
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||||||||||| ||||| |||||||||||||| | ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| | |
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| T |
33627651 |
gatccctgtaacttgttgaaaaaacgggattgctatcgccattaccaagtgaggtcgatactcccttttgaatatggttttaaagggctcttgttgcagt |
33627552 |
T |
|
| Q |
307 |
gatttcgcaattt |
319 |
Q |
| |
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||||| ||||||| |
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|
| T |
33627551 |
gattttgcaattt |
33627539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 120 - 329
Target Start/End: Complemental strand, 33588632 - 33588423
Alignment:
| Q |
120 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc |
219 |
Q |
| |
|
|||||| |||| ||| ||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||| || || ||||||||||||||||||| | |
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|
| T |
33588632 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac |
33588533 |
T |
|
| Q |
220 |
tgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaattt |
319 |
Q |
| |
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||||| ||||| ||||||| ||||||||| ||||||||||||||||||| || | ||||||||| |||| |||||||||||||||| ||||| ||||| |
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| T |
33588532 |
tgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattgtctctctaatatggtcataaatggctcttgttgcactgctttcgaaattt |
33588433 |
T |
|
| Q |
320 |
ctgtccactt |
329 |
Q |
| |
|
|||||||||| |
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| T |
33588432 |
ctgtccactt |
33588423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 120 - 329
Target Start/End: Complemental strand, 33595804 - 33595595
Alignment:
| Q |
120 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc |
219 |
Q |
| |
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|||||| |||| ||| ||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||| || || ||||||||||||||||||| | |
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|
| T |
33595804 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac |
33595705 |
T |
|
| Q |
220 |
tgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaattt |
319 |
Q |
| |
|
||||| ||||| ||||||| ||||||||| ||||||||||||||||||| || | |||||||| |||| |||||||||||||||| ||||| ||||| |
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|
| T |
33595704 |
tgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattgtctctcaaatatggtcataaatggctcttgttgcactgctttcgaaattt |
33595605 |
T |
|
| Q |
320 |
ctgtccactt |
329 |
Q |
| |
|
|||||||||| |
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|
| T |
33595604 |
ctgtccactt |
33595595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 120 - 329
Target Start/End: Complemental strand, 33602935 - 33602726
Alignment:
| Q |
120 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc |
219 |
Q |
| |
|
|||||| |||| ||| ||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||| || || ||||||||||||||||||| | |
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| T |
33602935 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac |
33602836 |
T |
|
| Q |
220 |
tgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaattt |
319 |
Q |
| |
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||||| ||||| ||||||| ||||||||| ||||||||||||||||||| || | |||||||| |||| |||||||||||||||| ||||| ||||| |
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|
| T |
33602835 |
tgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattgtctctcaaatatggtcataaatggctcttgttgcactgctttcgaaattt |
33602736 |
T |
|
| Q |
320 |
ctgtccactt |
329 |
Q |
| |
|
|||||||||| |
|
|
| T |
33602735 |
ctgtccactt |
33602726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 311
Target Start/End: Complemental strand, 33622658 - 33622521
Alignment:
| Q |
174 |
aaagaggttgggtgaataaaaggctacaatgttgatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctt |
273 |
Q |
| |
|
||||||||| |||||||| || || ||||||||| ||||||||| |||| |||| ||| |||||| || ||||| | | |||||| |||| || ||| |
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|
| T |
33622658 |
aaagaggttaggtgaatagaaagcaacaatgttgttccctgtaacatgttcgaaacacgagattgctaaggccattaaaatctgaggttgatactctctt |
33622559 |
T |
|
| Q |
274 |
tttaatatggttttaaagggctcttgttgcactgattt |
311 |
Q |
| |
|
|||| ||||||||||||||| |||| || |||||||| |
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|
| T |
33622558 |
tttagtatggttttaaagggatctttttttactgattt |
33622521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 33622824 - 33622758
Alignment:
| Q |
13 |
cttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaa |
79 |
Q |
| |
|
||||| |||||||||| |||||||| ||||| | ||||||||||||||||||||||| || ||||| |
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|
| T |
33622824 |
cttacaaagcagacaaacatcataacacccccggttatgaacaagaatcttcgaccaaatctatcaa |
33622758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 268
Target Start/End: Complemental strand, 33563045 - 33562979
Alignment:
| Q |
202 |
atgttgatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatatt |
268 |
Q |
| |
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||||||||||| || || ||||| |||| ||| || |||| ||| |||||||||||||||||||||| |
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| T |
33563045 |
atgttgatccccgtgagttgttgaaaaagcggaatagcaactgctatcaccaagtgaggtcgatatt |
33562979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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